data_1VCX # _entry.id 1VCX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VCX pdb_00001vcx 10.2210/pdb1vcx/pdb RCSB RCSB006475 ? ? WWPDB D_1000006475 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VCX _pdbx_database_status.recvd_initial_deposition_date 2004-03-17 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kurihara, K.' 1 ? 'Tanaka, I.' 2 ? 'Chatake, T.' 3 ? 'Adams, M.W.W.' 4 ? 'Jenney Jr., F.E.' 5 ? 'Moiseeva, N.' 6 ? 'Bau, R.' 7 ? 'Niimura, N.' 8 ? # _citation.id primary _citation.title ;Neutron crystallographic study on rubredoxin from Pyrococcus furiosus by BIX-3, a single-crystal diffractometer for biomacromolecules ; _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 101 _citation.page_first 11215 _citation.page_last 11220 _citation.year 2004 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15272083 _citation.pdbx_database_id_DOI 10.1073/pnas.0403807101 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kurihara, K.' 1 ? primary 'Tanaka, I.' 2 ? primary 'Chatake, T.' 3 ? primary 'Adams, M.W.W.' 4 ? primary 'Jenney Jr., F.E.' 5 ? primary 'Moiseeva, N.' 6 ? primary 'Bau, R.' 7 ? primary 'Niimura, N.' 8 ? # _cell.entry_id 1VCX _cell.length_a 34.320 _cell.length_b 35.310 _cell.length_c 44.230 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VCX _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Rubredoxin 5900.532 1 ? ? ? ? 2 non-polymer syn 'FE (III) ION' 55.845 1 ? ? ? ? 3 water nat water 18.015 37 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PF Rd' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED _entity_poly.pdbx_seq_one_letter_code_can AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LYS n 1 3 TRP n 1 4 VAL n 1 5 CYS n 1 6 LYS n 1 7 ILE n 1 8 CYS n 1 9 GLY n 1 10 TYR n 1 11 ILE n 1 12 TYR n 1 13 ASP n 1 14 GLU n 1 15 ASP n 1 16 ALA n 1 17 GLY n 1 18 ASP n 1 19 PRO n 1 20 ASP n 1 21 ASN n 1 22 GLY n 1 23 ILE n 1 24 SER n 1 25 PRO n 1 26 GLY n 1 27 THR n 1 28 LYS n 1 29 PHE n 1 30 GLU n 1 31 GLU n 1 32 LEU n 1 33 PRO n 1 34 ASP n 1 35 ASP n 1 36 TRP n 1 37 VAL n 1 38 CYS n 1 39 PRO n 1 40 ILE n 1 41 CYS n 1 42 GLY n 1 43 ALA n 1 44 PRO n 1 45 LYS n 1 46 SER n 1 47 GLU n 1 48 PHE n 1 49 GLU n 1 50 LYS n 1 51 LEU n 1 52 GLU n 1 53 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pyrococcus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus furiosus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2261 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21-DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pT7-7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RUBR_PYRFU _struct_ref.pdbx_db_accession P24297 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VCX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 53 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P24297 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 53 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 53 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DOD non-polymer . 'DEUTERATED WATER' ? 'D2 O' 20.028 FE non-polymer . 'FE (III) ION' ? 