data_1VFA # _entry.id 1VFA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1VFA WWPDB D_1000177025 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VFA _pdbx_database_status.recvd_initial_deposition_date 1993-12-03 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site ? _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bhat, T.N.' 1 'Poljak, R.J.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Bound water molecules and conformational stabilization help mediate an antigen-antibody association.' Proc.Natl.Acad.Sci.USA 91 1089 1093 1994 PNASA6 US 0027-8424 0040 ? 8302837 10.1073/pnas.91.3.1089 1 'Small Rearrangements in Structures of Fv and Fab Fragments of an Antibody D1.3 On Antigen Binding' Nature 347 483 ? 1990 NATUAS UK 0028-0836 0006 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bhat, T.N.' 1 primary 'Bentley, G.A.' 2 primary 'Boulot, G.' 3 primary 'Greene, M.I.' 4 primary 'Tello, D.' 5 primary ;Dall'Acqua, W. ; 6 primary 'Souchon, H.' 7 primary 'Schwarz, F.P.' 8 primary 'Mariuzza, R.A.' 9 primary 'Poljak, R.J.' 10 1 'Bhat, T.N.' 11 1 'Bentley, G.A.' 12 1 'Fischmann, T.O.' 13 1 'Boulot, G.' 14 1 'Poljak, R.J.' 15 # _cell.entry_id 1VFA _cell.length_a 90.600 _cell.length_b 90.600 _cell.length_c 56.400 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VFA _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'IGG1-KAPPA D1.3 FV (LIGHT CHAIN)' 11858.171 1 ? ? ? ? 2 polymer man 'IGG1-KAPPA D1.3 FV (HEAVY CHAIN)' 12857.275 1 ? ? ? ? 3 water nat water 18.015 23 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQP EDFGSYYCQHFWSTPRTFGGGTKLEIKR ; ;DIVLTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYYTTTLADGVPSRFSGSGSGTQYSLKINSLQP EDFGSYYCQHFWSTPRTFGGGTKLEIKR ; A ? 2 'polypeptide(L)' no no ;QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFL KMNSLHTDDTARYYCARERDYRLDYWGQGTTLTVSS ; ;QVQLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFL KMNSLHTDDTARYYCARERDYRLDYWGQGTTLTVSS ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ILE n 1 3 VAL n 1 4 LEU n 1 5 THR n 1 6 GLN n 1 7 SER n 1 8 PRO n 1 9 ALA n 1 10 SER n 1 11 LEU n 1 12 SER n 1 13 ALA n 1 14 SER n 1 15 VAL n 1 16 GLY n 1 17 GLU n 1 18 THR n 1 19 VAL n 1 20 THR n 1 21 ILE n 1 22 THR n 1 23 CYS n 1 24 ARG n 1 25 ALA n 1 26 SER n 1 27 GLY n 1 28 ASN n 1 29 ILE n 1 30 HIS n 1 31 ASN n 1 32 TYR n 1 33 LEU n 1 34 ALA n 1 35 TRP n 1 36 TYR n 1 37 GLN n 1 38 GLN n 1 39 LYS n 1 40 GLN n 1 41 GLY n 1 42 LYS n 1 43 SER n 1 44 PRO n 1 45 GLN n 1 46 LEU n 1 47 LEU n 1 48 VAL n 1 49 TYR n 1 50 TYR n 1 51 THR n 1 52 THR n 1 53 THR n 1 54 LEU n 1 55 ALA n 1 56 ASP n 1 57 GLY n 1 58 VAL n 1 59 PRO n 1 60 SER n 1 61 ARG n 1 62 PHE n 1 63 SER n 1 64 GLY n 1 65 SER n 1 66 GLY n 1 67 SER n 1 68 GLY n 1 69 THR n 1 70 GLN n 1 71 TYR n 1 72 SER n 1 73 LEU n 1 74 LYS n 1 75 ILE n 1 76 ASN n 1 77 SER n 1 78 LEU n 1 79 GLN n 1 80 PRO n 1 81 GLU n 1 82 ASP n 1 83 PHE n 1 84 GLY n 1 85 SER n 1 86 TYR n 1 87 TYR n 1 88 CYS n 1 89 GLN n 1 90 HIS n 1 91 PHE n 1 92 TRP n 1 93 SER n 1 94 THR n 1 95 PRO n 1 96 ARG n 1 97 THR n 1 98 PHE n 1 99 GLY n 1 100 GLY n 1 101 GLY n 1 102 THR n 1 103 LYS n 1 104 LEU n 1 105 GLU n 1 106 ILE n 1 107 LYS n 1 108 ARG n 2 1 GLN n 2 2 VAL n 2 3 GLN n 2 4 LEU n 2 5 GLN n 2 6 GLU n 2 7 SER n 2 8 GLY n 2 9 PRO n 2 10 GLY n 2 11 LEU n 2 12 VAL n 2 13 ALA n 2 14 PRO n 2 15 SER n 2 16 GLN n 2 17 SER n 2 18 LEU n 2 19 SER n 2 20 ILE n 2 21 THR n 2 22 CYS n 2 23 THR n 2 24 VAL n 2 25 SER n 2 26 GLY n 2 27 PHE n 2 28 SER n 2 29 LEU n 2 30 THR n 2 31 GLY n 2 32 TYR n 2 33 GLY n 2 34 VAL n 2 35 ASN n 2 36 TRP n 2 37 VAL n 2 38 ARG n 2 39 GLN n 2 40 PRO n 2 41 PRO n 2 42 GLY n 2 43 LYS n 2 44 GLY n 2 45 LEU n 2 46 GLU n 2 47 TRP n 2 48 LEU n 2 49 GLY n 2 50 MET n 2 51 ILE n 2 52 TRP n 2 53 GLY n 2 54 ASP n 2 55 GLY n 2 56 ASN n 2 57 THR n 2 58 ASP n 2 59 TYR n 2 60 ASN n 2 61 SER n 2 62 ALA n 2 63 LEU