HEADER TRANSFERASE 08-MAR-04 1VCH TITLE CRYSTAL STRUCTURE OF A PHOSPHORIBOSYLTRANSFERASE-RELATED PROTEIN FROM TITLE 2 THERMUS THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLTRANSFERASE-RELATED PROTEIN; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 EC: 2.4.2.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS TRANSFERASE, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR P.H.REHSE,T.H.TAHIROV,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 2 (RSGI) REVDAT 4 03-APR-24 1VCH 1 REMARK REVDAT 3 27-DEC-23 1VCH 1 REMARK LINK REVDAT 2 24-FEB-09 1VCH 1 VERSN REVDAT 1 22-MAR-05 1VCH 0 JRNL AUTH P.H.REHSE,T.H.TAHIROV JRNL TITL CRYSTAL STRUCTURE OF A PHOSPHORIBOSYLTRANSFERASE-RELATED JRNL TITL 2 PROTEIN FROM THERMUS THERMOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1594001.240 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 73828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3728 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11038 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 587 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6504 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 373 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.27 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.990 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.930 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.140 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.390 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.020 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 53.84 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ACY.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CIS_PEPTIDE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ACY.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VCH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000006461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JAN-03; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; NULL REMARK 200 RADIATION SOURCE : SPRING-8; NULL REMARK 200 BEAMLINE : BL26B1; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0; NULL REMARK 200 MONOCHROMATOR : SI111; SI111 REMARK 200 OPTICS : MIRRORS; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; NULL REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80673 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.50100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT, MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: PARTIAL STRUCTURE FROM MAD DATA SET REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, PEG 10K, CAAC, MEOH, PH 5.6, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 83.70950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.70250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 83.70950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.70250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER. CHAINS A AND B COMPOSE ONE, REMARK 300 CHAINS C AND D A SECOND, AND CHAIN E RELATED TO ITSELF REMARK 300 (CRYSTALLOGRAPHIC C2) COMPOSES THE THIRD. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 160.33019 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 102.14331 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 69860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 76.62069 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 -30.70250 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 102.14331 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 83.70950 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -30.70250 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 160.33019 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 102.14331 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E1006 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 100 REMARK 465 THR A 101 REMARK 465 LEU A 102 REMARK 465 GLY A 103 REMARK 465 VAL A 104 REMARK 465 LEU B 100 REMARK 465 THR B 101 REMARK 465 LEU B 102 REMARK 465 GLY B 103 REMARK 465 VAL B 104 REMARK 465 LEU C 100 REMARK 465 THR C 101 REMARK 465 LEU C 102 REMARK 465 GLY C 103 REMARK 465 VAL C 104 REMARK 465 LEU D 102 REMARK 465 GLY D 103 REMARK 465 MET E 1 REMARK 465 LEU E 32 REMARK 465 GLY E 33 REMARK 465 ASP E 34 REMARK 465 ALA E 73 REMARK 465 LEU E 74 REMARK 465 GLY E 75 REMARK 465 LEU E 76 REMARK 465 VAL E 97 REMARK 465 GLN E 98 REMARK 465 THR E 99 REMARK 465 LEU E 100 REMARK 465 THR E 101 REMARK 465 LEU E 102 REMARK 465 GLY E 103 REMARK 465 VAL E 104 REMARK 465 LEU E 119 REMARK 465 ASN E 120 REMARK 465 GLY E 133 REMARK 465 GLU E 134 REMARK 465 GLU E 140 REMARK 465 VAL E 151 REMARK 465 ALA E 152 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 105 N CA REMARK 470 GLY C 105 N CA REMARK 470 THR C 161 CB OG1 CG2 REMARK 470 ILE E 6 CG1 CG2 CD1 REMARK 470 PRO E 35 CG CD REMARK 470 GLU E 52 CG CD OE1 OE2 REMARK 470 LEU E 70 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO E 35 N ARG E 39 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU E 52 N - CA - C ANGL. DEV. = -20.3 DEGREES REMARK 500 ARG E 84 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 91 70.86 12.43 REMARK 500 ALA A 131 -92.12 -129.00 REMARK 500 GLU B 19 79.27 -115.38 REMARK 500 ASP B 91 65.23 5.39 REMARK 500 GLN B 98 105.49 -56.29 REMARK 500 ALA B 131 -86.42 -117.35 REMARK 500 ALA B 152 145.58 -172.72 REMARK 500 ASP C 91 72.67 -3.64 REMARK 500 ALA C 131 -84.80 -114.53 REMARK 500 ARG D 84 147.57 -171.90 REMARK 500 ASP D 91 70.62 10.32 REMARK 500 THR D 99 -149.08 -100.16 REMARK 500 ALA D 131 -93.83 -121.60 REMARK 500 PRO E 47 -1.73 -47.31 REMARK 500 PRO E 50 55.28 -65.38 REMARK 500 LYS E 51 74.55 -26.08 REMARK 500 GLU E 52 7.01 -155.22 REMARK 500 ASP E 91 89.31 7.33 REMARK 500 ALA E 131 -75.24 -124.09 REMARK 500 LEU E 144 39.64 -79.42 REMARK 500 ARG E 145 -17.64 -158.