'Fe 3' 55.845 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1VCX _exptl.method 'NEUTRON DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method Macroseeding _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details 'sodium dihydrogen phosphate, dipotassium hydrogen phosphate, pH 8.0, Macroseeding, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MACSCIENCE DIP100' _diffrn_detector.pdbx_collection_date 1999-08-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'elastically-bent perfect Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type neutron # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 2.33 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'NUCLEAR REACTOR' _diffrn_source.type 'JRR-3M BEAMLINE 1G-A' _diffrn_source.pdbx_synchrotron_site JRR-3M _diffrn_source.pdbx_synchrotron_beamline 1G-A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 2.33 # _reflns.entry_id 1VCX _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 1.50 _reflns.number_obs 7417 _reflns.number_all ? _reflns.percent_possible_obs 81.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.096 _reflns.pdbx_netI_over_sigmaI 8.5 _reflns.B_iso_Wilson_estimate 6.4 _reflns.pdbx_redundancy 3.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all 53.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.232 _reflns_shell.meanI_over_sigI_obs 3.1 _reflns_shell.pdbx_redundancy 1.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 469 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1VCX _refine.ls_number_reflns_obs 7286 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 103355.67 _refine.pdbx_data_cutoff_low_absF .000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.60 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 80.5 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.186 _refine.ls_R_factor_R_free 0.217 _refine.ls_R_factor_R_free_error .008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.8 _refine.ls_number_reflns_R_free 789 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 11.9 _refine.aniso_B[1][1] -.35 _refine.aniso_B[2][2] .03 _refine.aniso_B[3][3] .32 _refine.aniso_B[1][2] .00 _refine.aniso_B[1][3] .00 _refine.aniso_B[2][3] .00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.05010384 _refine.solvent_model_param_bsol 100 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;X-PLOR 3.851 was also used for the refinement. THE STANDARD TOPOLOGY AND PARAMETER FILES WERE CHANGED FOR HYDROGEN AND DEUTERIUM ATOM PARAMETERS TO MEET THE REQUIREMENTS OF THE NEUTRON STRUCTURE REFINEMENT. ; _refine.pdbx_starting_model 'PDB ENTRY 1BRF' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD TARGET USING AMPLITUDES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'NEUTRON DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1VCX _refine_analyze.Luzzati_coordinate_error_obs .16 _refine_analyze.Luzzati_sigma_a_obs .15 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free .19 _refine_analyze.Luzzati_sigma_a_free .17 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'NEUTRON DIFFRACTION' # _refine_hist.pdbx_refine_id 'NEUTRON DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 413 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 451 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 27.60 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d .010 ? ? ? 'NEUTRON DIFFRACTION' ? c_angle_deg 1.24 ? ? ? 'NEUTRON DIFFRACTION' ? c_dihedral_angle_d 25.8 ? ? ? 