data_1VC8 # _entry.id 1VC8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VC8 pdb_00001vc8 10.2210/pdb1vc8/pdb RCSB RCSB006455 ? ? WWPDB D_1000006455 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-04-26 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VC8 _pdbx_database_status.recvd_initial_deposition_date 2004-03-05 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1VC9 't.thermophilus HB8 Ap6A hydrolase Ndx1-Mg2+-ATP complex' unspecified PDB 1VCD 't.thermophilus HB8 Ap6A hydrolase Ndx1' unspecified TargetDB ttk003001331.4 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Iwai, T.' 1 'Nakagawa, N.' 2 'Kuramitsu, S.' 3 'Masui, R.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Crystal Structure of Nudix Protein Ndx1 from Thermus thermophilus HB8 in binary complex with diadenosine hexaphosphate' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Iwai, T.' 1 ? primary 'Nakagawa, N.' 2 ? primary 'Kuramitsu, S.' 3 ? primary 'Masui, R.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Ndx1 14186.254 2 ? ? ? ? 2 non-polymer syn "ADENOSINE-5'-PENTAPHOSPHATE" 667.141 2 ? ? ? ? 3 water nat water 18.015 237 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'MutT/nudix family protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MELGAGGVVFNAKREVLLLRDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVHWFL MRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERLPL ; _entity_poly.pdbx_seq_one_letter_code_can ;MELGAGGVVFNAKREVLLLRDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVHWFL MRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERLPL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ttk003001331.4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-PENTAPHOSPHATE" 5FA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 LEU n 1 4 GLY n 1 5 ALA n 1 6 GLY n 1 7 GLY n 1 8 VAL n 1 9 VAL n 1 10 PHE n 1 11 ASN n 1 12 ALA n 1 13 LYS n 1 14 ARG n 1 15 GLU n 1 16 VAL n 1 17 LEU n 1 18 LEU n 1 19 LEU n 1 20 ARG n 1 21 ASP n 1 22 ARG n 1 23 MET n 1 24 GLY n 1 25 PHE n 1 26 TRP n 1 27 VAL n 1 28 PHE n 1 29 PRO n 1 30 LYS n 1 31 GLY n 1 32 HIS n 1 33 PRO n 1 34 GLU n 1 35 PRO n 1 36 GLY n 1 37 GLU n 1 38 SER n 1 39 LEU n 1 40 GLU n 1 41 GLU n 1 42 ALA n 1 43 ALA n 1 44 VAL n 1 45 ARG n 1 46 GLU n 1 47 VAL n 1 48 TRP n 1 49 GLU n 1 50 GLU n 1 51 THR n 1 52 GLY n 1 53 VAL n 1 54 ARG n 1 55 ALA n 1 56 GLU n 1 57 VAL n 1 58 LEU n 1 59 LEU n 1 60 PRO n 1 61 LEU n 1 62 TYR n 1 63 PRO n 1 64 THR n 1 65 ARG n 1 66 TYR n 1 67 VAL n 1 68 ASN n 1 69 PRO n 1 70 LYS n 1 71 GLY n 1 72 VAL n 1 73 GLU n 1 74 ARG n 1 75 GLU n 1 76 VAL n 1 77 HIS n 1 78 TRP n 1 79 PHE n 1 80 LEU n 1 81 MET n 1 82 ARG n 1 83 GLY n 1 84 GLU n 1 85 GLY n 1 86 ALA n 1 87 PRO n 1 88 ARG n 1 89 LEU n 1 90 GLU n 1 91 GLU n 1 92 GLY n 1 93 MET n 1 94 THR n 1 95 GLY n 1 96 ALA n 1 97 GLY n 1 98 TRP n 1 99 PHE n 1 100 SER n 1 101 PRO n 1 102 GLU n 1 103 GLU n 1 104 ALA n 1 105 ARG n 1 106 ALA n 1 107 LEU n 1 108 LEU n 1 109 ALA n 1 110 PHE n 1 111 PRO n 1 112 GLU n 1 113 ASP n 1 114 LEU n 1 115 GLY n 1 116 LEU n 1 117 LEU n 1 118 GLU n 1 119 VAL n 1 120 ALA n 1 121 LEU n 1 122 GLU n 1 123 ARG n 1 124 LEU n 1 125 PRO n 1 126 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene ndx1 _entity_src_gen.gene_src_species 'Thermus thermophilus' _entity_src_gen.gene_src_strain HB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 300852 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET11B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5FA 'RNA linking' n "ADENOSINE-5'-PENTAPHOSPHATE" ? 'C10 H18 N5 O19 P5' 667.141 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 MET 23 23 23 MET MET A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 TRP 26 26 26 TRP TRP A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 TRP 48 48 48 TRP TRP A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 HIS 77 77 77 HIS HIS A . n A 1 78 TRP 78 78 78 TRP TRP A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 MET 81 81 81 MET MET A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 MET 93 93 93 MET MET A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 TRP 98 98 98 TRP TRP A . n A 1 99 PHE 99 99 99 PHE PHE A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 PHE 110 110 110 PHE PHE A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 VAL 119 119 119 VAL VAL A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 LEU 126 126 126 LEU LEU A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 GLU 2 2 2 GLU GLU B . n B 1 3 LEU 3 3 3 LEU LEU B . n B 1 4 GLY 4 4 4 GLY GLY B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 GLY 6 6 6 GLY GLY B . n B 1 7 GLY 7 7 7 GLY GLY B . n B 1 8 VAL 8 8 8 VAL VAL B . n B 1 9 VAL 9 9 9 VAL VAL B . n B 1 10 PHE 10 10 10 PHE PHE B . n B 1 11 ASN 11 11 11 ASN ASN B . n B 1 12 ALA 12 12 12 ALA ALA B . n B 1 13 LYS 13 13 