data_1VF9 # _entry.id 1VF9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VF9 pdb_00001vf9 10.2210/pdb1vf9/pdb RCSB RCSB006554 ? ? WWPDB D_1000006554 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1VFC _pdbx_database_related.details 'DNA Complex Of Human Trf2' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VF9 _pdbx_database_status.recvd_initial_deposition_date 2004-04-12 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nishimura, Y.' 1 'Hanaoka, S.' 2 # _citation.id primary _citation.title 'Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 14 _citation.page_first 119 _citation.page_last 130 _citation.year 2005 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15608118 _citation.pdbx_database_id_DOI 10.1110/ps.04983705 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hanaoka, S.' 1 ? primary 'Nagadoi, A.' 2 ? primary 'Nishimura, Y.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Telomeric repeat binding factor 2' _entity.formula_weight 7551.663 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'DNA BINDING DOMAIN' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TTAGGG repeat binding factor 2, Telomeric DNA binding protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MEDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN _entity_poly.pdbx_seq_one_letter_code_can MEDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 ASP n 1 4 SER n 1 5 THR n 1 6 THR n 1 7 ASN n 1 8 ILE n 1 9 THR n 1 10 LYS n 1 11 LYS n 1 12 GLN n 1 13 LYS n 1 14 TRP n 1 15 THR n 1 16 VAL n 1 17 GLU n 1 18 GLU n 1 19 SER n 1 20 GLU n 1 21 TRP n 1 22 VAL n 1 23 LYS n 1 24 ALA n 1 25 GLY n 1 26 VAL n 1 27 GLN n 1 28 LYS n 1 29 TYR n 1 30 GLY n 1 31 GLU n 1 32 GLY n 1 33 ASN n 1 34 TRP n 1 35 ALA n 1 36 ALA n 1 37 ILE n 1 38 SER n 1 39 LYS n 1 40 ASN n 1 41 TYR n 1 42 PRO n 1 43 PHE n 1 44 VAL n 1 45 ASN n 1 46 ARG n 1 47 THR n 1 48 ALA n 1 49 VAL n 1 50 MET n 1 51 ILE n 1 52 LYS n 1 53 ASP n 1 54 ARG n 1 55 TRP n 1 56 ARG n 1 57 THR n 1 58 MET n 1 59 LYS n 1 60 ARG n 1 61 LEU n 1 62 GLY n 1 63 MET n 1 64 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET23b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TERF2_HUMAN _struct_ref.pdbx_db_accession Q15554 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code EDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN _struct_ref.pdbx_align_begin 438 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VF9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 64 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q15554 _struct_ref_seq.db_align_beg 438 