'NEUTRON DIFFRACTION' ? c_improper_angle_d 1.20 ? ? ? 'NEUTRON DIFFRACTION' ? c_mcbond_it 1.33 1.50 ? ? 'NEUTRON DIFFRACTION' ? c_mcangle_it 2.19 2.00 ? ? 'NEUTRON DIFFRACTION' ? c_scbond_it 1.89 2.00 ? ? 'NEUTRON DIFFRACTION' ? c_scangle_it 2.49 2.50 ? ? 'NEUTRON DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.55 _refine_ls_shell.number_reflns_R_work 416 _refine_ls_shell.R_factor_R_work 0.271 _refine_ls_shell.percent_reflns_obs 52.5 _refine_ls_shell.R_factor_R_free 0.298 _refine_ls_shell.R_factor_R_free_error .043 _refine_ls_shell.percent_reflns_R_free 10.3 _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.number_reflns_obs 464 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'NEUTRON DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN.PARAM PROTEIN-ALLHDG.TOP 'NEUTRON DIFFRACTION' 2 WATER.PARAM WATER.TOP 'NEUTRON DIFFRACTION' # _struct.entry_id 1VCX _struct.title 'Neutron Crystal Structure of the Wild Type Rubredoxin from Pyrococcus Furiosus at 1.5A Resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VCX _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text ;Neutron structure, Hydrogen atom position, Hydration water structure, Hydrogen/Deuterium exchange, Iron-sulfur core, N-terminal region, ELECTRON TRANSPORT ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 18 ? GLY A 22 ? ASP A 18 GLY A 22 5 ? 5 HELX_P HELX_P2 2 LYS A 28 ? LEU A 32 ? LYS A 28 LEU A 32 5 ? 5 HELX_P HELX_P3 3 PRO A 44 ? SER A 46 ? PRO A 44 SER A 46 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A ILE 11 O ? ? ? 1_555 C DOD . O ? ? A ILE 11 A DOD 120 1_555 ? ? ? ? ? ? ? 1.814 ? ? metalc1 metalc ? ? A CYS 5 SG ? ? ? 1_555 B FE . FE ? ? A CYS 5 A FE 54 1_555 ? ? ? ? ? ? ? 2.238 ? ? metalc2 metalc ? ? A CYS 8 SG ? ? ? 1_555 B FE . FE ? ? A CYS 8 A FE 54 1_555 ? ? ? ? ? ? ? 2.249 ? ? metalc3 metalc ? ? A CYS 38 SG ? ? ? 1_555 B FE . FE ? ? A CYS 38 A FE 54 1_555 ? ? ? ? ? ? ? 2.243 ? ? metalc4 metalc ? ? A CYS 41 SG ? ? ? 1_555 B FE . FE ? ? A CYS 41 A FE 54 1_555 ? ? ? ? ? ? ? 2.246 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 11 ? ASP A 13 ? ILE A 11 ASP A 13 A 2 LYS A 2 ? CYS A 5 ? LYS A 2 CYS A 5 A 3 PHE A 48 ? LYS A 50 ? PHE A 48 LYS A 50 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 12 ? O TYR A 12 N TRP A 3 ? N TRP A 3 A 2 3 N VAL A 4 ? N VAL A 4 O GLU A 49 ? O GLU A 49 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id FE _struct_site.pdbx_auth_seq_id 54 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE FE A 54' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 5 ? CYS A 5 . ? 1_555 ? 2 AC1 4 CYS A 8 ? CYS A 8 . ? 1_555 ? 3 AC1 4 CYS A 38 ? CYS A 38 . ? 1_555 ? 4 AC1 4 CYS A 41 ? CYS A 41 . ? 1_555 ? # _database_PDB_matrix.entry_id 1VCX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] .000000 _database_PDB_matrix.origx[1][3] .000000 _database_PDB_matrix.origx[2][1] .000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] .000000 _database_PDB_matrix.origx[3][1] .000000 _database_PDB_matrix.origx[3][2] .000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] .00000 _database_PDB_matrix.origx_vector[2] .00000 _database_PDB_matrix.origx_vector[3] .00000 # _atom_sites.entry_id 1VCX _atom_sites.fract_transf_matrix[1][1] .029138 _atom_sites.fract_transf_matrix[1][2] .000000 _atom_sites.fract_transf_matrix[1][3] .000000 _atom_sites.fract_transf_matrix[2][1] .000000 _atom_sites.fract_transf_matrix[2][2] .028321 _atom_sites.fract_transf_matrix[2][3] .000000 _atom_sites.fract_transf_matrix[3][1] .000000 _atom_sites.fract_transf_matrix[3][2] .000000 _atom_sites.fract_transf_matrix[3][3] .022609 _atom_sites.fract_transf_vector[1] .00000 _atom_sites.fract_transf_vector[2] .00000 _atom_sites.fract_transf_vector[3] .00000 # loop_ _atom_type.symbol C D FE H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 TRP 3 3 3 TRP TRP A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 CYS 8 8 8 CYS CYS A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 TRP 36 36 36 TRP TRP A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 CYS 41 41 41 CYS CYS A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 ASP 53 53 53 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE 1 54 54 FE FE A . C 3 DOD 1 101 101 DOD DOD A . C 3 DOD 2 102 102 DOD DOD A . C 3 DOD 3 103 103 DOD DOD A . C 3 DOD 4 104 104 DOD DOD A . C 3 DOD 5 105 105 DOD DOD A . C 3 DOD 6 106 106 DOD DOD A . C 3 DOD 7 107 107 DOD DOD A . C 3 DOD 8 108 108 DOD DOD A . C 3 DOD 9 109 109 DOD DOD A . C 3 DOD 10 110 110 DOD DOD A . C 3 DOD 11 111 111 DOD DOD A . C 3 DOD 12 112 112 DOD DOD A . C 3 DOD 13 113 113 DOD DOD A . C 3 DOD 14 114 114 DOD DOD A . C 3 DOD 15 115 115 DOD DOD A . C 3 DOD 16 116 116 DOD DOD A . C 3 DOD 17 117 117 DOD DOD A . C 3 DOD 18 118 118 DOD DOD A . C 3 DOD 19 119 119 DOD DOD A . C 3 DOD 20 120 120 DOD DOD A . C 3 DOD 21 121 121 DOD DOD A . C 3 DOD 22 122 122 DOD DOD A . C 3 DOD 23 123 123 DOD DOD A . C 3 DOD 24 124 124 DOD DOD A . C 3 DOD 25 125 125 DOD DOD A . C 3 DOD 26 126 126 DOD DOD A . C 3 DOD 27 127 127 DOD DOD A . C 3 DOD 28 128 128 DOD DOD A . C 3 DOD 29 129 129 DOD DOD A . C 3 DOD 30 130 130 DOD DOD A . C 3 DOD 31 131 131 DOD DOD A . C 3 DOD 32 132 132 DOD DOD A . C 3 DOD 33 133 133 DOD DOD A . C 3 DOD 34 134 134 DOD DOD A . C 3 DOD 35 135 135 DOD DOD A . C 3 DOD 36 136 136 DOD DOD A . C 3 DOD 37 137 137 DOD DOD A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 5 ? A CYS 5 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 8 ? A CYS 8 ? 1_555 116.8 ? 2 SG ? A CYS 5 ? A CYS 5 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 38 ? A CYS 38 ? 1_555 105.1 ? 3 SG ? A CYS 8 ? A CYS 8 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 38 ? A CYS 38 ? 1_555 104.6 ? 4 SG ? A CYS 5 ? A CYS 5 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 41 ? A CYS 41 ? 1_555 103.7 ? 5 SG ? A CYS 8 ? A CYS 8 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 41 ? A CYS 41 ? 1_555 118.5 ? 6 SG ? A CYS 38 ? A CYS 38 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 41 ? A CYS 41 ? 1_555 107.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-08-10 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-03-07 5 'Structure model' 1 4 2018-07-11 6 'Structure model' 1 5 2018-07-18 7 'Structure model' 1 6 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 5 'Structure model' 'Data collection' 6 6 'Structure model' 'Data collection' 7 7 'Structure model' 'Data collection' 8 7 'Structure model' 'Database references' 9 7 'Structure model' 'Derived calculations' 10 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_detector 2 4 