data_1VD9 # _entry.id 1VD9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VD9 pdb_00001vd9 10.2210/pdb1vd9/pdb RCSB RCSB006487 ? ? WWPDB D_1000006487 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-03-29 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VD9 _pdbx_database_status.recvd_initial_deposition_date 2004-03-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1VD7 'Solution structure of FMBP-1 tandem repeat 1' unspecified PDB 1VD8 'Solution structure of FMBP-1 tandem repeat 2' unspecified PDB 1VDA 'Solution structure of FMBP-1 tandem repeat 4' unspecified PDB 1VDB 'NMR structure of FMBP-1 tandem repeat 1 in 30%(v/v) TFE solution' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kawaguchi, K.' 1 'Yamaki, T.' 2 'Aizawa, T.' 3 'Takiya, S.' 4 'Demura, M.' 5 'Nitta, K.' 6 # _citation.id primary _citation.title 'Solution structure of FMBP-1 tandem repeat 3' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kawaguchi, K.' 1 ? primary 'Yamaki, T.' 2 ? primary 'Aizawa, T.' 3 ? primary 'Takiya, S.' 4 ? primary 'Demura, M.' 5 ? primary 'Nitta, K.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description Fibroin-modulator-binding-protein-1 _entity.formula_weight 2710.129 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name FMBP-1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ETREQRAIRLARMSAYAARRLAN _entity_poly.pdbx_seq_one_letter_code_can ETREQRAIRLARMSAYAARRLAN _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 THR n 1 3 ARG n 1 4 GLU n 1 5 GLN n 1 6 ARG n 1 7 ALA n 1 8 ILE n 1 9 ARG n 1 10 LEU n 1 11 ALA n 1 12 ARG n 1 13 MET n 1 14 SER n 1 15 ALA n 1 16 TYR n 1 17 ALA n 1 18 ALA n 1 19 ARG n 1 20 ARG n 1 21 LEU n 1 22 ALA n 1 23 ASN n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'synthetic construct' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 1 GLU GLU A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 MET 13 13 13 MET MET A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 ASN 23 23 23 ASN ASN A . n # _exptl.entry_id 1VD9 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1VD9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VD9 _struct.title 'Solution structure of FMBP-1 tandem repeat 3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VD9 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'TANDEM REPEAT, N-CAP, DNA BINDING, TRANSCRIPTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1VD9 _struct_ref.pdbx_db_accession 1VD9 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VD9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 23 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1VD9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 23 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 23 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 2 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ARG _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 12 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 2 _struct_conf.end_auth_comp_id ARG _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 12 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 12 ? ? -104.57 48.87 2 1 MET A 13 ? ? -148.16 -65.99 3 1 TYR A 16 ? ? -174.29 -155.25 4 1 ALA A 17 ? ? 70.83 65.59 5 1 ARG A 20 ? ? 60.34 86.53 6 1 LEU A 21 ? ? -156.57 33.46 7 2 MET A 13 ? ? -126.97 -59.56 8 2 SER A 14 ? ? -107.55 -164.24 9 2 TYR A 16 ? ? -171.28 -159.92 10 2 ALA A 17 ? ? 