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 500 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 438 _struct_ref_seq.pdbx_auth_seq_align_end 500 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1VF9 _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q15554 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'initiating methionine' _struct_ref_seq_dif.pdbx_auth_seq_num 437 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 2 1 3D_15N-separated_NOESY 2 2 1 HNHA 3 2 1 3D_13N-separated_TOCSY 4 1 1 3D_13C-separated_NOESY 5 1 1 3D_13C-separated_TOCSY 6 1 1 3D_13C-separated_COSY 7 1 1 CBCACONH 8 1 1 CBCANH 9 1 1 HNCO 10 1 1 'HN(CA)CO' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 300 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.020M _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.0-1.5mM TRF2 labeled with 15N and 13C; 20mM potassium phosphate buffer, 90% H2O, 10% D2O' '90% H2O/10% D2O' 2 '1.0-1.5mM TRF2 labeled with 15N,and DNA; 20mM potassium phosphate buffer, 90% H2O, 10% D2O' '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker DMX 600 2 ? Bruker AVANCE 800 # _pdbx_nmr_refine.entry_id 1VF9 _pdbx_nmr_refine.method 'distance geometry, simulated annealing' _pdbx_nmr_refine.details ;the structures are based on a total of 910 restraints, 869 are NOE-derived distance constraints, 41 dihedral angle restraints. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1VF9 _pdbx_nmr_details.text 'The structure was determined using triple-resonance NMR spectroscopy.' # _pdbx_nmr_ensemble.entry_id 1VF9 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 25 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal NMRPipe 2.0 processing Delaglio 1 Sparky 3.98 'data analysis' Goddard 2 CNS 1.0 'structure solution' ? 3 CNS 1.0 refinement ? 4 # _exptl.entry_id 1VF9 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1VF9 _struct.title 'Solution Structure Of Human Trf2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VF9 _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text 'Myb, helix-turn-helix, telomere, DNA BINDING PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 15 ? GLY A 30 ? THR A 451 GLY A 466 1 ? 16 HELX_P HELX_P2 2 ASN A 33 ? TYR A 41 ? ASN A 469 TYR A 477 1 ? 