'Structure model' diffrn_radiation 3 5 'Structure model' diffrn_radiation 4 5 'Structure model' diffrn_source 5 6 'Structure model' diffrn_radiation 6 7 'Structure model' chem_comp_atom 7 7 'Structure model' chem_comp_bond 8 7 'Structure model' database_2 9 7 'Structure model' pdbx_initial_refinement_model 10 7 'Structure model' struct_conn 11 7 'Structure model' struct_conn_type 12 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_detector.detector' 2 4 'Structure model' '_diffrn_detector.type' 3 4 'Structure model' '_diffrn_radiation.pdbx_diffrn_protocol' 4 4 'Structure model' '_diffrn_radiation.pdbx_monochromatic_or_laue_m_l' 5 5 'Structure model' '_diffrn_radiation.pdbx_scattering_type' 6 5 'Structure model' '_diffrn_source.pdbx_synchrotron_beamline' 7 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 8 5 'Structure model' '_diffrn_source.type' 9 6 'Structure model' '_diffrn_radiation.pdbx_diffrn_protocol' 10 6 'Structure model' '_diffrn_radiation.pdbx_monochromatic_or_laue_m_l' 11 7 'Structure model' '_database_2.pdbx_DOI' 12 7 'Structure model' '_database_2.pdbx_database_accession' 13 7 'Structure model' '_struct_conn.conn_type_id' 14 7 'Structure model' '_struct_conn.id' 15 7 'Structure model' '_struct_conn.pdbx_dist_value' 16 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 17 7 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 7 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 7 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 7 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 7 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 7 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 7 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 7 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 7 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 7 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 7 'Structure model' '_struct_conn.ptnr2_label_seq_id' 29 7 'Structure model' '_struct_conn_type.id' 30 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language CNS refinement 1.0 ? 1 ? ? ? ? DENZO 'data reduction' . ? 2 ? ? ? ? SCALEPACK 'data scaling' . ? 3 ? ? ? ? X-PLOR phasing . ? 4 ? ? ? ? CNS phasing . ? 5 ? ? ? ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 DOD _pdbx_validate_symm_contact.auth_seq_id_1 105 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 DOD _pdbx_validate_symm_contact.auth_seq_id_2 130 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 1.86 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 18 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -154.80 _pdbx_validate_torsion.psi 68.39 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 CYS N N N N 47 CYS CA C N R 48 CYS C C N N 49 CYS O O N N 50 CYS CB C N N 51 CYS SG S N N 52 CYS OXT O N N 53 CYS H H N N 54 CYS H2 H N N 55 CYS HA H N N 56 CYS HB2 H N N 57 CYS HB3 H N N 58 CYS HG H N N 59 CYS HXT H N N 60 DOD O O N N 61 DOD D1 D N N 62 DOD D2 D N N 63 FE FE FE N N 64 GLU N N N N 65 GLU CA C N S 66 GLU C C N N 67 GLU O O N N 68 GLU CB C N N 69 GLU CG C N N 70 GLU CD C N N 71 GLU OE1 O N N 72 GLU OE2 O N N 73 GLU OXT O N N 74 GLU H H N N 75 GLU H2 H N N 76 GLU HA H N N 77 GLU HB2 H N N 78 GLU HB3 H N N 79 GLU HG2 H N N 80 GLU HG3 H N N 81 GLU HE2 H N N 82 GLU HXT H N N 