13 LYS LYS B . n B 1 14 ARG 14 14 14 ARG ARG B . n B 1 15 GLU 15 15 15 GLU GLU B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 ARG 20 20 20 ARG ARG B . n B 1 21 ASP 21 21 21 ASP ASP B . n B 1 22 ARG 22 22 22 ARG ARG B . n B 1 23 MET 23 23 23 MET MET B . n B 1 24 GLY 24 24 24 GLY GLY B . n B 1 25 PHE 25 25 25 PHE PHE B . n B 1 26 TRP 26 26 26 TRP TRP B . n B 1 27 VAL 27 27 27 VAL VAL B . n B 1 28 PHE 28 28 28 PHE PHE B . n B 1 29 PRO 29 29 29 PRO PRO B . n B 1 30 LYS 30 30 30 LYS LYS B . n B 1 31 GLY 31 31 31 GLY GLY B . n B 1 32 HIS 32 32 32 HIS HIS B . n B 1 33 PRO 33 33 33 PRO PRO B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 PRO 35 35 35 PRO PRO B . n B 1 36 GLY 36 36 36 GLY GLY B . n B 1 37 GLU 37 37 37 GLU GLU B . n B 1 38 SER 38 38 38 SER SER B . n B 1 39 LEU 39 39 39 LEU LEU B . n B 1 40 GLU 40 40 40 GLU GLU B . n B 1 41 GLU 41 41 41 GLU GLU B . n B 1 42 ALA 42 42 42 ALA ALA B . n B 1 43 ALA 43 43 43 ALA ALA B . n B 1 44 VAL 44 44 44 VAL VAL B . n B 1 45 ARG 45 45 45 ARG ARG B . n B 1 46 GLU 46 46 46 GLU GLU B . n B 1 47 VAL 47 47 47 VAL VAL B . n B 1 48 TRP 48 48 48 TRP TRP B . n B 1 49 GLU 49 49 49 GLU GLU B . n B 1 50 GLU 50 50 50 GLU GLU B . n B 1 51 THR 51 51 51 THR THR B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 VAL 53 53 53 VAL VAL B . n B 1 54 ARG 54 54 54 ARG ARG B . n B 1 55 ALA 55 55 55 ALA ALA B . n B 1 56 GLU 56 56 56 GLU GLU B . n B 1 57 VAL 57 57 57 VAL VAL B . n B 1 58 LEU 58 58 58 LEU LEU B . n B 1 59 LEU 59 59 59 LEU LEU B . n B 1 60 PRO 60 60 60 PRO PRO B . n B 1 61 LEU 61 61 61 LEU LEU B . n B 1 62 TYR 62 62 62 TYR TYR B . n B 1 63 PRO 63 63 63 PRO PRO B . n B 1 64 THR 64 64 64 THR THR B . n B 1 65 ARG 65 65 65 ARG ARG B . n B 1 66 TYR 66 66 66 TYR TYR B . n B 1 67 VAL 67 67 67 VAL VAL B . n B 1 68 ASN 68 68 68 ASN ASN B . n B 1 69 PRO 69 69 69 PRO PRO B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 GLY 71 71 71 GLY GLY B . n B 1 72 VAL 72 72 72 VAL VAL B . n B 1 73 GLU 73 73 73 GLU GLU B . n B 1 74 ARG 74 74 74 ARG ARG B . n B 1 75 GLU 75 75 75 GLU GLU B . n B 1 76 VAL 76 76 76 VAL VAL B . n B 1 77 HIS 77 77 77 HIS HIS B . n B 1 78 TRP 78 78 78 TRP TRP B . n B 1 79 PHE 79 79 79 PHE PHE B . n B 1 80 LEU 80 80 80 LEU LEU B . n B 1 81 MET 81 81 81 MET MET B . n B 1 82 ARG 82 82 82 ARG ARG B . n B 1 83 GLY 83 83 83 GLY GLY B . n B 1 84 GLU 84 84 84 GLU GLU B . n B 1 85 GLY 85 85 85 GLY GLY B . n B 1 86 ALA 86 86 86 ALA ALA B . n B 1 87 PRO 87 87 87 PRO PRO B . n B 1 88 ARG 88 88 88 ARG ARG B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 GLU 90 90 90 GLU GLU B . n B 1 91 GLU 91 91 91 GLU GLU B . n B 1 92 GLY 92 92 92 GLY GLY B . n B 1 93 MET 93 93 93 MET MET B . n B 1 94 THR 94 94 94 THR THR B . n B 1 95 GLY 95 95 95 GLY GLY B . n B 1 96 ALA 96 96 96 ALA ALA B . n B 1 97 GLY 97 97 97 GLY GLY B . n B 1 98 TRP 98 98 98 TRP TRP B . n B 1 99 PHE 99 99 99 PHE PHE B . n B 1 100 SER 100 100 100 SER SER B . n B 1 101 PRO 101 101 101 PRO PRO B . n B 1 102 GLU 102 102 102 GLU GLU B . n B 1 103 GLU 103 103 103 GLU GLU B . n B 1 104 ALA 104 104 104 ALA ALA B . n B 1 105 ARG 105 105 105 ARG ARG B . n B 1 106 ALA 106 106 106 ALA ALA B . n B 1 107 LEU 107 107 107 LEU LEU B . n B 1 108 LEU 108 108 108 LEU LEU B . n B 1 109 ALA 109 109 109 ALA ALA B . n B 1 110 PHE 110 110 110 PHE PHE B . n B 1 111 PRO 111 111 111 PRO PRO B . n B 1 112 GLU 112 112 112 GLU GLU B . n B 1 113 ASP 113 113 113 ASP ASP B . n B 1 114 LEU 114 114 114 LEU LEU B . n B 1 115 GLY 115 115 115 GLY GLY B . n B 1 116 LEU 116 116 116 LEU LEU B . n B 1 117 LEU 117 117 117 LEU LEU B . n B 1 118 GLU 118 118 118 GLU GLU B . n B 1 119 VAL 119 119 119 VAL VAL B . n B 1 120 ALA 120 120 120 ALA ALA B . n B 1 121 LEU 121 121 121 LEU LEU B . n B 1 122 GLU 122 122 122 GLU GLU B . n B 1 123 ARG 123 123 123 ARG ARG B . n B 1 124 LEU 124 124 124 LEU LEU B . n B 1 125 PRO 125 125 125 PRO PRO B . n B 1 126 LEU 126 126 126 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5FA 1 501 501 5FA P5A A . D 2 5FA 1 502 502 5FA P5A B . E 3 HOH 1 502 2 HOH TIP A . E 3 HOH 2 503 5 HOH TIP A . E 3 HOH 3 504 10 HOH TIP A . E 3 HOH 4 505 12 HOH TIP A . E 3 HOH 5 506 14 HOH TIP A . E 3 HOH 6 507 15 HOH TIP A . E 3 HOH 7 508 16 HOH TIP A . E 3 HOH 8 509 17 HOH TIP A . E 3 HOH 9 510 18 HOH TIP A . E 3 HOH 10 511 20 HOH TIP A . E 3 HOH 11 512 23 HOH TIP A . E 3 HOH 12 513 24 HOH TIP A . E 3 HOH 13 514 25 HOH TIP A . E 3 HOH 14 515 26 HOH TIP A . E 3 HOH 15 516 29 HOH TIP A . E 3 HOH 16 517 30 HOH TIP A . E 3 HOH 17 518 32 HOH TIP A . E 3 HOH 18 519 34 HOH TIP A . E 3 HOH 19 520 36 HOH TIP A . E 3 HOH 20 521 37 HOH TIP A . E 3 HOH 21 522 39 HOH TIP A . E 3 HOH 22 523 40 HOH TIP A . E 3 HOH 23 524 41 HOH TIP A . E 3 HOH 24 525 42 HOH TIP A . E 3 HOH 25 526 45 HOH TIP A . E 3 HOH 26 527 46 HOH TIP A . E 3 HOH 27 528 48 HOH TIP A . E 3 HOH 28 529 49 HOH TIP A . E 3 HOH 29 530 52 HOH TIP A . E 3 HOH 30 531 53 HOH TIP A . E 3 HOH 31 532 55 HOH TIP A . E 3 HOH 32 533 56 HOH TIP A . E 3 HOH 33 534 58 HOH TIP A . E 3 HOH 34 535 59 HOH TIP A . E 3 HOH 35 536 63 HOH TIP A . E 3 HOH 36 537 64 HOH TIP A . E 3 HOH 37 538 67 HOH TIP A . E 3 HOH 38 539 68 HOH TIP A . E 3 HOH 39 540 69 HOH TIP A . E 3 HOH 40 541 71 HOH TIP A . E 3 HOH 41 542 76 HOH TIP A . E 3 HOH 42 543 79 HOH TIP A . E 3 HOH 43 544 80 HOH TIP A . E 3 HOH 44 545 81 HOH TIP A . E 3 HOH 45 546 83 HOH TIP A . E 3 HOH 46 547 84 HOH TIP A . E 3 HOH 47 548 86 HOH TIP A . E 3 HOH 48 549 88 HOH TIP A . E 3 HOH 49 550 92 HOH TIP A . E 3 HOH 50 551 93 HOH TIP A . E 3 HOH 51 552 95 HOH TIP A . E 3 HOH 52 553 98 HOH TIP A . E 3 HOH 53 554 100 HOH TIP A . E 3 HOH 54 555 101 HOH TIP A . E 3 HOH 55 556 105 HOH TIP A . E 3 HOH 56 557 107 HOH TIP A . E 3 HOH 57 558 109 HOH TIP A . E 3 HOH 58 559 111 HOH TIP A . E 3 HOH 59 560 112 HOH TIP A . E 3 HOH 60 561 114 HOH TIP A . E 3 HOH 61 562 115 HOH TIP A . E 3 HOH 62 563 118 HOH TIP A . E 3 HOH 63 564 120 HOH TIP A . E 3 HOH 64 565 121 HOH TIP A . E 3 HOH 65 566 122 HOH TIP A . E 3 HOH 66 567 124 HOH TIP A . E 3 HOH 67 568 127 HOH TIP A . E 3 HOH 68 569 128 HOH TIP A . E 3 HOH 69 570 132 HOH TIP A . E 3 HOH 70 571 135 HOH TIP A . E 3 HOH 71 572 136 HOH TIP A . E 3 HOH 72 573 137 HOH TIP A . E 3 HOH 73 574 138 HOH TIP A . E 3 HOH 74 575 140 HOH TIP A . E 3 HOH 75 576 141 HOH TIP A . E 3 HOH 76 577 142 HOH TIP A . E 3 HOH 77 578 143 HOH TIP A . E 3 HOH 78 579 145 HOH TIP A . E 3 HOH 79 580 150 HOH TIP A . E 3 HOH 80 581 151 HOH TIP A . E 3 HOH 81 582 154 HOH TIP A . E 3 HOH 82 583 155 HOH TIP A . E 3 HOH 83 584 158 HOH TIP A . E 3 HOH 84 585 164 HOH TIP A . E 3 HOH 85 586 165 HOH TIP A . E 3 HOH 86 587 166 HOH TIP A . E 3 HOH 87 588 169 HOH TIP A . E 3 HOH 88 589 173 HOH TIP A . E 3 HOH 89 590 174 HOH TIP A . E 3 HOH 90 591 175 HOH TIP A . E 3 HOH 91 592 181 HOH TIP A . E 3 HOH 92 593 182 HOH TIP A . E 3 HOH 93 594 183 HOH TIP A . E 3 HOH 94 595 189 HOH TIP A . E 3 HOH 95 596 190 HOH TIP A . E 3 HOH 96 597 191 HOH TIP A . E 3 HOH 97 598 192 HOH TIP A . E 3 HOH 98 599 193 HOH TIP A . E 3 HOH 99 600 195 HOH TIP A . E 3 HOH 100 601 196 HOH TIP A . E 3 HOH 101 602 202 HOH TIP A . E 3 HOH 102 603 205 HOH TIP A . E 3 HOH 103 604 207 HOH TIP A . E 3 HOH 104 605 210 HOH TIP A . E 3 HOH 105 606 211 HOH TIP A . E 3 HOH 106 607 213 HOH TIP A . E 3 HOH 107 608 214 HOH TIP A . E 3 HOH 108 609 215 HOH TIP A . E 3 HOH 109 610 219 HOH TIP A . E 3 HOH 110 611 220 HOH TIP A . E 3 HOH 111 612 222 HOH TIP A . E 3 HOH 112 613 223 HOH TIP A . E 3 HOH 113 614 226 HOH TIP A . E 3 HOH 114 615 228 HOH TIP A . E 3 HOH 115 616 232 HOH TIP A . E 3 HOH 116 617 233 HOH TIP A . F 3 HOH 1 503 1 HOH TIP B . F 3 HOH 2 504 3 HOH TIP B . F 3 HOH 3 505 4 HOH TIP B . F 3 HOH 4 506 6 HOH TIP B . F 3 HOH 5 507 7 HOH TIP B . F 3 HOH 6 508 8 HOH TIP B . F 3 HOH 7 509 9 HOH TIP B . F 3 HOH 8 510 11 HOH TIP B . F 3 HOH 9 511 13 HOH TIP B . F 3 HOH 10 512 19 HOH TIP B . F 3 HOH 11 513 21 HOH TIP B . F 3 HOH 12 514 22 HOH TIP B . F 3 HOH 13 515 27 HOH TIP B . F 3 HOH 14 516 28 HOH TIP B . F 3 HOH 15 517 31 HOH TIP B . F 3 HOH 16 518 33 HOH TIP B . F 3 HOH 17 519 35 HOH TIP B . F 3 HOH 18 520 38 HOH TIP B . F 3 HOH 19 521 43 HOH TIP B . F 3 HOH 20 522 44 HOH TIP B . F 3 HOH 21 523 47 HOH TIP B . F 3 HOH 22 524 50 HOH TIP B . F 3 HOH 23 525 51 HOH TIP B . F 3 HOH 24 526 54 HOH TIP B . F 3 HOH 25 527 57 HOH TIP B . F 3 HOH 26 528 60 HOH TIP B . F 3 HOH 27 529 61 HOH TIP B . F 3 HOH 28 530 62 HOH TIP B . F 3 HOH 29 531 65 HOH TIP B . F 3 HOH 30 532 66 HOH TIP B . F 3 HOH 31 533 70 HOH TIP B . F 3 HOH 32 534 72 HOH TIP B . F 3 HOH 33 535 73 HOH TIP B . F 3 HOH 34 536 74 HOH TIP B . F 3 HOH 35 537 75 HOH TIP B . F 3 HOH 36 538 77 HOH TIP B . F 3 HOH 37 539 78 HOH TIP B . F 3 HOH 38 540 82 HOH TIP B . F 3 HOH 39 541 85 HOH TIP B . F 3 HOH 40 542 87 HOH TIP B . F 3 HOH 41 543 89 HOH TIP B . F 3 HOH 42 544 90 HOH TIP B . F 3 HOH 43 545 91 HOH TIP B . F 3 HOH 44 546 94 HOH TIP B . F 3 HOH 45 547 96 HOH TIP B . F 3 HOH 46 548 97 HOH TIP B . F 3 HOH 47 549 99 HOH TIP B . F 3 HOH 48 550 102 HOH TIP B . F 3 HOH 49 551 103 HOH TIP B . F 3 HOH 50 552 104 HOH TIP B . F 3 HOH 51 553 106 HOH TIP B . F 3 HOH 52 554 108 HOH TIP B . F 3 HOH 53 555 110 HOH TIP B . F 3 HOH 54 556 113 HOH TIP B . F 3 HOH 55 557 116 HOH TIP B . F 3 HOH 56 558 117 HOH TIP B . F 3 HOH 57 559 119 HOH TIP B . F 3 HOH 58 560 123 HOH TIP B . F 3 HOH 59 561 125 HOH TIP B . F 3 HOH 60 562 126 HOH TIP B . F 3 HOH 61 563 129 HOH TIP B . F 3 HOH 62 564 130 HOH TIP B . F 3 HOH 63 565 131 HOH TIP B . F 3 HOH 64 566 133 HOH TIP B . F 3 HOH 65 567 134 HOH TIP B . F 3 HOH 66 568 139 HOH TIP B . F 3 HOH 67 569 144 HOH TIP B . F 3 HOH 68 570 146 HOH TIP B . F 3 HOH 69 571 147 HOH TIP B . F 3 HOH 70 572 148 HOH TIP B . F 3 HOH 71 573 149 HOH TIP B . F 3 HOH 72 574 152 HOH TIP B . F 3 HOH 73 575 153 HOH TIP B . F 3 HOH 74 576 156 HOH TIP B . F 3 HOH 75 577 157 HOH TIP B . F 3 HOH 76 578 159 HOH TIP B . F 3 HOH 77 579 160 HOH TIP B . F 3 HOH 78 580 161 HOH TIP B . F 3 HOH 79 581 162 HOH TIP B . F 3 HOH 80 582 163 HOH TIP B . F 3 HOH 81 583 167 HOH TIP B . F 3 HOH 82 584 168 HOH TIP B . F 3 HOH 83 585 170 HOH TIP B . F 3 HOH 84 586 171 HOH TIP B . F 3 HOH 85 587 172 HOH TIP B . F 3 HOH 86 588 176 HOH TIP B . F 3 HOH 87 589 177 HOH TIP B . F 3 HOH 88 590 178 HOH TIP B . F 3 HOH 89 591 179 HOH TIP B . F 3 HOH 90 592 180 HOH TIP B . F 3 HOH 91 593 184 HOH TIP B . F 3 HOH 92 594 185 HOH TIP B . F 3 HOH 93 595 186 HOH TIP B . F 3 HOH 94 596 187 HOH TIP B . F 3 HOH 95 597 188 HOH TIP B . F 3 HOH 96 598 194 HOH TIP B . F 3 HOH 97 599 197 HOH TIP B . F 3 HOH 98 600 198 HOH TIP B . F 3 HOH 99 601 199 HOH TIP B . F 3 HOH 100 602 200 HOH TIP B . F 3 HOH 101 603 201 HOH TIP B . F 3 HOH 102 604 203 HOH TIP B . F 3 HOH 103 605 204 HOH TIP B . F 3 HOH 104 606 206 HOH TIP B . F 3 HOH 105 607 208 HOH TIP B . F 3 HOH 106 608 209 HOH TIP B . F 3 HOH 107 609 212 HOH TIP B . F 3 HOH 108 610 216 HOH TIP B . F 3 HOH 109 611 217 HOH TIP B . F 3 HOH 110 612 218 HOH TIP B . F 3 HOH 111 613 221 HOH TIP B . F 3 HOH 112 614 224 HOH TIP B . F 3 HOH 113 615 225 HOH TIP B . F 3 HOH 114 616 227 HOH TIP B . F 3 HOH 115 617 229 HOH TIP B . F 3 HOH 116 618 230 HOH TIP B . F 3 HOH 117 619 231 HOH TIP B . F 3 HOH 118 620 234 HOH TIP B . F 3 HOH 119 621 235 HOH TIP B . F 3 HOH 120 622 236 HOH TIP B . F 3 HOH 121 623 237 HOH TIP B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MLPHARE phasing . ? 4 # _cell.entry_id 1VC8 _cell.length_a 52.413 _cell.length_b 54.775 _cell.length_c 111.673 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VC8 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1VC8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.82 _exptl_crystal.density_percent_sol 56.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '0.1M HEPES, 1.0M succinic acid, 1%(w/v) PEG 2000 MME, 4mM Ap6A, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 7.0' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS VII' _diffrn_detector.pdbx_collection_date 2003-11-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.5418 1.0 2 0.9744 1.0 3 0.9792 1.0 4 0.9798 1.0 5 0.9819 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '1.5418, 0.9744, 0.9792, 0.9798, 0.9819' # _reflns.entry_id 1VC8 _reflns.observed_criterion_sigma_I 3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.0 _reflns.number_obs 22476 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.032 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 42.3 _reflns.B_iso_Wilson_estimate 9.9 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.078 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 23.5 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1VC8 _refine.ls_number_reflns_obs 22254 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F .0 _refine.pdbx_data_cutoff_high_absF 729991.62 _refine.pdbx_data_cutoff_low_absF .000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.96 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.3 _refine.ls_R_factor_obs 0.195 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.195 _refine.ls_R_factor_R_free 0.225 _refine.ls_R_factor_R_free_error .005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 2212 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 18.2 _refine.aniso_B[1][1] 6.93 _refine.aniso_B[2][2] -2.46 _refine.aniso_B[3][3] -4.47 _refine.aniso_B[1][2] .00 _refine.aniso_B[1][3] .00 _refine.aniso_B[2][3] .00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol .390214 _refine.solvent_model_param_bsol 41.7813 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1VC8 _refine_analyze.Luzzati_coordinate_error_obs .21 _refine_analyze.Luzzati_sigma_a_obs .06 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free .25 _refine_analyze.Luzzati_sigma_a_free .12 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2002 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 78 _refine_hist.number_atoms_solvent 237 _refine_hist.number_atoms_total 2317 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 19.96 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d .009 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.9 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d .96 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.23 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.82 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.03 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.02 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 3261 _refine_ls_shell.R_factor_R_work 0.19 _refine_ls_shell.percent_reflns_obs 98.7 _refine_ls_shell.R_factor_R_free 0.236 _refine_ls_shell.R_factor_R_free_error .013 _refine_ls_shell.percent_reflns_R_free 9.6 _refine_ls_shell.number_reflns_R_free 347 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 P5A.PARAM P5A.