data_1VD6 # _entry.id 1VD6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VD6 pdb_00001vd6 10.2210/pdb1vd6/pdb RCSB RCSB006484 ? ? WWPDB D_1000006484 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ttk003000487.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VD6 _pdbx_database_status.recvd_initial_deposition_date 2004-03-18 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ishijima, J.' 1 'Yutani, K.' 2 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 3 # _citation.id primary _citation.title 'Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase complexed with Glycerol' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ishijima, J.' 1 ? primary 'Yutani, K.' 2 ? # _cell.entry_id 1VD6 _cell.length_a 74.194 _cell.length_b 74.194 _cell.length_c 73.439 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VD6 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glycerophosphoryl Diester Phosphodiesterase' 24435.143 1 3.1.4.46 ? ? ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 317 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTAFRQRPLRLGHRGAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAVRHDPDTPLGPVFQVDYADLKAQEPDLP RLEEVLALKEAFPQAVFNVELKSFPGLGEEAARRLAALLRGREGVWVSSFDPLALLALRKAAPGLPLGFLMAEDHSALLP CLGVEAVHPHHALVTEEAVAGWRKRGLFVVAWTVNEEGEARRLLALGLDGLIGDRPEVLLPLGG ; _entity_poly.pdbx_seq_one_letter_code_can ;MTAFRQRPLRLGHRGAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAVRHDPDTPLGPVFQVDYADLKAQEPDLP RLEEVLALKEAFPQAVFNVELKSFPGLGEEAARRLAALLRGREGVWVSSFDPLALLALRKAAPGLPLGFLMAEDHSALLP CLGVEAVHPHHALVTEEAVAGWRKRGLFVVAWTVNEEGEARRLLALGLDGLIGDRPEVLLPLGG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ttk003000487.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 ALA n 1 4 PHE n 1 5 ARG n 1 6 GLN n 1 7 ARG n 1 8 PRO n 1 9 LEU n 1 10 ARG n 1 11 LEU n 1 12 GLY n 1 13 HIS n 1 14 ARG n 1 15 GLY n 1 16 ALA n 1 17 PRO n 1 18 LEU n 1 19 LYS n 1 20 ALA n 1 21 LYS n 1 22 GLU n 1 23 ASN n 1 24 THR n 1 25 LEU n 1 26 GLU n 1 27 SER n 1 28 PHE n 1 29 ARG n 1 30 LEU n 1 31 ALA n 1 32 LEU n 1 33 GLU n 1 34 ALA n 1 35 GLY n 1 36 LEU n 1 37 ASP n 1 38 GLY n 1 39 VAL n 1 40 GLU n 1 41 LEU n 1 42 ASP n 1 43 VAL n 1 44 TRP n 1 45 PRO n 1 46 THR n 1 47 ARG n 1 48 ASP n 1 49 GLY n 1 50 VAL n 1 51 PHE n 1 52 ALA n 1 53 VAL n 1 54 ARG n 1 55 HIS n 1 56 ASP n 1 57 PRO n 1 58 ASP n 1 59 THR n 1 60 PRO n 1 61 LEU n 1 62 GLY n 1 63 PRO n 1 64 VAL n 1 65 PHE n 1 66 GLN n 1 67 VAL n 1 68 ASP n 1 69 TYR n 1 70 ALA n 1 71 ASP n 1 72 LEU n 1 73 LYS n 1 74 ALA n 1 75 GLN n 1 76 GLU n 1 77 PRO n 1 78 ASP n 1 79 LEU n 1 80 PRO n 1 81 ARG n 1 82 LEU n 1 83 GLU n 1 84 GLU n 1 85 VAL n 1 86 LEU n 1 87 ALA n 1 88 LEU n 1 89 LYS n 1 90 GLU n 1 91 ALA n 1 92 PHE n 1 93 PRO n 1 94 GLN n 1 95 ALA n 1 96 VAL n 1 97 PHE n 1 98 ASN n 1 99 VAL n 1 100 GLU n 1 101 LEU n 1 102 LYS n 1 103 SER n 1 104 PHE n 1 105 PRO n 1 106 GLY n 1 107 LEU n 1 108 GLY n 1 109 GLU n 1 110 GLU n 1 111 ALA n 1 112 ALA n 1 113 ARG n 1 114 ARG n 1 115 LEU n 1 116 ALA n 1 117 ALA n 1 118 LEU n 1 119 LEU n 1 120 ARG n 1 121 GLY n 1 122 ARG n 1 123 GLU n 1 124 GLY n 1 125 VAL n 1 126 TRP n 1 127 VAL n 1 128 SER n 1 129 SER n 1 130 PHE n 1 131 ASP n 1 132 PRO n 1 133 LEU n 1 134 ALA n 1 135 LEU n 1 136 LEU n 1 137 ALA n 1 138 LEU n 1 139 ARG n 1 140 LYS n 1 141 ALA n 1 142 ALA n 1 143 PRO n 1 144 GLY n 1 145 LEU n 1 146 PRO n 1 147 LEU n 1 148 GLY n 1 149 PHE n 1 150 LEU n 1 151 MET n 1 152 ALA n 1 153 GLU n 1 154 ASP n 1 155 HIS n 1 156 SER n 1 157 ALA n 1 158 LEU n 1 159 LEU n 1 160 PRO n 1 161 CYS n 1 162 LEU n 1 163 GLY n 1 164 VAL n 1 165 GLU n 1 166 ALA n 1 167 VAL n 1 168 HIS n 1 169 PRO n 1 170 HIS n 1 171 HIS n 1 172 ALA n 1 173 LEU n 1 174 VAL n 1 175 THR n 1 176 GLU n 1 177 GLU n 1 178 ALA n 1 179 VAL n 1 180 ALA n 1 181 GLY n 1 182 TRP n 1 183 ARG n 1 184 LYS n 1 185 ARG n 1 186 GLY n 1 187 LEU n 1 188 PHE n 1 189 VAL n 1 190 VAL n 1 191 ALA n 1 192 TRP n 1 193 THR n 1 194 VAL n 1 195 ASN n 1 196 GLU