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1006 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 54 OE2 REMARK 620 2 HOH C2009 O 86.2 REMARK 620 3 HOH C2013 O 172.0 88.2 REMARK 620 4 HOH C2020 O 98.7 150.1 83.5 REMARK 620 5 HOH C2025 O 96.8 80.1 76.5 70.1 REMARK 620 6 GLU D 171 OE1 94.0 76.9 90.3 131.5 153.8 REMARK 620 7 GLU D 171 OE2 100.0 127.8 87.9 80.6 148.1 51.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL E 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY C 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY D 2004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000096 RELATED DB: TARGETDB DBREF 1VCH A 1 175 UNP Q5SHW7 Q5SHW7_THET8 1 175 DBREF 1VCH B 1 175 UNP Q5SHW7 Q5SHW7_THET8 1 175 DBREF 1VCH C 1 175 UNP Q5SHW7 Q5SHW7_THET8 1 175 DBREF 1VCH D 1 175 UNP Q5SHW7 Q5SHW7_THET8 1 175 DBREF 1VCH E 1 175 UNP Q5SHW7 Q5SHW7_THET8 1 175 SEQRES 1 A 175 MET GLU THR TYR PRO ILE THR VAL GLY GLY VAL THR ARG SEQRES 2 A 175 HIS VAL PRO LEU ILE GLU PRO LEU PRO GLY ARG ARG ILE SEQRES 3 A 175 PRO LEU VAL GLU PHE LEU GLY ASP PRO GLU PHE THR ARG SEQRES 4 A 175 ALA ALA ALA GLU ALA LEU ARG PRO LEU VAL PRO LYS GLU SEQRES 5 A 175 ALA GLU ILE LEU PHE THR THR GLU THR SER PRO ILE PRO SEQRES 6 A 175 LEU THR HIS VAL LEU ALA GLU ALA LEU GLY LEU PRO TYR SEQRES 7 A 175 VAL VAL ALA ARG ARG ARG ARG ARG PRO TYR MET GLU ASP SEQRES 8 A 175 PRO ILE ILE GLN GLU VAL GLN THR LEU THR LEU GLY VAL SEQRES 9 A 175 GLY GLU VAL LEU TRP LEU ASP ARG ARG PHE ALA GLU LYS SEQRES 10 A 175 LEU LEU ASN GLN ARG VAL VAL LEU VAL SER ASP VAL VAL SEQRES 11 A 175 ALA SER GLY GLU THR MET ARG ALA MET GLU LYS MET VAL SEQRES 12 A 175 LEU ARG ALA GLY GLY HIS VAL VAL ALA ARG LEU ALA VAL SEQRES 13 A 175 PHE ARG GLN GLY THR PRO GLY LEU ALA VAL ASP THR VAL SEQRES 14 A 175 ALA GLU LEU PRO VAL LEU SEQRES 1 B 175 MET GLU THR TYR PRO ILE THR VAL GLY GLY VAL THR ARG SEQRES 2 B 175 HIS VAL PRO LEU ILE GLU PRO LEU PRO GLY ARG ARG ILE SEQRES 3 B 175 PRO LEU VAL GLU PHE LEU GLY ASP PRO GLU PHE THR ARG SEQRES 4 B 175 ALA ALA ALA GLU ALA LEU ARG PRO LEU VAL PRO LYS GLU SEQRES 5 B 175 ALA GLU ILE LEU PHE THR THR GLU THR SER PRO ILE PRO SEQRES 6 B 175 LEU THR HIS VAL LEU ALA GLU ALA LEU GLY LEU PRO TYR SEQRES 7 B 175 VAL VAL ALA ARG ARG ARG ARG ARG PRO TYR MET GLU ASP SEQRES 8 B 175 PRO ILE ILE GLN GLU VAL GLN THR LEU THR LEU GLY