9 HELX_P HELX_P3 3 ALA A 48 ? GLY A 62 ? ALA A 484 GLY A 498 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 1VF9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1VF9 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 437 437 MET MET A . n A 1 2 GLU 2 438 438 GLU GLU A . n A 1 3 ASP 3 439 439 ASP ASP A . n A 1 4 SER 4 440 440 SER SER A . n A 1 5 THR 5 441 441 THR THR A . n A 1 6 THR 6 442 442 THR THR A . n A 1 7 ASN 7 443 443 ASN ASN A . n A 1 8 ILE 8 444 444 ILE ILE A . n A 1 9 THR 9 445 445 THR THR A . n A 1 10 LYS 10 446 446 LYS LYS A . n A 1 11 LYS 11 447 447 LYS LYS A . n A 1 12 GLN 12 448 448 GLN GLN A . n A 1 13 LYS 13 449 449 LYS LYS A . n A 1 14 TRP 14 450 450 TRP TRP A . n A 1 15 THR 15 451 451 THR THR A . n A 1 16 VAL 16 452 452 VAL VAL A . n A 1 17 GLU 17 453 453 GLU GLU A . n A 1 18 GLU 18 454 454 GLU GLU A . n A 1 19 SER 19 455 455 SER SER A . n A 1 20 GLU 20 456 456 GLU GLU A . n A 1 21 TRP 21 457 457 TRP TRP A . n A 1 22 VAL 22 458 458 VAL VAL A . n A 1 23 LYS 23 459 459 LYS LYS A . n A 1 24 ALA 24 460 460 ALA ALA A . n A 1 25 GLY 25 461 461 GLY GLY A . n A 1 26 VAL 26 462 462 VAL VAL A . n A 1 27 GLN 27 463 463 GLN GLN A . n A 1 28 LYS 28 464 464 LYS LYS A . n A 1 29 TYR 29 465 465 TYR TYR A . n A 1 30 GLY 30 466 466 GLY GLY A . n A 1 31 GLU 31 467 467 GLU GLU A . n A 1 32 GLY 32 468 468 GLY GLY A . n A 1 33 ASN 33 469 469 ASN ASN A . n A 1 34 TRP 34 470 470 TRP TRP A . n A 1 35 ALA 35 471 471 ALA ALA A . n A 1 36 ALA 36 472 472 ALA ALA A . n A 1 37 ILE 37 473 473 ILE ILE A . n A 1 38 SER 38 474 474 SER SER A . n A 1 39 LYS 39 475 475 LYS LYS A . n A 1 40 ASN 40 476 476 ASN ASN A . n A 1 41 TYR 41 477 477 TYR TYR A . n A 1 42 PRO 42 478 478 PRO PRO A . n A 1 43 PHE 43 479 479 PHE PHE A . n A 1 44 VAL 44 480 480 VAL VAL A . n A 1 45 ASN 45 481 481 ASN ASN A . n A 1 46 ARG 46 482 482 ARG ARG A . n A 1 47 THR 47 483 483 THR THR A . n A 1 48 ALA 48 484 484 ALA ALA A . n A 1 49 VAL 49 485 485 VAL VAL A . n A 1 50 MET 50 486 486 MET MET A . n A 1 51 ILE 51 487 487 ILE ILE A . n A 1 52 LYS 52 488 488 LYS LYS A . n A 1 53 ASP 53 489 489 ASP ASP A . n A 1 54 ARG 54 490 490 ARG ARG A . n A 1 55 TRP 55 491 491 TRP TRP A . n A 1 56 ARG 56 492 492 ARG ARG A . n A 1 57 THR 57 493 493 THR THR A . n A 1 58 MET 58 494 494 MET MET A . n A 1 59 LYS 59 495 495 LYS LYS A . n A 1 60 ARG 60 496 496 ARG ARG A . n A 1 61 LEU 61 497 497 LEU LEU A . n A 1 62 GLY 62 498 498 GLY GLY A . n A 1 63 MET 63 499 499 MET MET A . n A 1 64 ASN 64 500 500 ASN ASN A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-05-17 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 8 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 438 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 HG1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 THR _pdbx_validate_close_contact.auth_seq_id_2 442 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.57 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 442 ? ? -65.26 -81.62 2 1 ASN A 443 ? ? -175.64 37.63 3 1 THR A 445 ? ? -154.74 52.34 4 1 LYS A 449 ? ? -63.57 -71.49 5 1 THR A 451 ? ? -134.13 -159.28 6 1 VAL A 480 ? ? -67.75 -135.39 7 1 ASN A 481 ? ? -87.88 44.32 8 1 THR A 483 ? ? 