n 1 197 GLU n 1 198 GLY n 1 199 GLU n 1 200 ALA n 1 201 ARG n 1 202 ARG n 1 203 LEU n 1 204 LEU n 1 205 ALA n 1 206 LEU n 1 207 GLY n 1 208 LEU n 1 209 ASP n 1 210 GLY n 1 211 LEU n 1 212 ILE n 1 213 GLY n 1 214 ASP n 1 215 ARG n 1 216 PRO n 1 217 GLU n 1 218 VAL n 1 219 LEU n 1 220 LEU n 1 221 PRO n 1 222 LEU n 1 223 GLY n 1 224 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Thermus thermophilus' _entity_src_gen.gene_src_strain HB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 300852 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code YP_145380 _struct_ref.pdbx_db_accession 55978324 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTAFRQRPLRLGHRGAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAVRHDPDTPLGPVFQVDYADLKAQEPDLP RLEEVLALKEAFPQAVFNVELKSFPGLGEEAARRLAALLRGREGVWVSSFDPLALLALRKAAPGLPLGFLMAEDHSALLP CLGVEAVHPHHALVTEEAVAGWRKRGLFVVAWTVNEEGEARRLLALGLDGLIGDRPEVLLPLGG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VD6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 224 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 55978324 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 224 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 224 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1VD6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_percent_sol 39.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method MICROBATCH _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.1 _exptl_crystal_grow.pdbx_details 'Ammonium sulfate, dioxane, pH 8.1, Microbatch, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS V' _diffrn_detector.pdbx_collection_date 2003-06-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirror _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 1VD6 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.3 _reflns.number_obs 55698 _reflns.number_all 55698 _reflns.percent_possible_obs 96.5 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19 _reflns.B_iso_Wilson_estimate 15.4 _reflns.pdbx_redundancy 10.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.3 _reflns_shell.d_res_low 1.35 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.478 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4 _reflns_shell.pdbx_redundancy 9.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 5701 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1VD6 _refine.ls_number_reflns_obs 54226 _refine.ls_number_reflns_all 57811 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1397512.59 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 31.88 _refine.ls_d_res_high 1.30 _refine.ls_percent_reflns_obs 93.8 _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_all 0.218 _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.233 _refine.ls_R_factor_R_free_error 0.003 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 5484 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 20.2 _refine.aniso_B[1][1] 2.03 _refine.aniso_B[2][2] 2.03 _refine.aniso_B[3][3] -4.06 _refine.aniso_B[1][2] 0.20 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.367356 _refine.solvent_model_param_bsol 51.19 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1V8E' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1VD6 _refine_analyze.Luzzati_coordinate_error_obs 0.17 _refine_analyze.Luzzati_sigma_a_obs 0.12 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.18 _refine_analyze.Luzzati_sigma_a_free 0.12 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1669 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 317 _refine_hist.number_atoms_total 1992 _refine_hist.d_res_high 1.30 _refine_hist.d_res_low 31.88 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.97 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.20 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.91 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.07 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.07 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.30 _refine_ls_shell.d_res_low 1.38 _refine_ls_shell.number_reflns_R_work 7869 _refine_ls_shell.R_factor_R_work 0.272 _refine_ls_shell.percent_reflns_obs 92.1 _refine_ls_shell.R_factor_R_free 0.294 _refine_ls_shell.R_factor_R_free_error 0.010 _refine_ls_shell.percent_reflns_R_free 10.2 _refine_ls_shell.number_reflns_R_free 889 _refine_ls_shell.number_reflns_obs 8404 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM GOL.TOP 'X-RAY DIFFRACTION' 3 GOL.PARAM ? 