HEADER    TRANSCRIPTION                           18-MAR-04   1VD4              
TITLE     SOLUTION STRUCTURE OF THE ZINC FINGER DOMAIN OF TFIIE ALPHA           
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT;        
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: ZINC FINGER DOMAIN;                                        
COMPND   5 SYNONYM: TFIIE-ALPHA, GENERAL TRANSCRIPTION FACTOR IIE 56 KDA        
COMPND   6 SUBUNIT, GENERAL TRANSCRIPTION FACTOR TFIIE ALPHA;                   
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: GTF2E1;                                                        
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS;                            
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PET11D                                    
KEYWDS    ZINC FINGER, TRANSCRIPTION                                            
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    M.OKUDA,A.TANAKA,Y.ARAI,M.SATOH,H.OKAMURA,A.NAGADOI,F.HANAOKA,        
AUTHOR   2 Y.OHKUMA,Y.NISHIMURA                                                 
REVDAT   4   27-DEC-23 1VD4    1       REMARK                                   
REVDAT   3   02-MAR-22 1VD4    1       REMARK LINK                              
REVDAT   2   24-FEB-09 1VD4    1       VERSN                                    
REVDAT   1   05-OCT-04 1VD4    0                                                
JRNL        AUTH   M.OKUDA,A.TANAKA,Y.ARAI,M.SATOH,H.OKAMURA,A.NAGADOI,         
JRNL        AUTH 2 F.HANAOKA,Y.OHKUMA,Y.NISHIMURA                               
JRNL        TITL   A NOVEL ZINC FINGER STRUCTURE IN THE LARGE SUBUNIT OF HUMAN  
JRNL        TITL 2 GENERAL TRANSCRIPTION FACTOR TFIIE.                          
JRNL        REF    J.BIOL.CHEM.                  V. 279 51395 2004              
JRNL        REFN                   ISSN 0021-9258                               
JRNL        PMID   15385556                                                     
JRNL        DOI    10.1074/JBC.M404722200                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XWINNMR 2.6, X-PLOR 3.851                            
REMARK   3   AUTHORS     : BRUKER (XWINNMR), BRUNGER (X-PLOR)                   
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1VD4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAR-04.                  
REMARK 100 THE DEPOSITION ID IS D_1000006482.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 305                                
REMARK 210  PH                             : 6.0                                
REMARK 210  IONIC STRENGTH                 : 50MM NACL                          
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 3-4MM TFIIE ALPHA ZINC FINGER      
REMARK 210                                   DOMAIN, U-15N, U-15N, 13C; 20MM    
REMARK 210                                   POTASSIUM PHOSPHATE BEFFER,        
REMARK 210                                   0.03MM ZNCL2, 5MM D-DTT; 3-4MM     
REMARK 210                                   TFIIE ALPHA ZINC FINGER DOMAIN,    
REMARK 210                                   U-15N, U-15N, 13C; 20MM            
REMARK 210                                   POTASSIUM PHOSPHATE BEFFER,        
REMARK 210                                   0.03MM ZNCL2, 5MM D-DTT            
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D NOESY; 3D_15N                   
REMARK 210                                   -SEPARATED_NOESY; HNHA; HNCA-J;    
REMARK 210                                   HNHB; HN(CO)HB; HNCG; HN(CO)CG;    
REMARK 210                                   3D_13C-SEPARATED_NOESY             
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ; 500 MHZ                   
REMARK 210  SPECTROMETER MODEL             : DRX                                
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE, NMRVIEW 5, X-PLOR 3.851   
REMARK 210   METHOD USED                   : DISTANCE GEOMETRY, SIMULATED       
REMARK 210                                   ANNEALING                          
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 20                  
REMARK 210                                                                      
REMARK 210 REMARK: THE STRUCTURES WERE DETERMINED USING TRIPLE-RESONANCE NMR    
REMARK 210  SPECTROSCOPY                                                        
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    LEU A   144     H    ARG A   153              1.56            
REMARK 500   OD1  ASP A   138     H    LEU A   139              1.59            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 GLU A 118      -36.12   -163.20                                   
REMARK 500  1 ARG A 119      -92.03   -138.92                                   
REMARK 500  1 ASP A 120      -96.50     56.80                                   
REMARK 500  1 THR A 122      -70.74   -110.33                                   
REMARK 500  1 ASN A 123      -44.74   -161.46                                   
REMARK 500  1 ARG A 124     -144.30   -128.30                                   
REMARK 500  1 SER A 126       75.20   -160.77                                   
REMARK 500  1 VAL A 131      -72.62    -96.21                                   
REMARK 500  1 SER A 133       29.16     47.31                                   
REMARK 500  1 SER A 134     -166.22    -76.67                                   