55.30 -148.67 9 2 GLU A 438 ? ? -153.48 -47.50 10 2 ASP A 439 ? ? 55.32 168.61 11 2 THR A 441 ? ? -156.52 -57.32 12 2 ASN A 443 ? ? -171.83 73.82 13 2 LYS A 447 ? ? -90.28 55.88 14 2 GLN A 448 ? ? -114.51 51.91 15 2 ASN A 469 ? ? -116.29 75.88 16 2 ASN A 481 ? ? 48.70 26.73 17 2 THR A 483 ? ? 56.21 -156.97 18 3 THR A 441 ? ? -152.38 -68.12 19 3 ASN A 469 ? ? -99.19 55.22 20 3 VAL A 480 ? ? -63.69 -141.19 21 3 THR A 483 ? ? 56.60 -149.72 22 3 MET A 499 ? ? -140.42 -44.23 23 4 THR A 441 ? ? -142.51 -42.97 24 4 ASN A 443 ? ? -131.04 -64.82 25 4 ILE A 444 ? ? 52.78 72.61 26 4 THR A 445 ? ? -56.03 98.16 27 4 LYS A 446 ? ? -90.10 44.48 28 4 GLN A 448 ? ? -62.44 85.20 29 4 TRP A 450 ? ? 48.63 -165.67 30 4 ASN A 469 ? ? -118.44 72.17 31 4 VAL A 480 ? ? -63.24 -141.86 32 4 THR A 483 ? ? 55.05 -174.12 33 5 THR A 441 ? ? -147.18 -51.13 34 5 THR A 442 ? ? -77.06 -71.15 35 5 LYS A 447 ? ? -69.29 -165.53 36 5 GLN A 448 ? ? 52.85 74.15 37 5 THR A 451 ? ? -105.37 -165.42 38 5 ASN A 469 ? ? -102.11 49.01 39 5 VAL A 480 ? ? -63.85 -142.05 40 5 THR A 483 ? ? 54.74 -152.66 41 6 GLU A 438 ? ? -162.81 -59.06 42 6 THR A 441 ? ? -167.64 -40.84 43 6 THR A 442 ? ? -90.86 30.48 44 6 ASN A 443 ? ? -172.84 -46.22 45 6 THR A 445 ? ? 52.40 91.70 46 6 VAL A 480 ? ? -130.77 -36.21 47 6 ASN A 481 ? ? -162.59 37.93 48 6 THR A 483 ? ? 53.35 -146.02 49 6 MET A 499 ? ? -148.15 19.84 50 7 GLU A 438 ? ? -161.47 35.31 51 7 ASP A 439 ? ? -132.15 -157.23 52 7 SER A 440 ? ? 67.48 -61.84 53 7 LYS A 447 ? ? -58.20 99.97 54 7 LYS A 449 ? ? -74.16 -72.51 55 7 THR A 451 ? ? -115.79 -164.33 56 7 THR A 483 ? ? 53.80 -149.46 57 8 GLU A 438 ? ? -139.79 -75.22 58 8 THR A 441 ? ? -147.04 -44.88 59 8 ASN A 443 ? ? -81.08 -83.42 60 8 THR A 445 ? ? -146.06 27.45 61 8 LYS A 446 ? ? -90.32 38.98 62 8 GLN A 448 ? ? -166.54 -47.62 63 8 LYS A 449 ? ? -63.48 78.70 64 8 TRP A 450 ? ? 50.85 -164.58 65 8 THR A 451 ? ? -130.51 -151.52 66 8 ASN A 469 ? ? -102.83 67.38 67 8 VAL A 480 ? ? -144.88 -38.97 68 8 THR A 483 ? ? 54.40 -157.72 69 9 THR A 441 ? ? -161.97 -62.18 70 9 ASN A 469 ? ? -101.36 74.27 71 9 ASN A 481 ? ? -169.74 30.50 72 9 THR A 483 ? ? 53.15 -155.38 73 9 MET A 499 ? ? -134.91 -44.64 74 10 ASP A 439 ? ? -89.18 48.64 75 10 GLN A 448 ? ? 59.00 110.93 76 10 THR A 451 ? ? -157.58 -142.84 77 10 ASN A 481 ? ? -170.04 30.50 78 10 THR A 483 ? ? 