'X-RAY DIFFRACTION' 4 CIS_PEPTIDE.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1VD6 _struct.title 'Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase complexed with Glycerol' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VD6 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Glycerophosphoryl Diester Phosphodiesterase, Glycerophosphodiester Phosphodiesterase, Thermus thermophilus, HB8, Glycerol Complex, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, HYDROLASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a dimer covalently bound by disulfide bond.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 24 ? ALA A 34 ? THR A 24 ALA A 34 1 ? 11 HELX_P HELX_P2 2 PHE A 65 ? VAL A 67 ? PHE A 65 VAL A 67 5 ? 3 HELX_P HELX_P3 3 ASP A 68 ? GLU A 76 ? ASP A 68 GLU A 76 1 ? 9 HELX_P HELX_P4 4 ARG A 81 ? ALA A 87 ? ARG A 81 ALA A 87 1 ? 7 HELX_P HELX_P5 5 LEU A 88 ? ALA A 91 ? LEU A 88 ALA A 91 5 ? 4 HELX_P HELX_P6 6 LEU A 107 ? LEU A 119 ? LEU A 107 LEU A 119 1 ? 13 HELX_P HELX_P7 7 ASP A 131 ? ALA A 142 ? ASP A 131 ALA A 142 1 ? 12 HELX_P HELX_P8 8 HIS A 155 ? LEU A 162 ? HIS A 155 LEU A 162 5 ? 8 HELX_P HELX_P9 9 HIS A 171 ? VAL A 174 ? HIS A 171 VAL A 174 5 ? 4 HELX_P HELX_P10 10 THR A 175 ? ARG A 185 ? THR A 175 ARG A 185 1 ? 11 HELX_P HELX_P11 11 GLU A 196 ? LEU A 206 ? GLU A 196 LEU A 206 1 ? 11 HELX_P HELX_P12 12 ARG A 215 ? LEU A 220 ? ARG A 215 LEU A 220 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 161 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 161 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 161 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 161 _struct_conn.ptnr2_symmetry 6_764 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.163 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TRP _struct_mon_prot_cis.label_seq_id 192 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TRP _struct_mon_prot_cis.auth_seq_id 192 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 THR _struct_mon_prot_cis.pdbx_label_seq_id_2 193 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 THR _struct_mon_prot_cis.pdbx_auth_seq_id_2 193 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -4.05 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 10 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel A 8 9 ? parallel A 9 10 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 51 ? VAL A 53 ? PHE A 51 VAL A 53 A 2 GLY A 38 ? PRO A 45 ? GLY A 38 PRO A 45 A 3 VAL A 96 ? LEU A 101 ? VAL A 96 LEU A 101 A 4 VAL A 125 ? SER A 129 ? VAL A 125 SER A 129 A 5 LEU A 147 ? MET A 151 ? LEU A 147 MET A 151 A 6 ALA A 166 ? PRO A 169 ? ALA A 166 PRO A 169 A 7 PHE A 188 ? TRP A 192 ? PHE A 188 TRP A 192 A 8 GLY A 210 ? GLY A 213 ? GLY A 210 GLY A 213 A 9 LEU A 9 ? HIS A 13 ? LEU A 9 HIS A 13 A 10 GLY A 38 ? PRO A 45 ? GLY A 38 PRO A 45 B 1 ASP A 58 ? THR A 59 ? ASP A 58 THR A 59 B 2 GLY A 62 ? PRO A 63 ? GLY A 62 PRO A 63 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 52 ? O ALA A 52 N TRP A 44 ? N TRP A 44 A 2 3 N LEU A 41 ? N LEU A 41 O GLU A 100 ? O GLU A 100 A 3 4 N VAL A 99 ? N VAL A 99 O SER A 128 ? O SER A 128 A 4 5 N VAL A 127 ? N VAL A 127 O GLY A 148 ? O GLY A 148 A 5 6 N PHE A 149 ? N PHE A 149 O HIS A 168 ? O HIS A 168 A 6 7 N VAL A 167 ? N VAL A 167 O PHE A 188 ? O PHE A 188 A 7 8 N ALA A 191 ? N ALA A 191 O ILE A 212 ? O ILE A 212 A 8 9 O LEU A 211 ? O LEU A 211 N LEU A 11 ? N LEU A 11 A 9 10 N GLY A 12 ? N GLY A 12 O GLU A 40 ? O GLU A 40 B 1 2 N THR A 59 ? N THR A 59 O GLY A 62 ? O GLY A 62 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id GOL _struct_site.pdbx_auth_seq_id 300 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE GOL A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 HIS A 13 ? HIS A 13 . ? 