83 GLY N N N N 84 GLY CA C N N 85 GLY C C N N 86 GLY O O N N 87 GLY OXT O N N 88 GLY H H N N 89 GLY H2 H N N 90 GLY HA2 H N N 91 GLY HA3 H N N 92 GLY HXT H N N 93 ILE N N N N 94 ILE CA C N S 95 ILE C C N N 96 ILE O O N N 97 ILE CB C N S 98 ILE CG1 C N N 99 ILE CG2 C N N 100 ILE CD1 C N N 101 ILE OXT O N N 102 ILE H H N N 103 ILE H2 H N N 104 ILE HA H N N 105 ILE HB H N N 106 ILE HG12 H N N 107 ILE HG13 H N N 108 ILE HG21 H N N 109 ILE HG22 H N N 110 ILE HG23 H N N 111 ILE HD11 H N N 112 ILE HD12 H N N 113 ILE HD13 H N N 114 ILE HXT H N N 115 LEU N N N N 116 LEU CA C N S 117 LEU C C N N 118 LEU O O N N 119 LEU CB C N N 120 LEU CG C N N 121 LEU CD1 C N N 122 LEU CD2 C N N 123 LEU OXT O N N 124 LEU H H N N 125 LEU H2 H N N 126 LEU HA H N N 127 LEU HB2 H N N 128 LEU HB3 H N N 129 LEU HG H N N 130 LEU HD11 H N N 131 LEU HD12 H N N 132 LEU HD13 H N N 133 LEU HD21 H N N 134 LEU HD22 H N N 135 LEU HD23 H N N 136 LEU HXT H N N 137 LYS N N N N 138 LYS CA C N S 139 LYS C C N N 140 LYS O O N N 141 LYS CB C N N 142 LYS CG C N N 143 LYS CD C N N 144 LYS CE C N N 145 LYS NZ N N N 146 LYS OXT O N N 147 LYS H H N N 148 LYS H2 H N N 149 LYS HA H N N 150 LYS HB2 H N N 151 LYS HB3 H N N 152 LYS HG2 H N N 153 LYS HG3 H N N 154 LYS HD2 H N N 155 LYS HD3 H N N 156 LYS HE2 H N N 157 LYS HE3 H N N 158 LYS HZ1 H N N 159 LYS HZ2 H N N 160 LYS HZ3 H N N 161 LYS HXT H N N 162 PHE N N N N 163 PHE CA C N S 164 PHE C C N N 165 PHE O O N N 166 PHE CB C N N 167 PHE CG C Y N 168 PHE CD1 C Y N 169 PHE CD2 C Y N 170 PHE CE1 C Y N 171 PHE CE2 C Y N 172 PHE CZ C Y N 173 PHE OXT O N N 174 PHE H H N N 175 PHE H2 H N N 176 PHE HA H N N 177 PHE HB2 H N N 178 PHE HB3 H N N 179 PHE HD1 H N N 180 PHE HD2 H N N 181 PHE HE1 H N N 182 PHE HE2 H N N 183 PHE HZ H N N 184 PHE HXT H N N 185 PRO N N N N 186 PRO CA C N S 187 PRO C C N N 188 PRO O O N N 189 PRO CB C N N 190 PRO CG C N N 191 PRO CD C N N 192 PRO OXT O N N 193 PRO H H N N 194 PRO HA H N N 195 PRO HB2 H N N 196 PRO HB3 H N N 197 PRO HG2 H N N 198 PRO HG3 H N N 199 PRO HD2 H N N 200 PRO HD3 H N N 201 PRO HXT H N N 202 SER N N N N 203 SER CA C N S 204 SER C C N N 205 SER O O N N 206 SER CB C N N 207 SER OG O N N 208 SER OXT O N N 209 SER H H N N 210 SER H2 H N N 211 SER HA H N N 212 SER HB2 H N N 213 SER HB3 H N N 214 SER HG H N N 215 SER HXT H N N 216 THR N N N N 217 THR CA C N S 218 THR C C N N 219 THR O O N N 220 THR CB C N R 221 THR OG1 O N N 222 THR CG2 C N N 223 THR OXT O N N 224 THR H H N N 225 THR H2 H N N 226 THR HA H N N 227 THR HB H N N 228 THR HG1 H N N 229 THR HG21 H N N 230 THR HG22 H N N 231 THR HG23 H N N 232 THR HXT H N N 233 TRP N N N N 234 TRP CA C N S 235 TRP C C N N 236 TRP O O N N 237 TRP CB C N N 238 TRP CG C Y N 239 TRP CD1 C Y N 240 TRP CD2 C Y N 241 TRP NE1 N Y N 242 TRP CE2 C Y N 243 TRP CE3 C Y N 244 TRP CZ2 C Y N 245 TRP CZ3 C Y N 246 TRP CH2 C Y N 247 TRP OXT O N N 248 TRP H H N N 249 TRP H2 H N N 250 TRP HA H N N 251 TRP HB2 H N N 252 TRP HB3 H N N 253 TRP HD1 H N N 254 TRP HE1 H N N 255 TRP HE3 H N N 256 TRP HZ2 H N N 257 TRP HZ3 H N N 258 TRP HH2 H N N 259 TRP HXT H N N 260 TYR N N N N 261 TYR CA C N S 262 TYR C C N N 263 TYR O O N N 264 TYR CB C N N 265 TYR CG C Y N 266 TYR CD1 C Y N 267 TYR CD2 C Y N 268 TYR CE1 C Y N 269 TYR CE2 C Y N 270 TYR CZ C Y N 271 TYR OH O N N 