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER_REP.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1VC8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] .000000 _database_PDB_matrix.origx[1][3] .000000 _database_PDB_matrix.origx[2][1] .000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] .000000 _database_PDB_matrix.origx[3][1] .000000 _database_PDB_matrix.origx[3][2] .000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] .00000 _database_PDB_matrix.origx_vector[2] .00000 _database_PDB_matrix.origx_vector[3] .00000 # _struct.entry_id 1VC8 _struct.title 'Crystal Structure of a T.thermophilus HB8 Ap6A Hydrolase Ndx1-Ap6A Complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VC8 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Nudix protein, diadenosine polyphosphate, Ap6A, Thermus thermophilus HB8, hydrolase, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q75UV1_THETH _struct_ref.pdbx_db_accession Q75UV1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MELGAGGVVFNAKREVLLLRDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVHWFL MRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERLPL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VC8 A 1 ? 126 ? Q75UV1 1 ? 126 ? 1 126 2 1 1VC8 B 1 ? 126 ? Q75UV1 1 ? 126 ? 1 126 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 38 ? GLY A 52 ? SER A 38 GLY A 52 1 ? 15 HELX_P HELX_P2 2 SER A 100 ? LEU A 108 ? SER A 100 LEU A 108 1 ? 9 HELX_P HELX_P3 3 PHE A 110 ? LEU A 124 ? PHE A 110 LEU A 124 1 ? 15 HELX_P HELX_P4 4 SER B 38 ? GLY B 52 ? SER B 38 GLY B 52 1 ? 15 HELX_P HELX_P5 5 SER B 100 ? LEU B 108 ? SER B 100 LEU B 108 1 ? 9 HELX_P HELX_P6 6 PHE B 110 ? LEU B 124 ? PHE B 110 LEU B 124 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 4 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 30 ? GLY A 31 ? LYS A 30 GLY A 31 A 2 GLU A 2 ? PHE A 10 ? GLU A 2 PHE A 10 A 3 GLU A 73 ? GLU A 84 ? GLU A 73 GLU A 84 A 4 ARG A 54 ? VAL A 67 ? ARG A 54 VAL A 67 B 1 TRP A 26 ? VAL A 27 ? TRP A 26 VAL A 27 B 2 VAL A 16 ? ARG A 20 ? VAL A 16 ARG A 20 B 3 GLY A 95 ? PHE A 99 ? GLY A 95 PHE A 99 B 4 GLY B 95 ? PHE B 99 ? GLY B 95 PHE B 99 B 5 VAL B 16 ? ARG B 20 ? VAL B 16 ARG B 20 B 6 TRP B 26 ? VAL B 27 ? TRP B 26 VAL B 27 C 1 LYS B 30 ? GLY B 31 ? LYS B 30 GLY B 31 C 2 GLU B 2 ? PHE B 10 ? GLU B 2 PHE B 10 C 3 GLU B 73 ? GLU B 84 ? GLU B 73 GLU B 84 C 4 ARG B 54 ? PRO B 60 ? ARG B 54 PRO B 60 D 1 LYS B 30 ? GLY B 31 ? LYS B 30 GLY B 31 D 2 GLU B 2 ? PHE B 10 ? GLU B 2 PHE B 10 D 3 GLU B 73 ? GLU B 84 ? GLU B 73 GLU B 84 D 4 THR B 64 ? VAL B 67 ? THR B 64 VAL B 67 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 31 ? O GLY A 31 N ALA A 5 ? N ALA A 5 A 2 3 N GLY A 4 ? N GLY A 4 O HIS A 77 ? O HIS A 77 A 3 4 O ARG A 74 ? O ARG A 74 N TYR A 66 ? N TYR A 66 B 1 2 O VAL A 27 ? O VAL A 27 N LEU A 19 ? N LEU A 19 B 2 3 N VAL A 16 ? N VAL A 16 O PHE A 99 ? O PHE A 99 B 3 4 N ALA A 96 ? N ALA A 96 O ALA B 96 ? O ALA B 96 B 4 5 O PHE B 99 ? O PHE B 99 N VAL B 16 ? N VAL B 16 B 5 6 N LEU B 19 ? N LEU B 19 O VAL B 27 ? O VAL B 27 C 1 2 O GLY B 31 ? O GLY B 31 N ALA B 5 ? N ALA B 5 C 2 3 N GLY B 4 ? N GLY B 4 O HIS B 77 ? O HIS B 77 C 3 4 O LEU B 80 ? O LEU B 80 N LEU B 58 ? N LEU B 58 D 1 2 O GLY B 31 ? O GLY B 31 N ALA B 5 ? N ALA B 5 D 2 3 N GLY B 4 ? N GLY B 4 O HIS B 77 ? O HIS B 77 D 3 4 O ARG B 74 ? O ARG B 74 N TYR B 66 ? N TYR B 66 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 5FA 501 ? 21 'BINDING SITE FOR RESIDUE 5FA A 501' AC2 Software B 5FA 502 ? 24 'BINDING SITE FOR RESIDUE 5FA B 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 21 ASP A 21 ? ASP A 21 . ? 1_555 ? 2 AC1 21 MET A 23 ? MET A 23 . ? 1_555 ? 3 AC1 21 PHE A 25 ? PHE A 25 . ? 1_555 ? 4 AC1 21 LYS A 30 ? LYS A 30 . ? 1_555 ? 5 AC1 21 GLY A 31 ? GLY A 31 . ? 1_555 ? 6 AC1 21 HIS A 32 ? HIS A 32 . ? 1_555 ? 7 AC1 21 GLU A 46 ? GLU A 46 . ? 1_555 ? 8 AC1 21 GLU A 50 ? GLU A 50 . ? 1_555 ? 9 AC1 21 TYR A 66 ? TYR A 66 . ? 1_555 ? 10 AC1 21 ASN A 68 ? ASN A 68 . ? 1_555 ? 11 AC1 21 PRO A 69 ? PRO A 69 . ? 1_555 ? 12 AC1 21 ARG A 74 ? ARG A 74 . ? 1_555 ? 13 AC1 21 PHE A 110 ? PHE A 110 . ? 1_555 ? 14 AC1 21 GLU A 112 ? GLU A 112 . ? 1_555 ? 15 AC1 21 HOH E . ? HOH A 503 . ? 1_555 ? 16 AC1 21 HOH E . ? HOH A 510 . ? 1_555 ? 17 AC1 21 HOH E . ? HOH A 534 . ? 1_555 ? 18 AC1 21 HOH E . ? HOH A 546 . ? 1_555 ? 19 AC1 21 HOH E . ? HOH A 592 . ? 1_555 ? 20 AC1 21 HOH E . ? HOH A 598 . ? 1_555 ? 21 AC1 21 HOH E . ? HOH A 601 . ? 1_555 ? 22 AC2 24 ASP B 21 ? ASP B 21 . ? 1_555 ? 23 AC2 24 MET B 23 ? MET B 23 . ? 1_555 ? 24 AC2 24 PHE B 25 ? PHE B 25 . ? 1_555 ? 25 AC2 24 LYS B 30 ? LYS B 30 . ? 