1_555 ? 2 AC1 9 GLU A 40 ? GLU A 40 . ? 1_555 ? 3 AC1 9 GLU A 100 ? GLU A 100 . ? 1_555 ? 4 AC1 9 PHE A 130 ? PHE A 130 . ? 1_555 ? 5 AC1 9 TRP A 192 ? TRP A 192 . ? 1_555 ? 6 AC1 9 THR A 193 ? THR A 193 . ? 1_555 ? 7 AC1 9 HOH C . ? HOH A 502 . ? 1_555 ? 8 AC1 9 HOH C . ? HOH A 659 . ? 1_555 ? 9 AC1 9 HOH C . ? HOH A 660 . ? 1_555 ? # _database_PDB_matrix.entry_id 1VD6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1VD6 _atom_sites.fract_transf_matrix[1][1] 0.013478 _atom_sites.fract_transf_matrix[1][2] 0.007782 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015563 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013617 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 ALA 3 3 ? ? ? A . n A 1 4 PHE 4 4 ? ? ? A . n A 1 5 ARG 5 5 ? ? ? A . n A 1 6 GLN 6 6 ? ? ? A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 HIS 13 13 13 HIS HIS A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 TRP 44 44 44 TRP TRP A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 GLN 66 66 66 GLN GLN A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 GLN 75 75 75 GLN GLN A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 GLN 94 94 94 GLN GLN A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 PHE 104 104 104 PHE PHE A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 TRP 126 126 126 TRP TRP A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 PHE 130 130 130 PHE PHE A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 PRO 132 132 132 PRO PRO A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 ARG 139 139 139 ARG ARG A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 PRO 143 143 143 PRO PRO A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 PRO 146 146 146 PRO PRO A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 MET 151 151 151 MET MET A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 GLU 153 153 153 GLU GLU A . n A 1 154 ASP 154 154 154 ASP ASP A . n A 1 155 HIS 155 155 155 HIS HIS A . n A 1 156 SER 156 156 156 SER SER A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 PRO 160 160 160 PRO PRO A . n A 1 161 CYS 161 161 161 CYS CYS A . n A 1 162 LEU 162 162 162 LEU LEU A . n A 1 163 GLY 163 163 163 GLY GLY A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 GLU 165 165 165 GLU GLU A . n A 1 166 ALA 166 166 166 ALA ALA A . n A 1 167 VAL 167 167 167 VAL VAL A . n A 1 168 HIS 168 168 168 HIS HIS A . n A 1 169 PRO 169 169 169 PRO PRO A . n A 1 170 HIS 170 170 170 HIS HIS A . n A 1 171 HIS 171 171 171 HIS HIS A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 THR 175 175 175 THR THR A . n A 1 176 GLU 176 176 176 GLU GLU A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 ALA 178 178 178 ALA ALA A . n A 1 179 VAL 179 179 179 VAL VAL A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 GLY 181 181 181 GLY GLY A . n A 1 182 TRP 182 182 182 TRP TRP A . n A 1 183 ARG 183 183 183 ARG ARG A . n A 1 184 LYS 184 184 184 LYS LYS A . n A 1 185 ARG 185 185 185 ARG ARG A . n A 1 186 GLY 186 186 186 GLY GLY A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 PHE 188 188 188 PHE PHE A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 VAL 190 190 190 VAL VAL A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 TRP 192 192 192 TRP TRP A . n A 1 193 THR 193 193 193 THR THR A . n A 1 194 VAL 194 194 194 VAL VAL A . n A 1 195 ASN 195 195 195 ASN ASN A . n A 1 196 GLU 196 196 196 GLU GLU A . n A 1 197 GLU 197 197 197 GLU GLU A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 GLU 199 199 199 GLU GLU A . n A 1 200 ALA 200 200 200 ALA ALA A . n A 1 201 ARG 201 201 201 ARG ARG A . n A 1 202 ARG 202 202 202 ARG ARG A . n A 1 203 LEU 203 203 203 LEU LEU A . n