63.03 -81.00 11 2 ALA A 18 ? ? -165.13 31.56 12 2 ARG A 19 ? ? -109.89 57.20 13 2 ARG A 20 ? ? 58.36 106.03 14 3 SER A 14 ? ? -107.62 -165.25 15 3 TYR A 16 ? ? -177.59 -159.15 16 3 ALA A 17 ? ? 65.68 177.54 17 3 ALA A 18 ? ? 64.05 -79.60 18 3 ARG A 19 ? ? -161.88 37.04 19 3 ALA A 22 ? ? -150.64 -69.35 20 4 ARG A 12 ? ? -97.88 31.59 21 4 TYR A 16 ? ? 179.40 -159.75 22 4 ALA A 17 ? ? 61.02 62.17 23 4 LEU A 21 ? ? 59.35 161.85 24 4 ALA A 22 ? ? 61.73 176.71 25 5 MET A 13 ? ? -94.12 45.80 26 5 SER A 14 ? ? -104.24 -161.76 27 5 TYR A 16 ? ? -176.12 -159.55 28 5 ALA A 17 ? ? 64.58 84.20 29 5 ALA A 22 ? ? -156.93 38.03 30 6 ARG A 12 ? ? -91.05 48.83 31 6 SER A 14 ? ? 55.44 -163.60 32 6 ALA A 15 ? ? 60.50 -162.18 33 6 ALA A 17 ? ? -168.24 -42.97 34 6 ALA A 18 ? ? -146.10 -61.86 35 6 LEU A 21 ? ? 59.95 175.13 36 6 ALA A 22 ? ? 60.40 72.91 37 7 ARG A 12 ? ? -97.59 38.27 38 7 MET A 13 ? ? -158.99 -45.29 39 7 SER A 14 ? ? -71.88 -161.28 40 7 ALA A 15 ? ? 59.85 -161.14 41 7 ALA A 17 ? ? -175.41 70.72 42 7 ALA A 18 ? ? 58.84 86.02 43 7 ARG A 19 ? ? -172.77 -71.56 44 7 ARG A 20 ? ? -152.93 71.11 45 7 ALA A 22 ? ? -59.84 -76.15 46 8 MET A 13 ? ? -63.62 82.08 47 8 SER A 14 ? ? -73.41 -163.41 48 8 TYR A 16 ? ? -171.65 -158.21 49 8 ALA A 17 ? ? 70.57 -168.01 50 8 ALA A 18 ? ? -97.61 30.15 51 8 ARG A 20 ? ? -162.71 87.27 52 8 ALA A 22 ? ? 59.14 91.57 53 9 ARG A 12 ? ? -110.64 67.44 54 9 TYR A 16 ? ? -179.32 -160.09 55 9 ALA A 17 ? ? 64.38 -174.69 56 9 ALA A 22 ? ? 59.96 75.23 57 10 SER A 14 ? ? -103.54 -162.56 58 10 ALA A 15 ? ? 56.90 -161.57 59 10 ALA A 17 ? ? -171.48 118.43 60 11 MET A 13 ? ? -142.64 53.67 61 11 TYR A 16 ? ? -172.37 -157.35 62 12 ARG A 12 ? ? -97.04 38.81 63 12 ALA A 15 ? ? 60.55 -160.99 64 12 ALA A 17 ? ? -174.33 36.15 65 12 ARG A 19 ? ? -146.94 -73.02 66 13 ARG A 12 ? ? -119.82 72.79 67 13 MET A 13 ? ? -137.92 -66.05 68 13 SER A 14 ? ? -79.70 -164.36 69 13 ALA A 15 ? ? 58.67 -163.32 70 13 ALA A 17 ? ? -172.69 103.30 71 13 ALA A 18 ? ? -152.07 -70.07 72 13 ARG A 20 ? ? -150.01 85.87 73 13 LEU A 21 ? ? -175.95 107.93 74 13 ALA A 22 ? ? -144.87 32.91 75 14 SER A 14 ? ? 54.28 -158.10 76 14 TYR A 16 ? ? -167.19 -160.18 77 14 ALA A 17 ? ? 68.45 163.82 78 14 ALA A 18 ? ? -59.27 92.33 79 14 ARG A 19 ? ? -169.38 -51.91 80 14 LEU A 21 ? ? -151.91 31.45 81 15 SER A 14 ? ? -102.12 -160.23 82 15 ALA A 15 ? ? 64.59 -162.79 83 15 ALA A 17 ? ? -176.08 36.65 84 15 ALA A 18 ? ? -177.81 -163.98 85 15 LEU A 21 ? ? -158.86 -48.57 # _pdbx_nmr_ensemble.entry_id 1VD9 _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 15 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1VD9 _pdbx_nmr_representative.conformer_id 8 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.5mM peptide; pH 4 (10mM sodium phosphate buffer, 60mM NaCl); 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 4 _pdbx_nmr_exptl_sample_conditions.ionic_strength 60mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 DQF-COSY 2 1 1 '2D TOCSY' 3 1 1 '2D NOESY' # _pdbx_nmr_details.entry_id 1VD9 _pdbx_nmr_details.text 'This structure was determined using standard 2D homonuclear techniques.' # _pdbx_nmr_refine.entry_id 1VD9 _pdbx_nmr_refine.method 'distance geometry simulated annealing' _pdbx_nmr_refine.details ;The structures are based on a total of 184 restraints, 182 are NOE-derived distance constraints and 2 are dihedral angle restraints. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_software.name CNS _pdbx_nmr_software.version 1.1 _pdbx_nmr_software.classification refinement _pdbx_nmr_software.authors ? _pdbx_nmr_software.ordinal 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 GLN N N N N 58 GLN CA C N S 59 GLN C C N N 60 GLN O O N N 61 GLN CB C N N 62 GLN CG C N N 63 GLN CD C N N 64 GLN OE1 O N N 65 GLN NE2 N N N 66 GLN OXT O N N 67 GLN H H N N 68 GLN H2 H N N 69 GLN HA H N N 70 GLN HB2 H N N 71 GLN HB3 H N N 72 GLN HG2 H N N 73 GLN HG3 H N N 74 GLN HE21 H N N 75 GLN HE22 H N N 76 GLN HXT H N N 77 GLU N N N N 78 GLU CA C N S 79 GLU C C N N 80 GLU O O N N 81 GLU CB C N N 82 GLU CG C N N 83 GLU CD C N N 84 GLU OE1 O N N 85 GLU OE2 O N N 86 GLU OXT O N N 87 GLU H H N N 88 GLU H2 H N N 89 GLU HA H N N 90 GLU HB2 H N N 91 GLU HB3 H N N 92 GLU HG2 H N N 93 GLU HG3 H N N 94 GLU HE2 H N N 95 GLU HXT H N N 96 ILE N N N N 97 ILE CA C N S 98 ILE C C N N 99 ILE O O N N 100 ILE CB C N S 101 ILE CG1 C N N 102 ILE CG2 C N N 103 ILE CD1 C N N 104 ILE OXT O N N 105 ILE H H N N 106 ILE H2 H N N 107 ILE HA H N N 108 ILE HB H N N 109 ILE HG12 H N N 110 ILE HG13 H N N 111 ILE HG21 H N N 112 ILE HG22 H N N 113 ILE HG23 H N N 114 ILE HD11 H N N 115 ILE HD12 H N N 116 ILE HD13 H N N 117 ILE HXT H N N 118 LEU N N N N 119 LEU CA C N S 120 LEU C C N N 121 LEU O O N N 122 LEU CB C N N 123 LEU CG C N N 124 LEU CD1 C N N 125 LEU CD2 C N N 126 LEU OXT O N N 127 LEU H H N N 128 LEU H2 H N N 129 LEU HA H N N 130 LEU HB2 H N N 131 LEU HB3 H N N 132 LEU HG H N N 133 LEU HD11 H N N 134 LEU HD12 H N N 135 LEU HD13 H N N 136 LEU HD21 H N N 137 LEU HD22 H N N 138 LEU HD23 H N N 139 LEU HXT H N N 140 MET N N N N 141 MET CA C N S 142 MET C C N N 143 MET O O N N 144 MET CB C N N 145 MET CG C N N 146 MET SD S N N 147 MET CE C N N 148 MET OXT O N N 149 MET H H N N 150 MET H2 H N N 151 MET HA H N N 152 MET HB2 H N N 153 MET HB3 H N N 154 MET HG2 H N N 155 MET HG3 H N N 156 MET HE1 H N N 157 MET HE2 H N N 158 MET HE3 H N N 159 MET HXT H N N 160 SER N N N N 161 SER CA C N S 162 SER C C N N 163 SER O O N N 164 SER CB C N N 165 SER OG O N N 166 SER OXT O N N 167 SER H H N N 168 SER H2 H N N 169 SER HA H N N 170 SER HB2 H N N 171 SER HB3 H N N 172 SER HG H N N 173 SER HXT H N N 174 THR N N N N 175 THR CA C N S 176 THR C C N N 177 THR O O N N 178 THR CB C N R 179 THR OG1 O N N 180 THR CG2 C N N 181 THR OXT O N N 182 THR H H N N 183 THR H2 H N N 184 THR HA H N N 185 THR HB H N N 186 THR HG1 H N N 187 THR HG21 H N N 188 THR HG22 H N N 189 THR HG23 H N N 190 THR HXT H N N 191 TYR N N N N 192 TYR CA C N S 193 TYR C C N N 194 TYR O O N N 195 TYR CB C N N 196 TYR CG C Y N 197 TYR CD1 C Y N 198 TYR CD2 C Y N 199 TYR CE1 C Y N 200 TYR CE2 C Y N 201 TYR CZ C Y N 202 TYR OH O N N 203 TYR OXT O N N 204 TYR H H N N 205 TYR H2 H N N 206 TYR HA H N N 207 TYR HB2 H N N 208 TYR HB3 H N N 209 TYR HD1 H N N 210 TYR HD2 H N N 211 TYR HE1 H N N 212 TYR HE2 H N N 213 TYR HH H N N 214 TYR HXT H N N 215 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 GLN N CA sing N N 55 GLN N H sing N N 56 GLN N H2 sing N N 57 GLN CA C sing N N 58 GLN CA CB sing N N 59 GLN CA HA sing N N 60 GLN C O doub N N 61 GLN C OXT sing N N 62 GLN CB CG sing N N 63 GLN CB HB2 sing N N 64 GLN CB HB3 sing N N 65 GLN CG CD sing N N 66 GLN CG HG2 sing N N 67 GLN CG HG3 sing N N 68 GLN