272 TYR OXT O N N 273 TYR H H N N 274 TYR H2 H N N 275 TYR HA H N N 276 TYR HB2 H N N 277 TYR HB3 H N N 278 TYR HD1 H N N 279 TYR HD2 H N N 280 TYR HE1 H N N 281 TYR HE2 H N N 282 TYR HH H N N 283 TYR HXT H N N 284 VAL N N N N 285 VAL CA C N S 286 VAL C C N N 287 VAL O O N N 288 VAL CB C N N 289 VAL CG1 C N N 290 VAL CG2 C N N 291 VAL OXT O N N 292 VAL H H N N 293 VAL H2 H N N 294 VAL HA H N N 295 VAL HB H N N 296 VAL HG11 H N N 297 VAL HG12 H N N 298 VAL HG13 H N N 299 VAL HG21 H N N 300 VAL HG22 H N N 301 VAL HG23 H N N 302 VAL HXT H N N 303 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 CYS N CA sing N N 44 CYS N H sing N N 45 CYS N H2 sing N N 46 CYS CA C sing N N 47 CYS CA CB sing N N 48 CYS CA HA sing N N 49 CYS C O doub N N 50 CYS C OXT sing N N 51 CYS CB SG sing N N 52 CYS CB HB2 sing N N 53 CYS CB HB3 sing N N 54 CYS SG HG sing N N 55 CYS OXT HXT sing N N 56 DOD O D1 sing N N 57 DOD O D2 sing N N 58 GLU N CA sing N N 59 GLU N H sing N N 60 GLU N H2 sing N N 61 GLU CA C sing N N 62 GLU CA CB sing N N 63 GLU CA HA sing N N 64 GLU C O doub N N 65 GLU C OXT sing N N 66 GLU CB CG sing N N 67 GLU CB HB2 sing N N 68 GLU CB HB3 sing N N 69 GLU CG CD sing N N 70 GLU CG HG2 sing N N 71 GLU CG HG3 sing N N 72 GLU CD OE1 doub N N 73 GLU CD OE2 sing N N 74 GLU OE2 HE2 sing N N 75 GLU OXT HXT sing N N 76 GLY N CA sing N N 77 GLY N H sing N N 78 GLY N H2 sing N N 79 GLY CA C sing N N 80 GLY CA HA2 sing N N 81 GLY CA HA3 sing N N 82 GLY C O doub N N 83 GLY C OXT sing N N 84 GLY OXT HXT sing N N 85 ILE N CA sing N N 86 ILE N H sing N N 87 ILE N H2 sing N N 88 ILE CA C sing N N 89 ILE CA CB sing N N 90 ILE CA HA sing N N 91 ILE C O doub N N 92 ILE C OXT sing N N 93 ILE CB CG1 sing N N 94 ILE CB CG2 sing N N 95 ILE CB HB sing N N 96 ILE CG1 CD1 sing N N 97 ILE CG1 HG12 sing N N 98 ILE CG1 HG13 sing N N 99 ILE CG2 HG21 sing N N 100 ILE CG2 HG22 sing N N 101 ILE CG2 HG23 sing N N 102 ILE CD1 HD11 sing N N 103 ILE CD1 HD12 sing N N 104 ILE CD1 HD13 sing N N 105 ILE OXT HXT sing N N 106 LEU N CA sing N N 107 LEU N H sing N N 108 LEU N H2 sing N N 109 LEU CA C sing N N 110 LEU CA CB sing N N 111 LEU CA HA sing N N 112 LEU C O doub N N 113 LEU C OXT sing N N 114 LEU CB CG sing N N 115 LEU CB HB2 sing N N 116 LEU CB HB3 sing N N 117 LEU CG CD1 sing N N 118 LEU CG CD2 sing N N 119 LEU CG HG sing N N 120 LEU CD1 HD11 sing N N 121 LEU CD1 HD12 sing N N 122 LEU CD1 HD13 sing N N 123 LEU CD2 HD21 sing N N 124 LEU CD2 HD22 sing N N 125 LEU CD2 HD23 sing N N 126 LEU OXT HXT sing N N 127 LYS N CA sing N N 128 LYS N H sing N N 129 LYS N H2 sing N N 130 LYS CA C sing N N 131 LYS CA CB sing N N 132 LYS CA HA sing N N 133 LYS C O doub N N 134 LYS C OXT sing N N 135 LYS CB CG sing N N 136 LYS CB HB2 sing N N 137 LYS CB HB3 sing N N 138 LYS CG CD sing N N 139 LYS CG HG2 sing N N 140 LYS CG HG3 sing N N 141 LYS CD CE sing N N 142 LYS CD HD2 sing N N 143 LYS CD HD3 sing N N 144 LYS CE NZ sing N N 145 LYS CE HE2 sing N N 146 LYS CE HE3 sing N N 147 LYS NZ HZ1 sing N N 148 LYS NZ HZ2 sing N N 149 LYS NZ HZ3 sing N N 150 LYS OXT HXT sing N N 151 PHE N CA sing N N 152 PHE N H sing N N 153 PHE N H2 sing N N 154 PHE CA C sing N N 155 PHE CA CB sing N N 156 PHE CA HA sing N N 157 PHE C O doub N N 158 PHE C OXT sing N N 159 PHE CB CG sing N N 160 