A 1 204 LEU 204 204 204 LEU LEU A . n A 1 205 ALA 205 205 205 ALA ALA A . n A 1 206 LEU 206 206 206 LEU LEU A . n A 1 207 GLY 207 207 207 GLY GLY A . n A 1 208 LEU 208 208 208 LEU LEU A . n A 1 209 ASP 209 209 209 ASP ASP A . n A 1 210 GLY 210 210 210 GLY GLY A . n A 1 211 LEU 211 211 211 LEU LEU A . n A 1 212 ILE 212 212 212 ILE ILE A . n A 1 213 GLY 213 213 213 GLY GLY A . n A 1 214 ASP 214 214 214 ASP ASP A . n A 1 215 ARG 215 215 215 ARG ARG A . n A 1 216 PRO 216 216 216 PRO PRO A . n A 1 217 GLU 217 217 217 GLU GLU A . n A 1 218 VAL 218 218 218 VAL VAL A . n A 1 219 LEU 219 219 219 LEU LEU A . n A 1 220 LEU 220 220 220 LEU LEU A . n A 1 221 PRO 221 221 221 PRO PRO A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 GLY 223 223 223 GLY GLY A . n A 1 224 GLY 224 224 224 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 300 300 GOL GOL A . C 3 HOH 1 501 501 HOH HOH A . C 3 HOH 2 502 502 HOH HOH A . C 3 HOH 3 503 503 HOH HOH A . C 3 HOH 4 504 504 HOH HOH A . C 3 HOH 5 505 505 HOH HOH A . C 3 HOH 6 506 506 HOH HOH A . C 3 HOH 7 507 507 HOH HOH A . C 3 HOH 8 508 508 HOH HOH A . C 3 HOH 9 509 509 HOH HOH A . C 3 HOH 10 510 510 HOH HOH A . C 3 HOH 11 511 511 HOH HOH A . C 3 HOH 12 512 512 HOH HOH A . C 3 HOH 13 513 513 HOH HOH A . C 3 HOH 14 514 514 HOH HOH A . C 3 HOH 15 515 515 HOH HOH A . C 3 HOH 16 516 516 HOH HOH A . C 3 HOH 17 517 517 HOH HOH A . C 3 HOH 18 518 518 HOH HOH A . C 3 HOH 19 519 519 HOH HOH A . C 3 HOH 20 520 520 HOH HOH A . C 3 HOH 21 521 521 HOH HOH A . C 3 HOH 22 522 522 HOH HOH A . C 3 HOH 23 523 523 HOH HOH A . C 3 HOH 24 524 524 HOH HOH A . C 3 HOH 25 525 525 HOH HOH A . C 3 HOH 26 526 526 HOH HOH A . C 3 HOH 27 527 527 HOH HOH A . C 3 HOH 28 528 528 HOH HOH A . C 3 HOH 29 529 529 HOH HOH A . C 3 HOH 30 530 530 HOH HOH A . C 3 HOH 31 531 531 HOH HOH A . C 3 HOH 32 532 532 HOH HOH A . C 3 HOH 33 533 533 HOH HOH A . C 3 HOH 34 534 534 HOH HOH A . C 3 HOH 35 535 535 HOH HOH A . C 3 HOH 36 536 536 HOH HOH A . C 3 HOH 37 537 537 HOH HOH A . C 3 HOH 38 538 538 HOH HOH A . C 3 HOH 39 539 539 HOH HOH A . C 3 HOH 40 540 540 HOH HOH A . C 3 HOH 41 541 541 HOH HOH A . C 3 HOH 42 542 542 HOH HOH A . C 3 HOH 43 543 543 HOH HOH A . C 3 HOH 44 544 544 HOH HOH A . C 3 HOH 45 545 545 HOH HOH A . C 3 HOH 46 546 546 HOH HOH A . C 3 HOH 47 547 547 HOH HOH A . C 3 HOH 48 548 548 HOH HOH A . C 3 HOH 49 549 549 HOH HOH A . C 3 HOH 50 550 550 HOH HOH A . C 3 HOH 51 551 551 HOH HOH A . C 3 HOH 52 552 552 HOH HOH A . C 3 HOH 53 553 553 HOH HOH A . C 3 HOH 54 554 554 HOH HOH A . C 3 HOH 55 555 555 HOH HOH A . C 3 HOH 56 556 556 HOH HOH A . C 3 HOH 57 557 557 HOH HOH A . C 3 HOH 58 558 558 HOH HOH A . C 3 HOH 59 559 559 HOH HOH A . C 3 HOH 60 560 560 HOH HOH A . C 3 HOH 61 561 561 HOH HOH A . C 3 HOH 62 562 562 HOH HOH A . C 3 HOH 63 563 563 HOH HOH A . C 3 HOH 64 564 564 HOH HOH A . C 3 HOH 65 565 565 HOH HOH A . C 3 HOH 66 566 566 HOH HOH A . C 3 HOH 67 567 567 HOH HOH A . C 3 HOH 68 568 568 HOH HOH A . C 3 HOH 69 569 569 HOH HOH A . C 3 HOH 70 570 570 HOH HOH A . C 3 HOH 71 571 571 HOH HOH A . C 3 HOH 72 572 572 HOH HOH A . C 3 HOH 73 573 573 HOH HOH A . C 3 HOH 74 574 574 HOH HOH A . C 3 HOH 75 575 575 HOH HOH A . C 3 HOH 76 576 576 HOH HOH A . C 3 HOH 77 577 577 HOH HOH A . C 3 HOH 78 578 578 HOH HOH A . C 3 HOH 79 579 579 HOH HOH A . C 3 HOH 80 580 580 HOH HOH A . C 3 HOH 81 581 581 HOH HOH A . C 3 HOH 82 582 582 HOH HOH A . C 3 HOH 83 583 583 HOH HOH A . C 3 HOH 84 584 584 HOH HOH A . C 3 HOH 85 585 585 HOH HOH A . C 3 HOH 86 586 586 HOH HOH A . C 3 HOH 87 587 587 HOH HOH A . C 3 HOH 88 588 588 HOH HOH A . C 3 HOH 89 589 589 HOH HOH A . C 3 HOH 90 590 590 HOH HOH A . C 3 HOH 91 591 591 HOH HOH A . C 3 HOH 92 592 592 HOH HOH A . C 3 HOH 93 593 593 HOH HOH A . C 3 HOH 94 594 594 HOH HOH A . C 3 HOH 95 595 595 HOH HOH A . C 3 HOH 96 596 596 HOH HOH A . C 3 HOH 97 597 597 HOH HOH A . C 3 HOH 98 598 598 HOH HOH A . C 3 HOH 99 599 599 HOH HOH A . C 3 HOH 100 600 600 HOH