VAL SEQRES 9 B 175 GLY GLU VAL LEU TRP LEU ASP ARG ARG PHE ALA GLU LYS SEQRES 10 B 175 LEU LEU ASN GLN ARG VAL VAL LEU VAL SER ASP VAL VAL SEQRES 11 B 175 ALA SER GLY GLU THR MET ARG ALA MET GLU LYS MET VAL SEQRES 12 B 175 LEU ARG ALA GLY GLY HIS VAL VAL ALA ARG LEU ALA VAL SEQRES 13 B 175 PHE ARG GLN GLY THR PRO GLY LEU ALA VAL ASP THR VAL SEQRES 14 B 175 ALA GLU LEU PRO VAL LEU SEQRES 1 C 175 MET GLU THR TYR PRO ILE THR VAL GLY GLY VAL THR ARG SEQRES 2 C 175 HIS VAL PRO LEU ILE GLU PRO LEU PRO GLY ARG ARG ILE SEQRES 3 C 175 PRO LEU VAL GLU PHE LEU GLY ASP PRO GLU PHE THR ARG SEQRES 4 C 175 ALA ALA ALA GLU ALA LEU ARG PRO LEU VAL PRO LYS GLU SEQRES 5 C 175 ALA GLU ILE LEU PHE THR THR GLU THR SER PRO ILE PRO SEQRES 6 C 175 LEU THR HIS VAL LEU ALA GLU ALA LEU GLY LEU PRO TYR SEQRES 7 C 175 VAL VAL ALA ARG ARG ARG ARG ARG PRO TYR MET GLU ASP SEQRES 8 C 175 PRO ILE ILE GLN GLU VAL GLN THR LEU THR LEU GLY VAL SEQRES 9 C 175 GLY GLU VAL LEU TRP LEU ASP ARG ARG PHE ALA GLU LYS SEQRES 10 C 175 LEU LEU ASN GLN ARG VAL VAL LEU VAL SER ASP VAL VAL SEQRES 11 C 175 ALA SER GLY GLU THR MET ARG ALA MET GLU LYS MET VAL SEQRES 12 C 175 LEU ARG ALA GLY GLY HIS VAL VAL ALA ARG LEU ALA VAL SEQRES 13 C 175 PHE ARG GLN GLY THR PRO GLY LEU ALA VAL ASP THR VAL SEQRES 14 C 175 ALA GLU LEU PRO VAL LEU SEQRES 1 D 175 MET GLU THR TYR PRO ILE THR VAL GLY GLY VAL THR ARG SEQRES 2 D 175 HIS VAL PRO LEU ILE GLU PRO LEU PRO GLY ARG ARG ILE SEQRES 3 D 175 PRO LEU VAL GLU PHE LEU GLY ASP PRO GLU PHE THR ARG SEQRES 4 D 175 ALA ALA ALA GLU ALA LEU ARG PRO LEU VAL PRO LYS GLU SEQRES 5 D 175 ALA GLU ILE LEU PHE THR THR GLU THR SER PRO ILE PRO SEQRES 6 D 175 LEU THR HIS VAL LEU ALA GLU ALA LEU GLY LEU PRO TYR SEQRES 7 D 175 VAL VAL ALA ARG ARG ARG ARG ARG PRO TYR MET GLU ASP SEQRES 8 D 175 PRO ILE ILE GLN GLU VAL GLN THR LEU THR LEU GLY VAL SEQRES 9 D 175 GLY GLU VAL LEU TRP LEU ASP ARG ARG PHE ALA GLU LYS SEQRES 10 D 175 LEU LEU ASN GLN ARG VAL VAL LEU VAL SER ASP VAL VAL SEQRES 11 D 175 ALA SER GLY GLU THR MET ARG ALA MET GLU LYS MET VAL SEQRES 12 D 175 LEU ARG ALA GLY GLY HIS VAL VAL ALA ARG LEU ALA VAL SEQRES 13 D 175 PHE ARG GLN GLY THR PRO GLY LEU ALA VAL ASP THR VAL SEQRES 14 D 175 ALA GLU LEU PRO VAL LEU SEQRES 1 E 175 MET GLU THR TYR PRO ILE THR VAL GLY GLY VAL THR ARG SEQRES 2 E 175 HIS VAL PRO LEU ILE GLU PRO LEU PRO GLY ARG ARG ILE SEQRES 3 E 175 PRO LEU VAL GLU PHE LEU GLY ASP PRO GLU PHE THR ARG SEQRES 4 E 175 ALA ALA ALA GLU ALA LEU ARG PRO LEU VAL PRO LYS GLU SEQRES 5 E 175 ALA GLU ILE LEU PHE THR THR GLU THR SER PRO ILE PRO SEQRES 6 E 175 LEU THR HIS VAL LEU ALA GLU ALA LEU GLY LEU PRO TYR SEQRES 7 E 175 VAL VAL ALA ARG ARG ARG ARG ARG PRO TYR MET GLU ASP SEQRES 8 E 175 PRO