1_555 ? 26 AC2 24 GLY B 31 ? GLY B 31 . ? 1_555 ? 27 AC2 24 HIS B 32 ? HIS B 32 . ? 1_555 ? 28 AC2 24 GLU B 46 ? GLU B 46 . ? 1_555 ? 29 AC2 24 GLU B 50 ? GLU B 50 . ? 1_555 ? 30 AC2 24 TYR B 66 ? TYR B 66 . ? 1_555 ? 31 AC2 24 ASN B 68 ? ASN B 68 . ? 1_555 ? 32 AC2 24 PRO B 69 ? PRO B 69 . ? 1_555 ? 33 AC2 24 ARG B 74 ? ARG B 74 . ? 1_555 ? 34 AC2 24 PHE B 110 ? PHE B 110 . ? 1_555 ? 35 AC2 24 GLU B 112 ? GLU B 112 . ? 1_555 ? 36 AC2 24 HOH F . ? HOH B 503 . ? 1_555 ? 37 AC2 24 HOH F . ? HOH B 507 . ? 1_555 ? 38 AC2 24 HOH F . ? HOH B 509 . ? 1_555 ? 39 AC2 24 HOH F . ? HOH B 519 . ? 1_555 ? 40 AC2 24 HOH F . ? HOH B 526 . ? 1_555 ? 41 AC2 24 HOH F . ? HOH B 543 . ? 1_555 ? 42 AC2 24 HOH F . ? HOH B 571 . ? 1_555 ? 43 AC2 24 HOH F . ? HOH B 590 . ? 1_555 ? 44 AC2 24 HOH F . ? HOH B 598 . ? 1_555 ? 45 AC2 24 HOH F . ? HOH B 612 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 61 ? ? -106.50 -112.37 2 1 LEU B 61 ? ? -108.01 -112.05 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5FA N9 N Y N 1 5FA C8 C Y N 2 5FA N7 N Y N 3 5FA C5 C Y N 4 5FA C6 C Y N 5 5FA N6 N N N 6 5FA N1 N Y N 7 5FA C2 C Y N 8 5FA N3 N Y N 9 5FA C4 C Y N 10 5FA "O5'" O N N 11 5FA "C5'" C N N 12 5FA "C4'" C N R 13 5FA "O4'" O N N 14 5FA "C3'" C N S 15 5FA "O3'" O N N 16 5FA "C2'" C N R 17 5FA "O2'" O N N 18 5FA "C1'" C N R 19 5FA PA P N S 20 5FA O1A O N N 21 5FA O2A O N N 22 5FA O3A O N N 23 5FA PB P N R 24 5FA O1B O N N 25 5FA O2B O N N 26 5FA O3B O N N 27 5FA PG P N R 28 5FA O2G O N N 29 5FA O1G O N N 30 5FA O3G O N N 31 5FA PD P N S 32 5FA O1D O N N 33 5FA O2D O N N 34 5FA O3D O N N 35 5FA PE P N N 36 5FA O1E O N N 37 5FA O2E O N N 38 5FA O3E O N N 39 5FA H8 H N N 40 5FA H61 H N N 41 5FA H62 H N N 42 5FA H2 H N N 43 5FA "H5'1" H N N 44 5FA "H5'2" H N N 45 5FA "H4'" H N N 46 5FA "H3'" H N N 47 5FA H3T H N N 48 5FA "H2'" H N N 49 5FA "HO'2" H N N 50 5FA "H1'" H N N 51 5FA H2A H N N 52 5FA H2B H N N 53 5FA H1G H N N 54 5FA H2D H N N 55 5FA H2E H N N 56 5FA H3E H N N 57 ALA N N N N 58 ALA CA C N S 59 ALA C C N N 60 ALA O O N N 61 ALA CB C N N 62 ALA OXT O N N 63 ALA H H N N 64 ALA H2 H N N 65 ALA HA H N N 66 ALA HB1 H N N 67 ALA HB2 H N N 68 ALA HB3 H N N 69 ALA HXT H N N 70 ARG N N N N 71 ARG CA C N S 72 ARG C C N N 73 ARG O O N N 74 ARG CB C N N 75 ARG CG C N N 76 ARG CD C N N 77 ARG NE N N N 78 ARG CZ C N N 79 ARG NH1 N N N 80 ARG NH2 N N N 81 ARG OXT O N N 82 ARG H H N N 83 ARG H2 H N N 84 ARG HA H N N 85 ARG HB2 H N N 86 ARG HB3 H N N 87 ARG HG2 H N N 88 ARG HG3 H N N 89 ARG HD2 H N N 90 ARG HD3 H N N 91 ARG HE H N N 92 ARG HH11 H N N 93 ARG HH12 H N N 94 ARG HH21 H N N 95 ARG HH22 H N N 96 ARG HXT H N N 97 ASN N N N N 98 ASN CA C N S 99 ASN C C N N 100 ASN O O N N 101 ASN CB C N N 102 ASN CG C N N 103 ASN OD1 O N N 104 ASN ND2 N N N 105 ASN OXT O N N 106 ASN H H N N 107 ASN H2 H N N 108 ASN HA H N N 109 ASN HB2 H N N 110 ASN HB3 H N N 111 ASN HD21 H N N 112 ASN HD22 H N N 113 ASN HXT H N N 114 ASP N N N N 115 ASP CA C N S 116 ASP C C N N 117 ASP O O N N 118 ASP CB C N N 119 ASP CG C N N 120 ASP OD1 O N N 121 ASP OD2 O N N 122 ASP OXT O N N 123 ASP H H N N 124 ASP H2 H N N 125 ASP HA H N N 126 ASP HB2 H N N 127 ASP HB3 H N N 128 ASP HD2 H N N 129 ASP HXT H N N 130 GLU N N N N 131 GLU CA C N S 132 GLU C C N N 133 GLU O O N N 134 GLU CB C N N 135 GLU CG C N N 136 GLU CD C N N 137 GLU OE1 O N N 138 GLU OE2 O N N 139 GLU OXT O N N 140 GLU H H N N 141 GLU H2 H N N 142 GLU HA H N N 143 GLU HB2 H N N 144 GLU HB3 H N N 145 GLU HG2 H N N 146 GLU HG3 H N N 147 GLU HE2 H N N 148 GLU HXT H N N 149 GLY N N N N 150 GLY CA C N N 151 GLY C C N N 152 GLY O O N N 153 GLY OXT O N N 154 GLY H H N N 155 GLY H2 H N N 156 GLY HA2 H N N 157 GLY HA3 H N N 158 GLY HXT H N N 159 HIS N N N N 160 HIS CA C N S 161 HIS C C N N 162 HIS O O N N 163 HIS CB C N N 164 HIS CG C Y N 165 HIS ND1 N Y N 166 HIS CD2 C Y N 167 HIS CE1 C Y N 168 HIS NE2 N Y N 169 HIS OXT O N N 170 HIS H H N N 171 HIS H2 H N N 172 HIS HA H N N 173 HIS HB2 H N N 174 HIS HB3 H N N 175 HIS HD1 H N N 176 HIS HD2 H N N 177 HIS HE1 H N N 178 HIS HE2 H N N 179 HIS HXT H N N 180 HOH O O N N 181 HOH H1 H N N 182 HOH H2 H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MET N N N N 231 MET CA C N S 232 MET C C N N 233 MET O O N N 234 MET CB C N N 235 MET CG C N N 236 MET SD S N N 237 MET CE C N N 238 MET OXT O N N 239 MET H H N N 240 MET H2 H N N 241 MET HA H N N 242 MET HB2 H N N 243 MET HB3 H N N 244 MET HG2 H N N 245 MET HG3 H N N 246 MET HE1 H N N 247 MET HE2 H N N 248 MET HE3 H N N 249 MET HXT H N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 VAL N N N N 373 VAL CA C N S 374 VAL C C N N 375 VAL O O N N 376 VAL CB C N N 377 VAL CG1 C N N 378 VAL CG2 C N N 379 VAL OXT O N N 380 VAL H H N N 381 VAL H2 H N N 382 VAL HA H N N 383 VAL HB H N N 384 VAL HG11 H N N 385 VAL HG12 H N N 386 VAL HG13 H N N 387 VAL HG21 