HOH A . C 3 HOH 101 601 601 HOH HOH A . C 3 HOH 102 602 602 HOH HOH A . C 3 HOH 103 603 603 HOH HOH A . C 3 HOH 104 604 604 HOH HOH A . C 3 HOH 105 605 605 HOH HOH A . C 3 HOH 106 606 606 HOH HOH A . C 3 HOH 107 607 607 HOH HOH A . C 3 HOH 108 608 608 HOH HOH A . C 3 HOH 109 609 609 HOH HOH A . C 3 HOH 110 610 610 HOH HOH A . C 3 HOH 111 611 611 HOH HOH A . C 3 HOH 112 612 612 HOH HOH A . C 3 HOH 113 613 613 HOH HOH A . C 3 HOH 114 614 614 HOH HOH A . C 3 HOH 115 615 615 HOH HOH A . C 3 HOH 116 616 616 HOH HOH A . C 3 HOH 117 617 617 HOH HOH A . C 3 HOH 118 618 618 HOH HOH A . C 3 HOH 119 619 619 HOH HOH A . C 3 HOH 120 620 620 HOH HOH A . C 3 HOH 121 621 621 HOH HOH A . C 3 HOH 122 622 622 HOH HOH A . C 3 HOH 123 623 623 HOH HOH A . C 3 HOH 124 624 624 HOH HOH A . C 3 HOH 125 625 625 HOH HOH A . C 3 HOH 126 626 626 HOH HOH A . C 3 HOH 127 627 627 HOH HOH A . C 3 HOH 128 628 628 HOH HOH A . C 3 HOH 129 629 629 HOH HOH A . C 3 HOH 130 630 630 HOH HOH A . C 3 HOH 131 631 631 HOH HOH A . C 3 HOH 132 632 632 HOH HOH A . C 3 HOH 133 633 633 HOH HOH A . C 3 HOH 134 634 634 HOH HOH A . C 3 HOH 135 635 635 HOH HOH A . C 3 HOH 136 636 636 HOH HOH A . C 3 HOH 137 637 637 HOH HOH A . C 3 HOH 138 638 638 HOH HOH A . C 3 HOH 139 639 639 HOH HOH A . C 3 HOH 140 640 640 HOH HOH A . C 3 HOH 141 641 641 HOH HOH A . C 3 HOH 142 642 642 HOH HOH A . C 3 HOH 143 643 643 HOH HOH A . C 3 HOH 144 644 644 HOH HOH A . C 3 HOH 145 645 645 HOH HOH A . C 3 HOH 146 646 646 HOH HOH A . C 3 HOH 147 647 647 HOH HOH A . C 3 HOH 148 648 648 HOH HOH A . C 3 HOH 149 649 649 HOH HOH A . C 3 HOH 150 650 650 HOH HOH A . C 3 HOH 151 651 651 HOH HOH A . C 3 HOH 152 652 652 HOH HOH A . C 3 HOH 153 653 653 HOH HOH A . C 3 HOH 154 654 654 HOH HOH A . C 3 HOH 155 655 655 HOH HOH A . C 3 HOH 156 656 656 HOH HOH A . C 3 HOH 157 657 657 HOH HOH A . C 3 HOH 158 658 658 HOH HOH A . C 3 HOH 159 659 659 HOH HOH A . C 3 HOH 160 660 660 HOH HOH A . C 3 HOH 161 661 661 HOH HOH A . C 3 HOH 162 662 662 HOH HOH A . C 3 HOH 163 663 663 HOH HOH A . C 3 HOH 164 664 664 HOH HOH A . C 3 HOH 165 665 665 HOH HOH A . C 3 HOH 166 666 666 HOH HOH A . C 3 HOH 167 667 667 HOH HOH A . C 3 HOH 168 668 668 HOH HOH A . C 3 HOH 169 669 669 HOH HOH A . C 3 HOH 170 670 670 HOH HOH A . C 3 HOH 171 671 671 HOH HOH A . C 3 HOH 172 672 672 HOH HOH A . C 3 HOH 173 673 673 HOH HOH A . C 3 HOH 174 674 674 HOH HOH A . C 3 HOH 175 675 675 HOH HOH A . C 3 HOH 176 676 676 HOH HOH A . C 3 HOH 177 677 677 HOH HOH A . C 3 HOH 178 678 678 HOH HOH A . C 3 HOH 179 679 679 HOH HOH A . C 3 HOH 180 680 680 HOH HOH A . C 3 HOH 181 681 681 HOH HOH A . C 3 HOH 182 682 682 HOH HOH A . C 3 HOH 183 683 683 HOH HOH A . C 3 HOH 184 684 684 HOH HOH A . C 3 HOH 185 685 685 HOH HOH A . C 3 HOH 186 686 686 HOH HOH A . C 3 HOH 187 687 687 HOH HOH A . C 3 HOH 188 688 688 HOH HOH A . C 3 HOH 189 689 689 HOH HOH A . C 3 HOH 190 690 690 HOH HOH A . C 3 HOH 191 691 691 HOH HOH A . C 3 HOH 192 692 692 HOH HOH A . C 3 HOH 193 693 693 HOH HOH A . C 3 HOH 194 694 694 HOH HOH A . C 3 HOH 195 695 695 HOH HOH A . C 3 HOH 196 696 696 HOH HOH A . C 3 HOH 197 697 697 HOH HOH A . C 3 HOH 198 698 698 HOH HOH A . C 3 HOH 199 699 699 HOH HOH A . C 3 HOH 200 700 700 HOH HOH A . C 3 HOH 201 701 701 HOH HOH A . C 3 HOH 202 702 702 HOH HOH A . C 3 HOH 203 703 703 HOH HOH A . C 3 HOH 204 704 704 HOH HOH A . C 3 HOH 205 705 705 HOH HOH A . C 3 HOH 206 706 706 HOH HOH A . C 3 HOH 207 707 707 HOH HOH A . C 3 HOH 208 708 708 HOH HOH A . C 3 HOH 209 709 709 HOH HOH A . C 3 HOH 210 710 710 HOH HOH A . C 3 HOH 211 711 711 HOH HOH A . C 3 HOH 212 712 712 HOH HOH A . C 3 HOH 213 713 713 HOH HOH A . C 3 HOH 214 714 714 HOH HOH A . C 3 HOH 215 715 715 HOH HOH A . C 3 HOH 216 716 716 HOH HOH A . C 3 HOH 217 717 717 HOH HOH A . C 3 HOH 218 718 718 HOH HOH A . C 3 HOH 219 719 719 HOH HOH A . C 3 HOH 220 720 720 HOH HOH A . C 3 HOH 221 721 721 HOH HOH A . C 3 HOH 222 722 722 HOH HOH A . C 3 HOH 223 723 723 HOH HOH A . C 