55.02 -158.00 79 10 LEU A 497 ? ? -149.00 21.28 80 11 GLU A 438 ? ? -93.76 36.30 81 11 THR A 442 ? ? -90.02 -69.45 82 11 ASN A 443 ? ? -172.73 40.33 83 11 ILE A 444 ? ? 53.53 78.59 84 11 LYS A 449 ? ? -87.48 47.61 85 11 TRP A 450 ? ? 49.13 -165.90 86 11 ASN A 469 ? ? -102.31 52.84 87 11 THR A 483 ? ? 55.52 -160.33 88 11 MET A 499 ? ? -148.96 -40.79 89 12 ASP A 439 ? ? 53.82 -170.37 90 12 THR A 441 ? ? -161.83 -49.85 91 12 ILE A 444 ? ? 58.10 112.81 92 12 ASN A 469 ? ? -111.31 69.69 93 12 THR A 483 ? ? 54.82 -163.71 94 13 GLU A 438 ? ? -148.52 23.04 95 13 THR A 441 ? ? -148.35 -46.35 96 13 ASN A 443 ? ? -174.39 55.10 97 13 GLN A 448 ? ? -141.32 31.92 98 13 TRP A 450 ? ? 54.56 -168.77 99 13 THR A 483 ? ? 55.82 -169.98 100 13 MET A 499 ? ? -156.91 -41.87 101 14 ASP A 439 ? ? -135.73 -42.82 102 14 THR A 442 ? ? -87.26 -86.15 103 14 ASN A 443 ? ? -158.63 24.09 104 14 LYS A 447 ? ? -66.11 81.64 105 14 ASN A 469 ? ? -113.85 67.33 106 14 VAL A 480 ? ? -63.07 -141.80 107 14 THR A 483 ? ? 54.31 -169.90 108 15 SER A 440 ? ? 67.05 -58.08 109 15 THR A 442 ? ? -71.71 -86.25 110 15 ILE A 444 ? ? 56.56 168.22 111 15 GLU A 467 ? ? -58.18 106.72 112 15 THR A 483 ? ? 55.17 -164.17 113 16 ASP A 439 ? ? -164.34 -39.47 114 16 TRP A 450 ? ? 52.43 -162.92 115 16 ASN A 469 ? ? -105.27 49.32 116 16 ASN A 481 ? ? -154.78 37.80 117 16 THR A 483 ? ? 53.51 -146.24 118 16 MET A 499 ? ? -144.71 -42.23 119 17 ASP A 439 ? ? -170.64 -47.38 120 17 ASN A 443 ? ? -135.24 -86.33 121 17 THR A 445 ? ? 58.01 111.88 122 17 TRP A 450 ? ? 53.61 -171.14 123 17 VAL A 480 ? ? -139.05 -36.89 124 17 THR A 483 ? ? 54.77 -145.28 125 17 MET A 499 ? ? -160.04 -39.86 126 18 GLU A 438 ? ? -114.76 71.88 127 18 ILE A 444 ? ? 52.66 92.10 128 18 THR A 451 ? ? -127.83 -166.63 129 18 ASN A 469 ? ? -116.01 58.29 130 18 THR A 483 ? ? 55.32 -153.60 131 18 LEU A 497 ? ? -105.27 42.11 132 18 MET A 499 ? ? -142.84 -42.74 133 19 ASP A 439 ? ? -138.05 -55.93 134 19 THR A 442 ? ? -78.14 -79.12 135 19 ASN A 443 ? ? -171.78 62.64 136 19 THR A 445 ? ? 53.11 71.44 137 19 GLN A 448 ? ? -128.57 -60.99 138 19 TRP A 450 ? ? 54.86 174.08 139 19 THR A 483 ? ? 54.86 176.79 140 19 LEU A 497 ? ? -134.87 -43.71 141 19 MET A 499 ? ? -155.52 -51.31 142 20 GLU A 438 ? ? -158.73 49.43 143 20 ASP A 439 ? ? -146.65 -51.17 144 20 ILE A 444 ? ? 56.43 105.90 145 20 LYS A 449 ? ? -57.60 98.99 146 20 TRP A 450 ? ? 52.56 -167.33 147 20 VAL A 480 ? ? -159.95 -39.32 148 20 THR A 483 ? ? 55.70 -145.43 149 21 THR A 442 ? ? -89.20 -72.98 150 21 ILE A 444 ? ? 