PHE CB HB2 sing N N 161 PHE CB HB3 sing N N 162 PHE CG CD1 doub Y N 163 PHE CG CD2 sing Y N 164 PHE CD1 CE1 sing Y N 165 PHE CD1 HD1 sing N N 166 PHE CD2 CE2 doub Y N 167 PHE CD2 HD2 sing N N 168 PHE CE1 CZ doub Y N 169 PHE CE1 HE1 sing N N 170 PHE CE2 CZ sing Y N 171 PHE CE2 HE2 sing N N 172 PHE CZ HZ sing N N 173 PHE OXT HXT sing N N 174 PRO N CA sing N N 175 PRO N CD sing N N 176 PRO N H sing N N 177 PRO CA C sing N N 178 PRO CA CB sing N N 179 PRO CA HA sing N N 180 PRO C O doub N N 181 PRO C OXT sing N N 182 PRO CB CG sing N N 183 PRO CB HB2 sing N N 184 PRO CB HB3 sing N N 185 PRO CG CD sing N N 186 PRO CG HG2 sing N N 187 PRO CG HG3 sing N N 188 PRO CD HD2 sing N N 189 PRO CD HD3 sing N N 190 PRO OXT HXT sing N N 191 SER N CA sing N N 192 SER N H sing N N 193 SER N H2 sing N N 194 SER CA C sing N N 195 SER CA CB sing N N 196 SER CA HA sing N N 197 SER C O doub N N 198 SER C OXT sing N N 199 SER CB OG sing N N 200 SER CB HB2 sing N N 201 SER CB HB3 sing N N 202 SER OG HG sing N N 203 SER OXT HXT sing N N 204 THR N CA sing N N 205 THR N H sing N N 206 THR N H2 sing N N 207 THR CA C sing N N 208 THR CA CB sing N N 209 THR CA HA sing N N 210 THR C O doub N N 211 THR C OXT sing N N 212 THR CB OG1 sing N N 213 THR CB CG2 sing N N 214 THR CB HB sing N N 215 THR OG1 HG1 sing N N 216 THR CG2 HG21 sing N N 217 THR CG2 HG22 sing N N 218 THR CG2 HG23 sing N N 219 THR OXT HXT sing N N 220 TRP N CA sing N N 221 TRP N H sing N N 222 TRP N H2 sing N N 223 TRP CA C sing N N 224 TRP CA CB sing N N 225 TRP CA HA sing N N 226 TRP C O doub N N 227 TRP C OXT sing N N 228 TRP CB CG sing N N 229 TRP CB HB2 sing N N 230 TRP CB HB3 sing N N 231 TRP CG CD1 doub Y N 232 TRP CG CD2 sing Y N 233 TRP CD1 NE1 sing Y N 234 TRP CD1 HD1 sing N N 235 TRP CD2 CE2 doub Y N 236 TRP CD2 CE3 sing Y N 237 TRP NE1 CE2 sing Y N 238 TRP NE1 HE1 sing N N 239 TRP CE2 CZ2 sing Y N 240 TRP CE3 CZ3 doub Y N 241 TRP CE3 HE3 sing N N 242 TRP CZ2 CH2 doub Y N 243 TRP CZ2 HZ2 sing N N 244 TRP CZ3 CH2 sing Y N 245 TRP CZ3 HZ3 sing N N 246 TRP CH2 HH2 sing N N 247 TRP OXT HXT sing N N 248 TYR N CA sing N N 249 TYR N H sing N N 250 TYR N H2 sing N N 251 TYR CA C sing N N 252 TYR CA CB sing N N 253 TYR CA HA sing N N 254 TYR C O doub N N 255 TYR C OXT sing N N 256 TYR CB CG sing N N 257 TYR CB HB2 sing N N 258 TYR CB HB3 sing N N 259 TYR CG CD1 doub Y N 260 TYR CG CD2 sing Y N 261 TYR CD1 CE1 sing Y N 262 TYR CD1 HD1 sing N N 263 TYR CD2 CE2 doub Y N 264 TYR CD2 HD2 sing N N 265 TYR CE1 CZ doub Y N 266 TYR CE1 HE1 sing N N 267 TYR CE2 CZ sing Y N 268 TYR CE2 HE2 sing N N 269 TYR CZ OH sing N N 270 TYR OH HH sing N N 271 TYR OXT HXT sing N N 272 VAL N CA sing N N 273 VAL N H sing N N 274 VAL N H2 sing N N 275 VAL CA C sing N N 276 VAL CA CB sing N N 277 VAL CA HA sing N N 278 VAL C O doub N N 279 VAL C OXT sing N N 280 VAL CB CG1 sing N N 281 VAL CB CG2 sing N N 282 VAL CB HB sing N N 283 VAL CG1 HG11 sing N N 284 VAL CG1 HG12 sing N N 285 VAL CG1 HG13 sing N N 286 VAL CG2 HG21 sing N N 287 VAL CG2 HG22 sing N N 288 VAL CG2 HG23 sing N N 289 VAL OXT HXT sing N N 290 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FE (III) ION' FE 3 water DOD # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1BRF _pdbx_initial_refinement_model.details 'PDB ENTRY 1BRF' #