3 HOH 224 724 724 HOH HOH A . C 3 HOH 225 725 725 HOH HOH A . C 3 HOH 226 726 726 HOH HOH A . C 3 HOH 227 727 727 HOH HOH A . C 3 HOH 228 728 728 HOH HOH A . C 3 HOH 229 729 729 HOH HOH A . C 3 HOH 230 730 730 HOH HOH A . C 3 HOH 231 731 731 HOH HOH A . C 3 HOH 232 732 732 HOH HOH A . C 3 HOH 233 733 733 HOH HOH A . C 3 HOH 234 734 734 HOH HOH A . C 3 HOH 235 735 735 HOH HOH A . C 3 HOH 236 736 736 HOH HOH A . C 3 HOH 237 737 737 HOH HOH A . C 3 HOH 238 738 738 HOH HOH A . C 3 HOH 239 739 739 HOH HOH A . C 3 HOH 240 740 740 HOH HOH A . C 3 HOH 241 741 741 HOH HOH A . C 3 HOH 242 742 742 HOH HOH A . C 3 HOH 243 743 743 HOH HOH A . C 3 HOH 244 744 744 HOH HOH A . C 3 HOH 245 745 745 HOH HOH A . C 3 HOH 246 746 746 HOH HOH A . C 3 HOH 247 747 747 HOH HOH A . C 3 HOH 248 748 748 HOH HOH A . C 3 HOH 249 749 749 HOH HOH A . C 3 HOH 250 750 750 HOH HOH A . C 3 HOH 251 751 751 HOH HOH A . C 3 HOH 252 752 752 HOH HOH A . C 3 HOH 253 753 753 HOH HOH A . C 3 HOH 254 754 754 HOH HOH A . C 3 HOH 255 755 755 HOH HOH A . C 3 HOH 256 756 756 HOH HOH A . C 3 HOH 257 757 757 HOH HOH A . C 3 HOH 258 758 758 HOH HOH A . C 3 HOH 259 759 759 HOH HOH A . C 3 HOH 260 760 760 HOH HOH A . C 3 HOH 261 761 761 HOH HOH A . C 3 HOH 262 762 762 HOH HOH A . C 3 HOH 263 763 763 HOH HOH A . C 3 HOH 264 764 764 HOH HOH A . C 3 HOH 265 765 765 HOH HOH A . C 3 HOH 266 766 766 HOH HOH A . C 3 HOH 267 767 767 HOH HOH A . C 3 HOH 268 768 768 HOH HOH A . C 3 HOH 269 769 769 HOH HOH A . C 3 HOH 270 770 770 HOH HOH A . C 3 HOH 271 771 771 HOH HOH A . C 3 HOH 272 772 772 HOH HOH A . C 3 HOH 273 773 773 HOH HOH A . C 3 HOH 274 774 774 HOH HOH A . C 3 HOH 275 775 775 HOH HOH A . C 3 HOH 276 776 776 HOH HOH A . C 3 HOH 277 777 777 HOH HOH A . C 3 HOH 278 778 778 HOH HOH A . C 3 HOH 279 779 779 HOH HOH A . C 3 HOH 280 780 780 HOH HOH A . C 3 HOH 281 781 781 HOH HOH A . C 3 HOH 282 782 782 HOH HOH A . C 3 HOH 283 783 783 HOH HOH A . C 3 HOH 284 784 784 HOH HOH A . C 3 HOH 285 785 785 HOH HOH A . C 3 HOH 286 786 786 HOH HOH A . C 3 HOH 287 787 787 HOH HOH A . C 3 HOH 288 788 788 HOH HOH A . C 3 HOH 289 789 789 HOH HOH A . C 3 HOH 290 790 790 HOH HOH A . C 3 HOH 291 791 791 HOH HOH A . C 3 HOH 292 792 792 HOH HOH A . C 3 HOH 293 793 793 HOH HOH A . C 3 HOH 294 794 794 HOH HOH A . C 3 HOH 295 795 795 HOH HOH A . C 3 HOH 296 796 796 HOH HOH A . C 3 HOH 297 797 797 HOH HOH A . C 3 HOH 298 798 798 HOH HOH A . C 3 HOH 299 799 799 HOH HOH A . C 3 HOH 300 800 800 HOH HOH A . C 3 HOH 301 801 801 HOH HOH A . C 3 HOH 302 802 802 HOH HOH A . C 3 HOH 303 803 803 HOH HOH A . C 3 HOH 304 804 804 HOH HOH A . C 3 HOH 305 805 805 HOH HOH A . C 3 HOH 306 806 806 HOH HOH A . C 3 HOH 307 807 807 HOH HOH A . C 3 HOH 308 808 808 HOH HOH A . C 3 HOH 309 809 809 HOH HOH A . C 3 HOH 310 810 810 HOH HOH A . C 3 HOH 311 811 811 HOH HOH A . C 3 HOH 312 812 812 HOH HOH A . C 3 HOH 313 813 813 HOH HOH A . C 3 HOH 314 814 814 HOH HOH A . C 3 HOH 315 815 815 HOH HOH A . C 3 HOH 316 816 816 HOH HOH A . C 3 HOH 317 820 820 HOH TIP A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1870 ? 1 MORE -17 ? 1 'SSA (A^2)' 18190 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_764 -x+2,-x+y+1,-z-1/3 -0.5000000000 -0.8660254038 0.0000000000 111.2910000000 -0.8660254038 0.5000000000 0.0000000000 64.2538888084 0.0000000000 0.0000000000 -1.0000000000 -24.4796666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-04-05 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing 1.1 ? 