H N N 388 VAL HG22 H N N 389 VAL HG23 H N N 390 VAL HXT H N N 391 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5FA N9 C8 sing Y N 1 5FA N9 C4 sing Y N 2 5FA N9 "C1'" sing N N 3 5FA C8 N7 doub Y N 4 5FA C8 H8 sing N N 5 5FA N7 C5 sing Y N 6 5FA C5 C6 sing Y N 7 5FA C5 C4 doub Y N 8 5FA C6 N6 sing N N 9 5FA C6 N1 doub Y N 10 5FA N6 H61 sing N N 11 5FA N6 H62 sing N N 12 5FA N1 C2 sing Y N 13 5FA C2 N3 doub Y N 14 5FA C2 H2 sing N N 15 5FA N3 C4 sing Y N 16 5FA "O5'" "C5'" sing N N 17 5FA "O5'" PA sing N N 18 5FA "C5'" "C4'" sing N N 19 5FA "C5'" "H5'1" sing N N 20 5FA "C5'" "H5'2" sing N N 21 5FA "C4'" "O4'" sing N N 22 5FA "C4'" "C3'" sing N N 23 5FA "C4'" "H4'" sing N N 24 5FA "O4'" "C1'" sing N N 25 5FA "C3'" "O3'" sing N N 26 5FA "C3'" "C2'" sing N N 27 5FA "C3'" "H3'" sing N N 28 5FA "O3'" H3T sing N N 29 5FA "C2'" "O2'" sing N N 30 5FA "C2'" "C1'" sing N N 31 5FA "C2'" "H2'" sing N N 32 5FA "O2'" "HO'2" sing N N 33 5FA "C1'" "H1'" sing N N 34 5FA PA O1A doub N N 35 5FA PA O2A sing N N 36 5FA PA O3A sing N N 37 5FA O2A H2A sing N N 38 5FA O3A PB sing N N 39 5FA PB O1B doub N N 40 5FA PB O2B sing N N 41 5FA PB O3B sing N N 42 5FA O2B H2B sing N N 43 5FA O3B PG sing N N 44 5FA PG O2G doub N N 45 5FA PG O1G sing N N 46 5FA PG O3G sing N N 47 5FA O1G H1G sing N N 48 5FA O3G PD sing N N 49 5FA PD O1D doub N N 50 5FA PD O2D sing N N 51 5FA PD O3D sing N N 52 5FA O2D H2D sing N N 53 5FA O3D PE sing N N 54 5FA PE O1E doub N N 55 5FA PE O2E sing N N 56 5FA PE O3E sing N N 57 5FA O2E H2E sing N N 58 5FA O3E H3E sing N N 59 ALA N CA sing N N 60 ALA N H sing N N 61 ALA N H2 sing N N 62 ALA CA C sing N N 63 ALA CA CB sing N N 64 ALA CA HA sing N N 65 ALA C O doub N N 66 ALA C OXT sing N N 67 ALA CB HB1 sing N N 68 ALA CB HB2 sing N N 69 ALA CB HB3 sing N N 70 ALA OXT HXT sing N N 71 ARG N CA sing N N 72 ARG N H sing N N 73 ARG N H2 sing N N 74 ARG CA C sing N N 75 ARG CA CB sing N N 76 ARG CA HA sing N N 77 ARG C O doub N N 78 ARG C OXT sing N N 79 ARG CB CG sing N N 80 ARG CB HB2 sing N N 81 ARG CB HB3 sing N N 82 ARG CG CD sing N N 83 ARG CG HG2 sing N N 84 ARG CG HG3 sing N N 85 ARG CD NE sing N N 86 ARG CD HD2 sing N N 87 ARG CD HD3 sing N N 88 ARG NE CZ sing N N 89 ARG NE HE sing N N 90 ARG CZ NH1 sing N N 91 ARG CZ NH2 doub N N 92 ARG NH1 HH11 sing N N 93 ARG NH1 HH12 sing N N 94 ARG NH2 HH21 sing N N 95 ARG NH2 HH22 sing N N 96 ARG OXT HXT sing N N 97 ASN N CA sing N N 98 ASN N H sing N N 99 ASN N H2 sing N N 100 ASN CA C sing N N 101 ASN CA CB sing N N 102 ASN CA HA sing N N 103 ASN C O doub N N 104 ASN C OXT sing N N 105 ASN CB CG sing N N 106 ASN CB HB2 sing N N 107 ASN CB HB3 sing N N 108 ASN CG OD1 doub N N 109 ASN CG ND2 sing N N 110 ASN ND2 HD21 sing N N 111 ASN ND2 HD22 sing N N 112 ASN OXT HXT sing N N 113 ASP N CA sing N N 114 ASP N H sing N N 115 ASP N H2 sing N N 116 ASP CA C sing N N 117 ASP CA CB sing N N 118 ASP CA HA sing N N 119 ASP C O doub N N 120 ASP C OXT sing N N 121 ASP CB CG sing N N 122 ASP CB HB2 sing N N 123 ASP CB HB3 sing N N 124 ASP CG OD1 doub N N 125 ASP CG OD2 sing N N 126 ASP OD2 HD2 sing N N 127 ASP OXT HXT sing N N 128 GLU N CA sing N N 129 GLU N H sing N N 130 GLU N H2 sing N N 131 GLU CA C sing N N 132 GLU CA CB sing N N 133 GLU CA HA sing N N 134 GLU C O doub N N 135 GLU C OXT sing N N 136 GLU CB CG sing N N 137 GLU CB HB2 sing N N 138 GLU CB HB3 sing N N 139 GLU CG CD sing N N 140 GLU CG HG2 sing N N 141 GLU CG HG3 sing N N 142 GLU CD OE1 doub N N 143 GLU CD OE2 sing N N 144 GLU OE2 HE2 sing N N 145 GLU OXT HXT sing N N 146 GLY N CA sing N N 147 GLY N H sing N N 148 GLY N H2 sing N N 149 GLY CA C sing N N 150 GLY CA HA2 sing N N 151 GLY CA HA3 sing N N 152 GLY C O doub N N 153 GLY C OXT sing N N 154 GLY OXT HXT sing N N 155 HIS N CA sing N N 156 HIS N H sing N N 157 HIS N H2 sing N N 158 HIS CA C sing N N 159 HIS CA CB sing N N 160 HIS CA HA sing N N 161 HIS C O doub N N 162 HIS C OXT sing N N 163 HIS CB CG sing N N 164 HIS CB HB2 sing N N 165 HIS CB HB3 sing N N 166 HIS CG ND1 sing Y N 167 HIS CG CD2 doub Y N 168 HIS ND1 CE1 doub Y N 169 HIS ND1 HD1 sing N N 170 HIS CD2 NE2 sing Y N 171 HIS CD2 HD2 sing N N 172 HIS CE1 NE2 sing Y N 173 HIS CE1 HE1 sing N N 174 HIS NE2 HE2 sing N N 175 HIS OXT HXT sing N N 176 HOH O H1 sing N N 177 HOH O H2 sing N N 178 LEU N CA sing N N 179 LEU N H sing N N 180 LEU N H2 sing N N 181 LEU CA C sing N N 182 LEU CA CB sing N N 183 LEU CA HA sing N N 184 LEU C O doub N N 185 LEU C OXT sing N N 186 LEU CB CG sing N N 187 LEU CB HB2 sing N N 188 LEU CB HB3 sing N N 189 LEU CG CD1 sing N N 190 LEU CG CD2 sing N N 191 LEU CG HG sing N N 192 LEU CD1 HD11 sing N N 193 LEU CD1 HD12 sing N N 194 LEU CD1 HD13 sing N N 195 LEU CD2 HD21 sing N N 196 LEU CD2 HD22 sing N N 197 LEU CD2 HD23 sing N N 198 LEU OXT HXT sing N N 199 LYS N CA sing N N 200 LYS N H sing N N 201 LYS N H2 