CD OE1 doub N N 69 GLN CD NE2 sing N N 70 GLN NE2 HE21 sing N N 71 GLN NE2 HE22 sing N N 72 GLN OXT HXT sing N N 73 GLU N CA sing N N 74 GLU N H sing N N 75 GLU N H2 sing N N 76 GLU CA C sing N N 77 GLU CA CB sing N N 78 GLU CA HA sing N N 79 GLU C O doub N N 80 GLU C OXT sing N N 81 GLU CB CG sing N N 82 GLU CB HB2 sing N N 83 GLU CB HB3 sing N N 84 GLU CG CD sing N N 85 GLU CG HG2 sing N N 86 GLU CG HG3 sing N N 87 GLU CD OE1 doub N N 88 GLU CD OE2 sing N N 89 GLU OE2 HE2 sing N N 90 GLU OXT HXT sing N N 91 ILE N CA sing N N 92 ILE N H sing N N 93 ILE N H2 sing N N 94 ILE CA C sing N N 95 ILE CA CB sing N N 96 ILE CA HA sing N N 97 ILE C O doub N N 98 ILE C OXT sing N N 99 ILE CB CG1 sing N N 100 ILE CB CG2 sing N N 101 ILE CB HB sing N N 102 ILE CG1 CD1 sing N N 103 ILE CG1 HG12 sing N N 104 ILE CG1 HG13 sing N N 105 ILE CG2 HG21 sing N N 106 ILE CG2 HG22 sing N N 107 ILE CG2 HG23 sing N N 108 ILE CD1 HD11 sing N N 109 ILE CD1 HD12 sing N N 110 ILE CD1 HD13 sing N N 111 ILE OXT HXT sing N N 112 LEU N CA sing N N 113 LEU N H sing N N 114 LEU N H2 sing N N 115 LEU CA C sing N N 116 LEU CA CB sing N N 117 LEU CA HA sing N N 118 LEU C O doub N N 119 LEU C OXT sing N N 120 LEU CB CG sing N N 121 LEU CB HB2 sing N N 122 LEU CB HB3 sing N N 123 LEU CG CD1 sing N N 124 LEU CG CD2 sing N N 125 LEU CG HG sing N N 126 LEU CD1 HD11 sing N N 127 LEU CD1 HD12 sing N N 128 LEU CD1 HD13 sing N N 129 LEU CD2 HD21 sing N N 130 LEU CD2 HD22 sing N N 131 LEU CD2 HD23 sing N N 132 LEU OXT HXT sing N N 133 MET N CA sing N N 134 MET N H sing N N 135 MET N H2 sing N N 136 MET CA C sing N N 137 MET CA CB sing N N 138 MET CA HA sing N N 139 MET C O doub N N 140 MET C OXT sing N N 141 MET CB CG sing N N 142 MET CB HB2 sing N N 143 MET CB HB3 sing N N 144 MET CG SD sing N N 145 MET CG HG2 sing N N 146 MET CG HG3 sing N N 147 MET SD CE sing N N 148 MET CE HE1 sing N N 149 MET CE HE2 sing N N 150 MET CE HE3 sing N N 151 MET OXT HXT sing N N 152 SER N CA sing N N 153 SER N H sing N N 154 SER N H2 sing N N 155 SER CA C sing N N 156 SER CA CB sing N N 157 SER CA HA sing N N 158 SER C O doub N N 159 SER C OXT sing N N 160 SER CB OG sing N N 161 SER CB HB2 sing N N 162 SER CB HB3 sing N N 163 SER OG HG sing N N 164 SER OXT HXT sing N N 165 THR N CA sing N N 166 THR N H sing N N 167 THR N H2 sing N N 168 THR CA C sing N N 169 THR CA CB sing N N 170 THR CA HA sing N N 171 THR C O doub N N 172 THR C OXT sing N N 173 THR CB OG1 sing N N 174 THR CB CG2 sing N N 175 THR CB HB sing N N 176 THR OG1 HG1 sing N N 177 THR CG2 HG21 sing N N 178 THR CG2 HG22 sing N N 179 THR CG2 HG23 sing N N 180 THR OXT HXT sing N N 181 TYR N CA sing N N 182 TYR N H sing N N 183 TYR N H2 sing N N 184 TYR CA C sing N N 185 TYR CA CB sing N N 186 TYR CA HA sing N N 187 TYR C O doub N N 188 TYR C OXT sing N N 189 TYR CB CG sing N N 190 TYR CB HB2 sing N N 191 TYR CB HB3 sing N N 192 TYR CG CD1 doub Y N 193 TYR CG CD2 sing Y N 194 TYR CD1 CE1 sing Y N 195 TYR CD1 HD1 sing N N 196 TYR CD2 CE2 doub Y N 197 TYR CD2 HD2 sing N N 198 TYR CE1 CZ doub Y N 199 TYR CE1 HE1 sing N N 200 TYR CE2 CZ sing Y N 201 TYR CE2 HE2 sing N N 202 TYR CZ OH sing N N 203 TYR OH HH sing N N 204 TYR OXT HXT sing N N 205 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker DRX 600 2 ? JEOL ALPHA 600 # _atom_sites.entry_id 1VD9 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_