53.29 75.57 151 21 LYS A 447 ? ? -86.81 -151.93 152 21 ASN A 469 ? ? -116.07 65.07 153 21 THR A 483 ? ? 55.82 -149.46 154 21 MET A 499 ? ? -143.97 27.73 155 22 GLU A 438 ? ? -135.34 -46.10 156 22 THR A 441 ? ? -151.46 -43.85 157 22 ASN A 443 ? ? -167.78 39.17 158 22 GLN A 448 ? ? -115.20 -92.13 159 22 LYS A 449 ? ? -67.02 91.51 160 22 TRP A 450 ? ? 51.80 -173.52 161 22 THR A 451 ? ? -139.69 -151.58 162 22 ASN A 469 ? ? -110.71 78.03 163 22 VAL A 480 ? ? -64.20 -138.29 164 22 THR A 483 ? ? 52.99 -169.78 165 23 GLU A 438 ? ? -142.75 -74.77 166 23 THR A 441 ? ? -136.83 -53.62 167 23 ILE A 444 ? ? 52.70 75.57 168 23 LYS A 447 ? ? -67.34 89.83 169 23 GLN A 448 ? ? -161.80 59.66 170 23 TRP A 450 ? ? 55.32 171.01 171 23 ASN A 469 ? ? -98.32 55.48 172 23 THR A 483 ? ? 53.75 -161.21 173 24 GLU A 467 ? ? -63.37 97.18 174 24 VAL A 480 ? ? -131.81 -39.64 175 24 ASN A 481 ? ? -158.61 40.81 176 24 THR A 483 ? ? 54.49 -147.20 177 25 GLU A 438 ? ? -104.65 41.08 178 25 ASP A 439 ? ? 54.43 -175.97 179 25 THR A 441 ? ? -157.99 -65.02 180 25 LYS A 447 ? ? -79.23 -169.51 181 25 TRP A 450 ? ? 52.45 -172.59 182 25 THR A 451 ? ? -145.10 -151.67 183 25 ASN A 469 ? ? -103.83 67.50 184 25 VAL A 480 ? ? -149.78 -40.64 185 25 ASN A 481 ? ? -141.36 36.05 186 25 THR A 483 ? ? 54.23 -150.49 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 482 ? ? 0.207 'SIDE CHAIN' 2 1 ARG A 490 ? ? 0.269 'SIDE CHAIN' 3 1 ARG A 492 ? ? 0.290 'SIDE CHAIN' 4 1 ARG A 496 ? ? 0.315 'SIDE CHAIN' 5 2 ARG A 482 ? ? 0.219 'SIDE CHAIN' 6 2 ARG A 490 ? ? 0.295 'SIDE CHAIN' 7 2 ARG A 492 ? ? 0.303 'SIDE CHAIN' 8 2 ARG A 496 ? ? 0.289 'SIDE CHAIN' 9 3 ARG A 482 ? ? 0.255 'SIDE CHAIN' 10 3 ARG A 490 ? ? 0.245 'SIDE CHAIN' 11 3 ARG A 492 ? ? 0.292 'SIDE CHAIN' 12 3 ARG A 496 ? ? 0.220 'SIDE CHAIN' 13 4 ARG A 482 ? ? 0.318 'SIDE CHAIN' 14 4 ARG A 490 ? ? 0.141 'SIDE CHAIN' 15 4 ARG A 492 ? ? 0.280 'SIDE CHAIN' 16 4 ARG A 496 ? ? 0.274 'SIDE CHAIN' 17 5 ARG A 482 ? ? 0.207 'SIDE CHAIN' 18 5 ARG A 490 ? ? 0.232 'SIDE CHAIN' 19 5 ARG A 492 ? ? 0.184 'SIDE CHAIN' 20 5 ARG A 496 ? ? 0.194 'SIDE CHAIN' 21 6 ARG A 482 ? ? 0.209 'SIDE CHAIN' 22 6 ARG A 490 ? ? 0.273 'SIDE CHAIN' 23 6 ARG A 492 ? ? 0.278 'SIDE CHAIN' 24 6 ARG A 496 ? ? 0.149 'SIDE CHAIN' 25 7 ARG A 482 ? ? 0.313 'SIDE CHAIN' 26 7 ARG A 490 ? ? 0.297 'SIDE CHAIN' 27 7 ARG A 492 ? ? 0.285 'SIDE CHAIN' 28 7 ARG A 496 ? ? 0.179 'SIDE CHAIN' 29 8 ARG A 482 ? ? 0.160 'SIDE CHAIN' 30 8 ARG A 490 ? ? 0.317 'SIDE CHAIN' 31 8 ARG A 492 ? ? 0.269 'SIDE CHAIN' 32 8 ARG A 496 ? ? 0.148 'SIDE CHAIN' 33 9 ARG A 482 ? ? 0.315 'SIDE CHAIN' 34 9 ARG A 490 ? ? 0.316 'SIDE CHAIN' 35 9 ARG A 492 ? ? 