ILE ILE GLN GLU VAL GLN THR LEU THR LEU GLY VAL SEQRES 9 E 175 GLY GLU VAL LEU TRP LEU ASP ARG ARG PHE ALA GLU LYS SEQRES 10 E 175 LEU LEU ASN GLN ARG VAL VAL LEU VAL SER ASP VAL VAL SEQRES 11 E 175 ALA SER GLY GLU THR MET ARG ALA MET GLU LYS MET VAL SEQRES 12 E 175 LEU ARG ALA GLY GLY HIS VAL VAL ALA ARG LEU ALA VAL SEQRES 13 E 175 PHE ARG GLN GLY THR PRO GLY LEU ALA VAL ASP THR VAL SEQRES 14 E 175 ALA GLU LEU PRO VAL LEU HET ACY A2002 4 HET CL B1001 1 HET CL B1002 1 HET ACY B2001 4 HET CL C1003 1 HET CA C1006 1 HET ACY C2003 4 HET CL D1004 1 HET ACY D2004 4 HET CL E1005 1 HETNAM ACY ACETIC ACID HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION FORMUL 6 ACY 4(C2 H4 O2) FORMUL 7 CL 5(CL 1-) FORMUL 11 CA CA 2+ FORMUL 16 HOH *373(H2 O) HELIX 1 1 ASP A 34 ARG A 46 1 13 HELIX 2 2 PRO A 47 VAL A 49 5 3 HELIX 3 3 SER A 62 GLY A 75 1 14 HELIX 4 4 ASP A 111 LEU A 119 1 9 HELIX 5 5 GLY A 133 ALA A 146 1 14 HELIX 6 6 ASP B 34 ARG B 46 1 13 HELIX 7 7 PRO B 47 VAL B 49 5 3 HELIX 8 8 SER B 62 GLY B 75 1 14 HELIX 9 9 ASP B 111 GLU B 116 1 6 HELIX 10 10 GLY B 133 GLY B 147 1 15 HELIX 11 11 ASP C 34 ARG C 46 1 13 HELIX 12 12 PRO C 47 VAL C 49 5 3 HELIX 13 13 SER C 62 GLY C 75 1 14 HELIX 14 14 ASP C 111 LYS C 117 1 7 HELIX 15 15 GLY C 133 ALA C 146 1 14 HELIX 16 16 ASP D 34 ARG D 46 1 13 HELIX 17 17 PRO D 47 VAL D 49 5 3 HELIX 18 18 SER D 62 GLY D 75 1 14 HELIX 19 19 ASP D 111 LYS D 117 1 7 HELIX 20 20 GLY D 133 ALA D 146 1 14 HELIX 21 21 PRO E 35 ARG E 46 1 12 HELIX 22 22 PRO E 47 VAL E 49 5 3 HELIX 23 23 SER E 62 GLU E 72 1 11 HELIX 24 24 ASP E 111 LYS E 117 1 7 SHEET 1 A 2 TYR A 4 VAL A 8 0 SHEET 2 A 2 VAL A 11 VAL A 15 -1 O VAL A 15 N TYR A 4 SHEET 1 B 2 LEU A 17 LEU A 21 0 SHEET 2 B 2 ARG A 24 PRO A 27 -1 O ILE A 26 N ILE A 18 SHEET 1 C 5 TYR A 78 ALA A 81 0 SHEET 2 C 5 ILE A 55 THR A 59 1 N THR A 58 O ALA A 81 SHEET 3 C 5 ARG A 122 VAL A 130 1 O VAL A 126 N PHE A 57 SHEET 4 C 5 HIS A 149 ARG A 158 1 O HIS A 149 N VAL A 123 SHEET 5 C 5 ASP A 167 GLU A 171 1 O ASP A 167 N ARG A 153 SHEET 1 D 2 ILE A 93 GLU A 96 0 SHEET 2 D 2 VAL A 107 LEU A 110 -1 O LEU A 108 N GLN A 95 SHEET 1 E 3 THR B 3 VAL B 8 0 SHEET 2 E 3 VAL B 11 LEU B 21 -1 O VAL B 15 N TYR B 4 SHEET 3 E 3 ARG B 24 PRO B 27 -1 O ILE B 26 N ILE B 18 SHEET 1 F 5 TYR B 78 ALA B 81 0 SHEET 2 F 5 ILE B 55 THR B 59 1 N THR B 58 O ALA B 81 SHEET 3 F 5 ARG B 122 VAL B 130 1 O VAL B 126 N PHE B 57 SHEET 4 F 5 HIS B 149 GLN B 159 1 O LEU B 154 N LEU B 125 SHEET 5 F 5 ASP B 167 LEU B 172 1 O LEU B 172 N ARG B 158 SHEET 1 G 2 ILE B 93 GLU B 96 0 SHEET 2 G 2 VAL B 107 LEU B 110 -1 O LEU B 108 N GLN B 95 SHEET 1 H 3 THR C 3 VAL C 8 0 SHEET 2 H 3 VAL C 11 LEU C 21 -1 O ARG C 13 N ILE C 6 SHEET 3 H 3 ARG C 24 PRO