REMARK 500  1 THR A 137     -165.57   -115.32                                   
REMARK 500  1 CYS A 154      173.82    -45.50                                   
REMARK 500  1 HIS A 158       30.50     33.61                                   
REMARK 500  1 LYS A 170     -157.82   -101.18                                   
REMARK 500  1 ALA A 173      109.68     63.07                                   
REMARK 500  2 GLU A 115       63.93     64.38                                   
REMARK 500  2 GLU A 118      -73.27    -63.36                                   
REMARK 500  2 ASP A 120      -61.31   -171.55                                   
REMARK 500  2 THR A 122      -70.53   -128.94                                   
REMARK 500  2 ASN A 123      -52.74   -148.43                                   
REMARK 500  2 SER A 126      110.60   -160.20                                   
REMARK 500  2 VAL A 131      -73.72    -85.70                                   
REMARK 500  2 SER A 134     -166.78    -79.25                                   
REMARK 500  2 THR A 151     -156.71   -153.13                                   
REMARK 500  2 CYS A 154      176.02    -46.58                                   
REMARK 500  2 HIS A 158       31.83     30.63                                   
REMARK 500  2 SER A 166       67.93   -165.91                                   
REMARK 500  2 ALA A 167       51.17    -96.26                                   
REMARK 500  2 PRO A 169      -88.64    -73.36                                   
REMARK 500  2 LYS A 171      -69.54   -170.81                                   
REMARK 500  2 ALA A 173      -89.99     51.16                                   
REMARK 500  3 ASP A 117       23.35   -154.01                                   
REMARK 500  3 GLU A 118      127.57     66.47                                   
REMARK 500  3 ASP A 120       36.16     39.30                                   
REMARK 500  3 ASN A 123       36.17    -89.67                                   
REMARK 500  3 VAL A 131      -72.75    -95.04                                   
REMARK 500  3 SER A 133       29.64     48.04                                   
REMARK 500  3 CYS A 154      174.14    -46.82                                   
REMARK 500  3 HIS A 158       33.53     30.34                                   
REMARK 500  3 LYS A 170      155.52     67.11                                   
REMARK 500  4 ARG A 119     -167.80   -108.99                                   
REMARK 500  4 SER A 121       49.99   -144.91                                   
REMARK 500  4 VAL A 131      -74.72    -84.37                                   
REMARK 500  4 SER A 133       28.37     48.53                                   
REMARK 500  4 CYS A 154      176.30    -47.49                                   
REMARK 500  4 HIS A 158       28.70     37.38                                   
REMARK 500  4 LYS A 170       38.55   -148.75                                   
REMARK 500  4 ALA A 173     -175.58    -69.35                                   
REMARK 500  5 THR A 116      -78.46   -119.18                                   
REMARK 500  5 GLU A 118      -57.22     69.81                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     247 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500  1 ARG A 113         0.31    SIDE CHAIN                              
REMARK 500  1 ARG A 119         0.28    SIDE CHAIN                              
REMARK 500  1 ARG A 124         0.19    SIDE CHAIN                              
REMARK 500  1 ARG A 153         0.31    SIDE CHAIN                              
REMARK 500  1 ARG A 174         0.27    SIDE CHAIN                              
REMARK 500  2 ARG A 113         0.31    SIDE CHAIN                              
REMARK 500  2 ARG A 119         0.32    SIDE CHAIN                              
REMARK 500  2 ARG A 124         0.31    SIDE CHAIN                              
REMARK 500  2 ARG A 153         0.26    SIDE CHAIN                              
REMARK 500  2 ARG A 174         0.09    SIDE CHAIN                              
REMARK 500  3 ARG A 113         0.28    SIDE CHAIN                              
REMARK 500  3 ARG A 119         0.30    SIDE CHAIN                              
REMARK 500  3 ARG A 124         0.27    SIDE CHAIN                              
REMARK 500  3 ARG A 153         0.20    SIDE CHAIN                              
REMARK 500  3 ARG A 174         0.28    SIDE CHAIN                              
REMARK 500  4 ARG A 113         0.22    SIDE CHAIN                              
REMARK 500  4 ARG A 119         0.14    SIDE CHAIN                              
REMARK 500  4 ARG A 124         0.29    SIDE CHAIN                              
REMARK 500  4 ARG A 153         0.28    SIDE CHAIN                              
REMARK 500  4 ARG A 174         0.19    SIDE CHAIN                              
REMARK 500  5 ARG A 113         0.23    SIDE CHAIN                              
REMARK 500  5 ARG A 119         0.29    SIDE CHAIN                              
REMARK 500  5 ARG A 124         0.23    SIDE CHAIN                              
REMARK 500  5 ARG A 174         0.29    SIDE CHAIN                              
REMARK 500  6 ARG A 113         0.27    SIDE CHAIN                              
REMARK 500  6 ARG A 119         0.29    SIDE CHAIN                              