4 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PRO _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 105 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id A _pdbx_validate_torsion.phi -32.35 _pdbx_validate_torsion.psi 130.58 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 120 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.087 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 7 ? CG ? A ARG 7 CG 2 1 Y 1 A ARG 7 ? CD ? A ARG 7 CD 3 1 Y 1 A ARG 7 ? NE ? A ARG 7 NE 4 1 Y 1 A ARG 7 ? CZ ? A ARG 7 CZ 5 1 Y 1 A ARG 7 ? NH1 ? A ARG 7 NH1 6 1 Y 1 A ARG 7 ? NH2 ? A ARG 7 NH2 7 1 N 0 A HOH 820 ? O A C HOH ? O # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A ALA 3 ? A ALA 3 4 1 Y 1 A PHE 4 ? A PHE 4 5 1 Y 1 A ARG 5 ? A ARG 5 6 1 Y 1 A GLN 6 ? A GLN 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 SER N N N N 304 SER CA C N S 305 SER C C N N 306 SER O O N N 307 SER CB C N N 308 SER OG O N N 309 SER OXT O N N 310 SER H H N N 311 SER H2 H N N 312 SER HA H N N 313 SER HB2 H N N 314 SER HB3 H N N 315 SER HG H N N 316 SER HXT H N N 317 THR N N N N 318 THR CA C N S 319 THR C C N N 320 THR O O N N 321 THR CB C N R 322 THR OG1 O N N 323 THR CG2 C N N 324 THR OXT O N N 325 THR H H N N 326 THR H2 H N N 327 THR HA H N N 328 THR HB H N N 329 THR HG1 H N N 330 THR HG21 H N N 331 THR HG22 H N N 332 THR HG23 H N N 333 THR HXT H N N 334 TRP N N N N 335 TRP CA C N S 336 TRP C C N N 337 TRP O O N N 338 TRP CB C N N 339 TRP CG C Y N 340 TRP CD1 C Y N 341 TRP CD2 C Y N 342 TRP NE1 N Y N 343 TRP CE2 C Y N 344 TRP CE3 C Y N 345 TRP CZ2 C Y N 346 TRP CZ3 C Y N 347 TRP CH2 C Y N 348 TRP OXT O N N 349 TRP H H N N 350 TRP H2 H N N 351 TRP HA H N N 352 TRP HB2 H N N 353 TRP HB3 H N N 354 TRP HD1 H N N 355 TRP HE1 H N N 356 TRP HE3 H N N 357 TRP HZ2 H N N 358 TRP HZ3 H N N 359 TRP HH2 H N N 360 TRP HXT H N N 361 TYR N N N N 362 TYR CA C N S 363 TYR C C N N 364 TYR O O N N 365 TYR CB C N N 366 TYR CG C Y N 367 TYR CD1 C Y N 368 TYR CD2 C Y N 369 TYR CE1 C Y N 370 TYR CE2 C Y N 371 TYR CZ C Y N 372 TYR OH O N N 373 TYR OXT O N N 374 TYR H H N N 375 TYR H2 H N N 376 TYR HA H N N 377 TYR HB2 H N N 378 TYR HB3 H N N 379 TYR HD1 H N N 380 TYR HD2 H N N 381 TYR HE1 H N N 382 TYR HE2 H N N 383 TYR HH H N N 384 TYR HXT H N N 385 VAL N N N N 386 VAL CA C N S 387 VAL C C N N 388 VAL O O N N 389 VAL CB C N N 390 VAL CG1 C N N 391 VAL CG2 C N N 392 VAL OXT O N N 393 VAL H H N N 394 VAL H2 H N N 395 VAL HA H N N 396 VAL HB H N N 397 VAL HG11 H N N 398 VAL HG12 H N N 399 VAL HG13 H N N 400 VAL HG21 H N N 401 VAL HG22 H N N 402 VAL HG23 H N N 403 VAL HXT H N N 404 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TRP N CA sing N N 319 TRP N H sing N N 320 TRP N H2 sing N N 321 TRP CA C sing N N 322 TRP CA CB sing N N 323 TRP CA HA sing N N 324 TRP C O doub N N 325 TRP C OXT sing N N 326 TRP CB CG sing N N 327 TRP CB HB2 sing N N 328 TRP CB HB3 sing N N 329 TRP CG CD1 doub Y N 330 TRP CG CD2 sing Y N 331 TRP CD1 NE1 sing Y N 332 TRP CD1 HD1 sing N N 333 TRP CD2 CE2 doub Y N 334 TRP CD2 CE3 sing Y N 335 TRP NE1 CE2 sing Y N 336 TRP NE1 HE1 sing N N 337 TRP CE2 CZ2 sing Y N 338 TRP CE3 CZ3 doub Y N 339 TRP CE3 HE3 sing N N 340 TRP CZ2 CH2 doub Y N 341 TRP CZ2 HZ2 sing N N 342 TRP CZ3 CH2 sing Y N 343 TRP CZ3 HZ3 sing N N 344 TRP CH2 HH2 sing N N 345 TRP OXT HXT sing N N 346 TYR N CA sing N N 347 TYR N H sing N N 348 TYR N H2 sing N N 349 TYR CA C sing N N 350 TYR CA CB sing N N 351 TYR CA HA sing N N 352 TYR C O doub N N 353 TYR C OXT sing N N 354 TYR CB CG sing N N 355 TYR CB HB2 sing N N 356 TYR CB HB3 sing N N 357 TYR CG CD1 doub Y N 358 TYR CG CD2 sing Y N 359 TYR CD1 CE1 sing Y N 360 TYR CD1 HD1 sing N N 361 TYR CD2 CE2 doub Y N 362 TYR CD2 HD2 sing N N 363 TYR CE1 CZ doub Y N 364 TYR CE1 HE1 sing N N 365 TYR CE2 CZ sing Y N 366 TYR CE2 HE2 sing N N 367 TYR CZ OH sing N N 368 TYR OH HH sing N N 369 TYR OXT HXT sing N N 370 VAL N CA sing N N 371 VAL N H sing N N 372 VAL N H2 sing N N 373 VAL CA C sing N N 374 VAL CA CB sing N N 375 VAL CA HA sing N N 376 VAL C O doub N N 377 VAL C OXT sing N N 378 VAL CB CG1 sing N N 379 VAL CB CG2 sing N N 380 VAL CB HB sing N N 381 VAL CG1 HG11 sing N N 382 VAL CG1 HG12 sing N N 383 VAL CG1 HG13 sing N N 384 VAL CG2 HG21 sing N N 385 VAL CG2 HG22 sing N N 386 VAL CG2 HG23 sing N N 387 VAL OXT HXT sing N N 388 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1V8E _pdbx_initial_refinement_model.details 'PDB ENTRY 1V8E' #