C 27 -1 O ARG C 24 N LEU C 21 SHEET 1 I 5 TYR C 78 ALA C 81 0 SHEET 2 I 5 ILE C 55 THR C 59 1 N THR C 58 O ALA C 81 SHEET 3 I 5 ARG C 122 VAL C 130 1 O VAL C 126 N PHE C 57 SHEET 4 I 5 HIS C 149 GLN C 159 1 O LEU C 154 N LEU C 125 SHEET 5 I 5 ASP C 167 LEU C 172 1 O LEU C 172 N ARG C 158 SHEET 1 J 2 ILE C 93 GLU C 96 0 SHEET 2 J 2 VAL C 107 LEU C 110 -1 O LEU C 108 N GLN C 95 SHEET 1 K 3 THR D 3 VAL D 8 0 SHEET 2 K 3 VAL D 11 LEU D 21 -1 O ARG D 13 N ILE D 6 SHEET 3 K 3 ARG D 24 PRO D 27 -1 O ILE D 26 N ILE D 18 SHEET 1 L 5 TYR D 78 ALA D 81 0 SHEET 2 L 5 ILE D 55 THR D 59 1 N THR D 58 O ALA D 81 SHEET 3 L 5 ARG D 122 VAL D 130 1 O VAL D 126 N PHE D 57 SHEET 4 L 5 HIS D 149 GLN D 159 1 O LEU D 154 N LEU D 125 SHEET 5 L 5 ASP D 167 LEU D 172 1 O LEU D 172 N ARG D 158 SHEET 1 M 2 ILE D 93 GLU D 96 0 SHEET 2 M 2 VAL D 107 LEU D 110 -1 O LEU D 108 N GLN D 95 SHEET 1 N 3 THR E 3 VAL E 8 0 SHEET 2 N 3 VAL E 11 LEU E 21 -1 O VAL E 11 N VAL E 8 SHEET 3 N 3 ARG E 24 PRO E 27 -1 O ILE E 26 N ILE E 18 SHEET 1 O 5 TYR E 78 ALA E 81 0 SHEET 2 O 5 ILE E 55 THR E 59 1 N LEU E 56 O VAL E 79 SHEET 3 O 5 VAL E 123 VAL E 130 1 O VAL E 124 N PHE E 57 SHEET 4 O 5 LEU E 154 ARG E 158 1 O LEU E 154 N LEU E 125 SHEET 5 O 5 ASP E 167 THR E 168 1 O ASP E 167 N ALA E 155 SHEET 1 P 2 ILE E 93 GLN E 95 0 SHEET 2 P 2 LEU E 108 LEU E 110 -1 O LEU E 110 N ILE E 93 LINK OE2 GLU C 54 CA CA C1006 1555 1555 2.31 LINK CA CA C1006 O HOH C2009 1555 1555 2.45 LINK CA CA C1006 O HOH C2013 1555 1555 2.28 LINK CA CA C1006 O HOH C2020 1555 1555 2.36 LINK CA CA C1006 O HOH C2025 1555 1555 2.45 LINK CA CA C1006 OE1 GLU D 171 1555 4555 2.59 LINK CA CA C1006 OE2 GLU D 171 1555 4555 2.50 CISPEP 1 GLU A 60 THR A 61 0 0.81 CISPEP 2 GLU B 60 THR B 61 0 0.66 CISPEP 3 GLU C 60 THR C 61 0 0.96 CISPEP 4 GLU D 60 THR D 61 0 0.25 CISPEP 5 GLU E 60 THR E 61 0 0.66 SITE 1 AC1 3 THR A 61 ARG B 82 ARG B 86 SITE 1 AC2 2 THR B 61 SER B 62 SITE 1 AC3 3 THR C 61 SER C 62 ARG D 82 SITE 1 AC4 3 ARG C 82 THR D 61 SER D 62 SITE 1 AC5 1 ARG E 82 SITE 1 AC6 6 GLU C 54 HOH C2009 HOH C2013 HOH C2020 SITE 2 AC6 6 HOH C2025 GLU D 171 SITE 1 AC7 7 ALA B 131 SER B 132 GLY B 133 GLU B 134 SITE 2 AC7 7 THR B 135 HOH B2010 HOH B2079 SITE 1 AC8 6 ALA A 131 SER A 132 GLY A 133 GLU A 134 SITE 2 AC8 6 THR A 135 HOH A2014 SITE 1 AC9 7 VAL C 130 ALA C 131 SER C 132 GLY C 133 SITE 2 AC9 7 GLU C 134 THR C 135 HOH C2033 SITE 1 BC1 7 ALA D 131 SER D 132 GLY D 133 GLU D 134 SITE 2 BC1 7 THR D 135 HOH D2008 HOH D2034 CRYST1 167.419 61.405 102.389 90.00 93.97 90.00 C 1 2 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005973 0.000000 0.000415 0.00000 SCALE2 0.000000 0.016285 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009790 0.00000