0.159 'SIDE CHAIN' 36 9 ARG A 496 ? ? 0.316 'SIDE CHAIN' 37 10 ARG A 482 ? ? 0.270 'SIDE CHAIN' 38 10 ARG A 490 ? ? 0.165 'SIDE CHAIN' 39 10 ARG A 492 ? ? 0.282 'SIDE CHAIN' 40 10 ARG A 496 ? ? 0.313 'SIDE CHAIN' 41 11 ARG A 482 ? ? 0.284 'SIDE CHAIN' 42 11 ARG A 490 ? ? 0.301 'SIDE CHAIN' 43 11 ARG A 492 ? ? 0.281 'SIDE CHAIN' 44 11 ARG A 496 ? ? 0.254 'SIDE CHAIN' 45 12 ARG A 482 ? ? 0.316 'SIDE CHAIN' 46 12 ARG A 490 ? ? 0.172 'SIDE CHAIN' 47 12 ARG A 492 ? ? 0.293 'SIDE CHAIN' 48 12 ARG A 496 ? ? 0.317 'SIDE CHAIN' 49 13 ARG A 482 ? ? 0.288 'SIDE CHAIN' 50 13 ARG A 490 ? ? 0.269 'SIDE CHAIN' 51 13 ARG A 492 ? ? 0.163 'SIDE CHAIN' 52 13 ARG A 496 ? ? 0.163 'SIDE CHAIN' 53 14 ARG A 482 ? ? 0.276 'SIDE CHAIN' 54 14 ARG A 490 ? ? 0.248 'SIDE CHAIN' 55 14 ARG A 492 ? ? 0.147 'SIDE CHAIN' 56 14 ARG A 496 ? ? 0.293 'SIDE CHAIN' 57 15 ARG A 482 ? ? 0.157 'SIDE CHAIN' 58 15 ARG A 490 ? ? 0.217 'SIDE CHAIN' 59 15 ARG A 492 ? ? 0.156 'SIDE CHAIN' 60 15 ARG A 496 ? ? 0.310 'SIDE CHAIN' 61 16 ARG A 482 ? ? 0.316 'SIDE CHAIN' 62 16 ARG A 490 ? ? 0.193 'SIDE CHAIN' 63 16 ARG A 492 ? ? 0.292 'SIDE CHAIN' 64 16 ARG A 496 ? ? 0.317 'SIDE CHAIN' 65 17 ARG A 482 ? ? 0.169 'SIDE CHAIN' 66 17 ARG A 490 ? ? 0.317 'SIDE CHAIN' 67 17 ARG A 492 ? ? 0.315 'SIDE CHAIN' 68 17 ARG A 496 ? ? 0.213 'SIDE CHAIN' 69 18 ARG A 482 ? ? 0.312 'SIDE CHAIN' 70 18 ARG A 490 ? ? 0.291 'SIDE CHAIN' 71 18 ARG A 492 ? ? 0.253 'SIDE CHAIN' 72 18 ARG A 496 ? ? 0.316 'SIDE CHAIN' 73 19 ARG A 482 ? ? 0.290 'SIDE CHAIN' 74 19 ARG A 490 ? ? 0.278 'SIDE CHAIN' 75 19 ARG A 492 ? ? 0.313 'SIDE CHAIN' 76 19 ARG A 496 ? ? 0.318 'SIDE CHAIN' 77 20 ARG A 482 ? ? 0.247 'SIDE CHAIN' 78 20 ARG A 490 ? ? 0.255 'SIDE CHAIN' 79 20 ARG A 492 ? ? 0.276 'SIDE CHAIN' 80 20 ARG A 496 ? ? 0.283 'SIDE CHAIN' 81 21 ARG A 482 ? ? 0.317 'SIDE CHAIN' 82 21 ARG A 490 ? ? 0.316 'SIDE CHAIN' 83 21 ARG A 492 ? ? 0.316 'SIDE CHAIN' 84 21 ARG A 496 ? ? 0.218 'SIDE CHAIN' 85 22 ARG A 482 ? ? 0.256 'SIDE CHAIN' 86 22 ARG A 490 ? ? 0.205 'SIDE CHAIN' 87 22 ARG A 492 ? ? 0.293 'SIDE CHAIN' 88 22 ARG A 496 ? ? 0.308 'SIDE CHAIN' 89 23 ARG A 482 ? ? 0.316 'SIDE CHAIN' 90 23 ARG A 490 ? ? 0.282 'SIDE CHAIN' 91 23 ARG A 492 ? ? 0.317 'SIDE CHAIN' 92 23 ARG A 496 ? ? 0.230 'SIDE CHAIN' 93 24 ARG A 482 ? ? 0.278 'SIDE CHAIN' 94 24 ARG A 490 ? ? 0.310 'SIDE CHAIN' 95 24 ARG A 492 ? ? 0.240 'SIDE CHAIN' 96 24 ARG A 496 ? ? 0.270 'SIDE CHAIN' 97 25 ARG A 482 ? ? 0.313 'SIDE CHAIN' 98 25 ARG A 490 ? ? 0.201 'SIDE CHAIN' 99 25 ARG A 492 ? ? 0.236 'SIDE CHAIN' 100 25 ARG A 496 ? ? 0.169 'SIDE CHAIN' #