HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 10-MAR-04 1VCS TITLE SOLUTION STRUCTURE OF RSGI RUH-009, AN N-TERMINAL DOMAIN OF VTI1A [MUS TITLE 2 MUSCULUS] COMPND MOL_ID: 1; COMPND 2 MOLECULE: VESICLE TRANSPORT THROUGH INTERACTION WITH T-SNARES HOMOLOG COMPND 3 1A; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: N-TERMINAL DOMAIN (RESIDUES 6-94); COMPND 6 SYNONYM: VESICLE TRANSPORT V-SNARE PROTEIN VTI1-LIKE 2, VTI1-RP2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MUS MUSCULUS ADULT MALE LUNG CDNA, RIKEN FULL-LENGTH ENRICHED SOURCE 6 LIBRARY, CLONE:1200014A22 PRODUCT: VTI1A (AMINO ACID 6-94); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P030825-55; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS SYSTEM KEYWDS SNARE, HABC DOMAIN, VTI1, UP AND DOWN THREE HELIX BUNDLE, LEFT-HANDED KEYWDS 2 TWIST, VESICLE TRANSPORT, MEMBRANE FUSION, STRUCTURAL GENOMICS, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN KEYWDS 4 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.ABE,H.HIROTA,T.TOMIZAWA,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 27-DEC-23 1VCS 1 REMARK REVDAT 3 02-MAR-22 1VCS 1 REMARK SEQADV REVDAT 2 24-FEB-09 1VCS 1 VERSN REVDAT 1 03-MAY-05 1VCS 0 JRNL AUTH T.ABE,H.HIROTA,T.TOMIZAWA,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-009, AN N-TERMINAL DOMAIN OF JRNL TITL 2 VTI1A [MUS MUSCULUS] JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.7 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VCS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000006470. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM RSGI RUH-009 U-15N, 13C; REMARK 210 20MM D-TRIS-HCL BUFFER; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.893 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYANAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 36 H VAL A 40 1.50 REMARK 500 O LEU A 53 H MET A 57 1.51 REMARK 500 O GLU A 11 H ALA A 15 1.53 REMARK 500 O GLN A 38 H ASN A 42 1.60 REMARK 500 O TYR A 79 H MET A 83 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 89.27 -179.45 REMARK 500 1 TYR A 10 -63.06 -126.17 REMARK 500 1 ARG A 69 -29.45 -39.37 REMARK 500 1 MET A 71 -59.07 69.29 REMARK 500 1 THR A 88 -62.19 -98.93 REMARK 500 1 SER A 97 58.53 -108.16 REMARK 500 1 SER A 100 87.30 47.72 REMARK 500 2 SER A 6 -71.80 -89.55 REMARK 500 2 GLN A 67 -39.94 -173.29 REMARK 500 2 ARG A 69 -83.65 -61.61 REMARK 500 2 TYR A 72 -37.33 -38.13 REMARK 500 2 MET A 83 -71.26 -41.91 REMARK 500 3 SER A 6 -60.27 -157.36 REMARK 500 3 TYR A 10 -67.10 -135.89 REMARK 500 3 LEU A 17 -73.32 -56.55 REMARK 500 3 GLU A 55 -76.15 -56.22 REMARK 500 3 GLN A 67 -41.90 -166.50 REMARK 500 3 ARG A 69 -81.71 -49.43 REMARK 500 3 TYR A 72 -33.06 -36.29 REMARK 500 3 SER A 97 -50.60 -174.50 REMARK 500 4 SER A 2 90.24 42.46 REMARK 500 4 ARG A 69 -28.92 -39.64 REMARK 500 4 MET A 71 -66.34 64.14 REMARK 500 4 SER A 97 78.33 178.55 REMARK 500 4 SER A 101 87.49 58.62 REMARK 500 5 ARG A 69 42.83 -90.12 REMARK 500 5 MET A 83 -71.15 -38.07 REMARK 500 5 ALA A 96 -169.65 44.88 REMARK 500 5 SER A 97 -77.95 63.72 REMARK 500 5 SER A 100 114.71 -39.35 REMARK 500 5 SER A 101 -66.34 70.20 REMARK 500 6 SER A 2 133.81 -178.41 REMARK 500 6 SER A 3 169.45 66.44 REMARK 500 6 TYR A 10 -63.85 -136.84 REMARK 500 6 LEU A 17 -70.48 -55.47 REMARK 500 6 SER A 97 -51.72 -150.64 REMARK 500 7 SER A 2 87.91 -163.93 REMARK 500 7 GLU A 8 53.68 -152.33 REMARK 500 7 ARG A 69 -175.88 -62.45 REMARK 500 7 ILE A 95 46.49 -90.05 REMARK 500 8 SER A 2 93.35 46.05 REMARK 500 8 GLU A 8 142.51 62.69 REMARK 500 8 TYR A 10 -61.66 -125.69 REMARK 500 8 LEU A 17 -72.79 -49.19 REMARK 500 8 THR A 18 -37.42 -38.95 REMARK 500 8 ARG A 69 -36.98 -38.02 REMARK 500 8 MET A 71 -53.83 81.26 REMARK 500 8 ALA A 96 56.78 38.65 REMARK 500 8 SER A 101 113.76 61.35 REMARK 500 9 SER A 3 -61.11 -102.34 REMARK 500 REMARK 500 THIS ENTRY HAS 122 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007006799 RELATED DB: TARGETDB DBREF 1VCS A 8 96 UNP O89116 VTI1A_MOUSE 6 94 SEQADV 1VCS GLY A 1 UNP O89116 CLONING ARTIFACT SEQADV 1VCS SER A 2 UNP O89116 CLONING ARTIFACT SEQADV 1VCS SER A 3 UNP O89116 CLONING ARTIFACT SEQADV 1VCS GLY A 4 UNP O89116 CLONING ARTIFACT SEQADV 1VCS SER A 5 UNP O89116 CLONING ARTIFACT SEQADV 1VCS SER A 6 UNP O89116 CLONING ARTIFACT SEQADV 1VCS GLY A 7 UNP O89116 CLONING ARTIFACT SEQADV 1VCS SER A 97 UNP O89116 CLONING ARTIFACT SEQADV 1VCS GLY A 98 UNP O89116 CLONING ARTIFACT SEQADV 1VCS PRO A 99 UNP O89116 CLONING ARTIFACT SEQADV 1VCS SER A 100 UNP O89116 CLONING ARTIFACT SEQADV 1VCS SER A 101 UNP O89116 CLONING ARTIFACT SEQADV 1VCS GLY A 102 UNP O89116 CLONING ARTIFACT SEQRES 1 A 102 GLY SER SER GLY SER SER GLY GLU GLY TYR GLU GLN ASP SEQRES 2 A 102 PHE ALA VAL LEU THR ALA GLU ILE THR SER LYS ILE ALA SEQRES 3 A 102 ARG VAL PRO ARG LEU PRO PRO ASP GLU LYS LYS GLN MET SEQRES 4 A 102 VAL ALA ASN VAL GLU LYS GLN LEU GLU GLU ALA ARG GLU SEQRES 5 A 102 LEU LEU GLU GLN MET ASP LEU GLU VAL ARG GLU ILE PRO SEQRES 6 A 102 PRO GLN SER ARG GLY MET TYR SER ASN ARG MET ARG SER SEQRES 7 A 102 TYR LYS GLN GLU MET GLY LYS LEU GLU THR ASP PHE LYS SEQRES 8 A 102 ARG SER ARG ILE ALA SER GLY PRO SER SER GLY HELIX 1 1 GLU A 11 ARG A 27 1 17 HELIX 2 2 PRO A 29 ARG A 30 5 2 HELIX 3 3 GLU A 35 VAL A 61 1 27 HELIX 4 4 MET A 71 ILE A 95 1 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1