sing N N 202 LYS CA C sing N N 203 LYS CA CB sing N N 204 LYS CA HA sing N N 205 LYS C O doub N N 206 LYS C OXT sing N N 207 LYS CB CG sing N N 208 LYS CB HB2 sing N N 209 LYS CB HB3 sing N N 210 LYS CG CD sing N N 211 LYS CG HG2 sing N N 212 LYS CG HG3 sing N N 213 LYS CD CE sing N N 214 LYS CD HD2 sing N N 215 LYS CD HD3 sing N N 216 LYS CE NZ sing N N 217 LYS CE HE2 sing N N 218 LYS CE HE3 sing N N 219 LYS NZ HZ1 sing N N 220 LYS NZ HZ2 sing N N 221 LYS NZ HZ3 sing N N 222 LYS OXT HXT sing N N 223 MET N CA sing N N 224 MET N H sing N N 225 MET N H2 sing N N 226 MET CA C sing N N 227 MET CA CB sing N N 228 MET CA HA sing N N 229 MET C O doub N N 230 MET C OXT sing N N 231 MET CB CG sing N N 232 MET CB HB2 sing N N 233 MET CB HB3 sing N N 234 MET CG SD sing N N 235 MET CG HG2 sing N N 236 MET CG HG3 sing N N 237 MET SD CE sing N N 238 MET CE HE1 sing N N 239 MET CE HE2 sing N N 240 MET CE HE3 sing N N 241 MET OXT HXT sing N N 242 PHE N CA sing N N 243 PHE N H sing N N 244 PHE N H2 sing N N 245 PHE CA C sing N N 246 PHE CA CB sing N N 247 PHE CA HA sing N N 248 PHE C O doub N N 249 PHE C OXT sing N N 250 PHE CB CG sing N N 251 PHE CB HB2 sing N N 252 PHE CB HB3 sing N N 253 PHE CG CD1 doub Y N 254 PHE CG CD2 sing Y N 255 PHE CD1 CE1 sing Y N 256 PHE CD1 HD1 sing N N 257 PHE CD2 CE2 doub Y N 258 PHE CD2 HD2 sing N N 259 PHE CE1 CZ doub Y N 260 PHE CE1 HE1 sing N N 261 PHE CE2 CZ sing Y N 262 PHE CE2 HE2 sing N N 263 PHE CZ HZ sing N N 264 PHE OXT HXT sing N N 265 PRO N CA sing N N 266 PRO N CD sing N N 267 PRO N H sing N N 268 PRO CA C sing N N 269 PRO CA CB sing N N 270 PRO CA HA sing N N 271 PRO C O doub N N 272 PRO C OXT sing N N 273 PRO CB CG sing N N 274 PRO CB HB2 sing N N 275 PRO CB HB3 sing N N 276 PRO CG CD sing N N 277 PRO CG HG2 sing N N 278 PRO CG HG3 sing N N 279 PRO CD HD2 sing N N 280 PRO CD HD3 sing N N 281 PRO OXT HXT sing N N 282 SER N CA sing N N 283 SER N H sing N N 284 SER N H2 sing N N 285 SER CA C sing N N 286 SER CA CB sing N N 287 SER CA HA sing N N 288 SER C O doub N N 289 SER C OXT sing N N 290 SER CB OG sing N N 291 SER CB HB2 sing N N 292 SER CB HB3 sing N N 293 SER OG HG sing N N 294 SER OXT HXT sing N N 295 THR N CA sing N N 296 THR N H sing N N 297 THR N H2 sing N N 298 THR CA C sing N N 299 THR CA CB sing N N 300 THR CA HA sing N N 301 THR C O doub N N 302 THR C OXT sing N N 303 THR CB OG1 sing N N 304 THR CB CG2 sing N N 305 THR CB HB sing N N 306 THR OG1 HG1 sing N N 307 THR CG2 HG21 sing N N 308 THR CG2 HG22 sing N N 309 THR CG2 HG23 sing N N 310 THR OXT HXT sing N N 311 TRP N CA sing N N 312 TRP N H sing N N 313 TRP N H2 sing N N 314 TRP CA C sing N N 315 TRP CA CB sing N N 316 TRP CA HA sing N N 317 TRP C O doub N N 318 TRP C OXT sing N N 319 TRP CB CG sing N N 320 TRP CB HB2 sing N N 321 TRP CB HB3 sing N N 322 TRP CG CD1 doub Y N 323 TRP CG CD2 sing Y N 324 TRP CD1 NE1 sing Y N 325 TRP CD1 HD1 sing N N 326 TRP CD2 CE2 doub Y N 327 TRP CD2 CE3 sing Y N 328 TRP NE1 CE2 sing Y N 329 TRP NE1 HE1 sing N N 330 TRP CE2 CZ2 sing Y N 331 TRP CE3 CZ3 doub Y N 332 TRP CE3 HE3 sing N N 333 TRP CZ2 CH2 doub Y N 334 TRP CZ2 HZ2 sing N N 335 TRP CZ3 CH2 sing Y N 336 TRP CZ3 HZ3 sing N N 337 TRP CH2 HH2 sing N N 338 TRP OXT HXT sing N N 339 TYR N CA sing N N 340 TYR N H sing N N 341 TYR N H2 sing N N 342 TYR CA C sing N N 343 TYR CA CB sing N N 344 TYR CA HA sing N N 345 TYR C O doub N N 346 TYR C OXT sing N N 347 TYR CB CG sing N N 348 TYR CB HB2 sing N N 349 TYR CB HB3 sing N N 350 TYR CG CD1 doub Y N 351 TYR CG CD2 sing Y N 352 TYR CD1 CE1 sing Y N 353 TYR CD1 HD1 sing N N 354 TYR CD2 CE2 doub Y N 355 TYR CD2 HD2 sing N N 356 TYR CE1 CZ doub Y N 357 TYR CE1 HE1 sing N N 358 TYR CE2 CZ sing Y N 359 TYR CE2 HE2 sing N N 360 TYR CZ OH sing N N 361 TYR OH HH sing N N 362 TYR OXT HXT sing N N 363 VAL N CA sing N N 364 VAL N H sing N N 365 VAL N H2 sing N N 366 VAL CA C sing N N 367 VAL CA CB sing N N 368 VAL CA HA sing N N 369 VAL C O doub N N 370 VAL C OXT sing N N 371 VAL CB CG1 sing N N 372 VAL CB CG2 sing N N 373 VAL CB HB sing N N 374 VAL CG1 HG11 sing N N 375 VAL CG1 HG12 sing N N 376 VAL CG1 HG13 sing N N 377 VAL CG2 HG21 sing N N 378 VAL CG2 HG22 sing N N 379 VAL CG2 HG23 sing N N 380 VAL OXT HXT sing N N 381 # _atom_sites.entry_id 1VC8 _atom_sites.fract_transf_matrix[1][1] .019079 _atom_sites.fract_transf_matrix[1][2] .000000 _atom_sites.fract_transf_matrix[1][3] .000000 _atom_sites.fract_transf_matrix[2][1] .000000 _atom_sites.fract_transf_matrix[2][2] .018257 _atom_sites.fract_transf_matrix[2][3] .000000 _atom_sites.fract_transf_matrix[3][1] .000000 _atom_sites.fract_transf_matrix[3][2] .000000 _atom_sites.fract_transf_matrix[3][3] .008955 _atom_sites.fract_transf_vector[1] .00000 _atom_sites.fract_transf_vector[2] .00000 _atom_sites.fract_transf_vector[3] .00000 # loop_ _atom_type.symbol C N O P S # loop_