REMARK 500  6 ARG A 124         0.31    SIDE CHAIN                              
REMARK 500  6 ARG A 153         0.21    SIDE CHAIN                              
REMARK 500  6 ARG A 174         0.31    SIDE CHAIN                              
REMARK 500  7 ARG A 113         0.28    SIDE CHAIN                              
REMARK 500  7 ARG A 119         0.29    SIDE CHAIN                              
REMARK 500  7 ARG A 124         0.31    SIDE CHAIN                              
REMARK 500  7 ARG A 153         0.26    SIDE CHAIN                              
REMARK 500  7 ARG A 174         0.24    SIDE CHAIN                              
REMARK 500  8 ARG A 113         0.31    SIDE CHAIN                              
REMARK 500  8 ARG A 119         0.29    SIDE CHAIN                              
REMARK 500  8 ARG A 124         0.21    SIDE CHAIN                              
REMARK 500  8 ARG A 153         0.19    SIDE CHAIN                              
REMARK 500  8 ARG A 174         0.21    SIDE CHAIN                              
REMARK 500  9 ARG A 113         0.12    SIDE CHAIN                              
REMARK 500  9 ARG A 119         0.31    SIDE CHAIN                              
REMARK 500  9 ARG A 124         0.31    SIDE CHAIN                              
REMARK 500  9 ARG A 153         0.28    SIDE CHAIN                              
REMARK 500  9 ARG A 174         0.31    SIDE CHAIN                              
REMARK 500 10 ARG A 113         0.31    SIDE CHAIN                              
REMARK 500 10 ARG A 119         0.15    SIDE CHAIN                              
REMARK 500 10 ARG A 124         0.09    SIDE CHAIN                              
REMARK 500 10 ARG A 153         0.20    SIDE CHAIN                              
REMARK 500 10 ARG A 174         0.31    SIDE CHAIN                              
REMARK 500 11 ARG A 113         0.31    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      97 PLANE DEVIATIONS.                             
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A 175  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 129   SG                                                     
REMARK 620 2 CYS A 132   SG   90.3                                              
REMARK 620 3 CYS A 154   SG  113.8 101.7                                        
REMARK 620 4 CYS A 157   SG  109.1 100.6 131.0                                  
REMARK 620 N                    1     2     3                                   
REMARK 650                                                                      
REMARK 650 HELIX                                                                
REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED                              
REMARK 700                                                                      
REMARK 700 SHEET                                                                
REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED                              
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 175                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1D8J   RELATED DB: PDB                                   
REMARK 900 SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BATA (20      
REMARK 900 STRUCTURES)                                                          
REMARK 900 RELATED ID: 1D8K   RELATED DB: PDB                                   
REMARK 900 SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BATA          
REMARK 900 (AVERAGE STRUCTURE)                                                  
DBREF  1VD4 A  113   174  UNP    P29083   T2EA_HUMAN     113    174             
SEQRES   1 A   62  ARG ILE GLU THR ASP GLU ARG ASP SER THR ASN ARG ALA          
SEQRES   2 A   62  SER PHE LYS CYS PRO VAL CYS SER SER THR PHE THR ASP          
SEQRES   3 A   62  LEU GLU ALA ASN GLN LEU PHE ASP PRO MET THR GLY THR          
SEQRES   4 A   62  PHE ARG CYS THR PHE CYS HIS THR GLU VAL GLU GLU ASP          
SEQRES   5 A   62  GLU SER ALA MET PRO LYS LYS ASP ALA ARG                      
HET     ZN  A 175       1                                                       
HETNAM      ZN ZINC ION                                                         
FORMUL   2   ZN    ZN 2+                                                        
HELIX    1   1 ASP A  138  LEU A  144  1                                   7    
SHEET    1   A 3 GLU A 162  ASP A 164  0                                        
SHEET    2   A 3 SER A 126  CYS A 129 -1  O  SER A 126   N  ASP A 164           
SHEET    3   A 3 SER A 134  PHE A 136 -1  O  SER A 134   N  CYS A 129           
SHEET    1   B 3 PHE A 145  ASP A 146  0                                        
SHEET    2   B 3 THR A 151  CYS A 154 -1  O  THR A 151   N  ASP A 146           
SHEET    3   B 3 THR A 159  VAL A 161 -1  O  THR A 159   N  CYS A 154           
LINK         SG  CYS A 129                ZN    ZN A 175     1555   1555  2.46  
LINK         SG  CYS A 132                ZN    ZN A 175     1555   1555  2.79  
LINK         SG  CYS A 154                ZN    ZN A 175     1555   1555  2.02  
LINK         SG  CYS A 157                ZN    ZN A 175     1555   1555  2.11  
SITE     1 AC1  5 CYS A 129  CYS A 132  CYS A 154  CYS A 157                    
SITE     2 AC1  5 THR A 159                                                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1