n 2 64 LYS n 2 65 SER n 2 66 ARG n 2 67 LEU n 2 68 SER n 2 69 ILE n 2 70 SER n 2 71 LYS n 2 72 ASP n 2 73 ASN n 2 74 SER n 2 75 LYS n 2 76 SER n 2 77 GLN n 2 78 VAL n 2 79 PHE n 2 80 LEU n 2 81 LYS n 2 82 MET n 2 83 ASN n 2 84 SER n 2 85 LEU n 2 86 HIS n 2 87 THR n 2 88 ASP n 2 89 ASP n 2 90 THR n 2 91 ALA n 2 92 ARG n 2 93 TYR n 2 94 TYR n 2 95 CYS n 2 96 ALA n 2 97 ARG n 2 98 GLU n 2 99 ARG n 2 100 ASP n 2 101 TYR n 2 102 ARG n 2 103 LEU n 2 104 ASP n 2 105 TYR n 2 106 TRP n 2 107 GLY n 2 108 GLN n 2 109 GLY n 2 110 THR n 2 111 THR n 2 112 LEU n 2 113 THR n 2 114 VAL n 2 115 SER n 2 116 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? 'house mouse' Mus ? ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'house mouse' Mus ? ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 GB AAB30177 1 545862 1 ;DIELTQSPASLSASVGETVTITCRASGNIHNYLAWYQQKQGKSPQLLVYKAQTLADGVPSRFSGSGSGTQYSLKINSLQP EDFGSYYCQHFWSTPPWTFGGGTKLEIKRA ; ? 2 GB AAA69766 2 896294 1 ;DVLMTQTPLTLSVTIGQPASISCKSSQSLLHTDGKTYLIWLLQRPGQSPKRLIYLVSKLDSGVPDRFTGSGSGTDFTLKI SRVEAEDLGVYYCWQGTHFPQTFGGGTKLEIKRADAAPGSTSGSGKSSEGKGQVQLQESGPGLVAPSQSLSITCTVSGFS LTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERDYRLDYWGQ GTTVTVSSTKTTPPSVYPAAAHHHHHHGAAEQKLISEEDLNGAA ; ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VFA A 1 ? 108 ? 545862 1 ? 109 ? 1 108 2 2 1VFA B 1 ? 116 ? 896294 133 ? 248 ? 1 116 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VFA VAL A 3 ? GB 545862 GLU 3 CONFLICT 3 1 1 1VFA TYR A 50 ? GB 545862 LYS 50 CONFLICT 50 2 1 1VFA THR A 51 ? GB 545862 ALA 51 CONFLICT 51 3 1 1VFA THR A 52 ? GB 545862 GLN 52 CONFLICT 52 4 1 1VFA ? A ? ? GB 545862 PRO 95 DELETION ? 5 1 1VFA ARG A 96 ? GB 545862 TRP 97 CONFLICT 96 6 2 1VFA LEU B 112 ? GB 896294 VAL 244 CONFLICT 112 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1VFA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_percent_sol 47.45 _exptl_crystal.description ? # _refine.entry_id 1VFA _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.8 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.158 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.158 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1741 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 23 _refine_hist.number_atoms_total 1764 _refine_hist.d_res_high 1.8 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 2.8 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1VFA _struct.title 'BOUND WATER MOLECULES AND CONFORMATIONAL STABILIZATION HELP MEDIATE AN ANTIGEN-ANTIBODY ASSOCIATION' _struct.pdbx_descriptor 'FV FRAGMENT OF MOUSE MONOCLONAL ANTIBODY D1.3 (BALB/C, IGG1, K)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VFA _struct_keywords.pdbx_keywords IMMUNOGLOBULIN _struct_keywords.text IMMUNOGLOBULIN # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 79 ? PHE A 83 ? GLN A 79 PHE A 83 5 ? 5 HELX_P HELX_P2 2 HIS B 86 ? THR B 90 ? HIS B 86 THR B 90 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 88 SG ? ? A CYS 23 A CYS 88 1_555 ? ? ? ? ? ? ? 2.009 ? disulf2 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 95 SG ? ? B CYS 22 B CYS 95 1_555 ? ? ? ? ? ? ? 2.012 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 7 A . ? SER 7 A PRO 8 A ? PRO 8 A 1 -9.67 2 THR 94 A . ? THR 94 A PRO 95 A ? PRO 95 A 1 -1.87 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 4 ? D ? 5 ? E ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel E 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 4 ? SER A 7 ? LEU A 4 SER A 7 A 2 VAL A 19 ? ALA A 25 ? VAL A 19 ALA A 25 A 3 GLN A 70 ? ILE A 75 ? GLN A 70 ILE A 75 A 4 PHE A 62 ? SER A 67 ? PHE A 62 SER A 67 B 1 SER A 10 ? ALA A 13 ? SER A 10 ALA A 13 B 2 THR A 102 ? ILE A 106 ? THR A 102 ILE A 106 B 3 GLY A 84 ? HIS A 90 ? GLY A 84 HIS A 90 B 4 LEU A 33 ? GLN A 38 ? LEU A 33 GLN A 38 B 5 GLN A 45 ? TYR A 49 ? GLN A 45 TYR A 49 B 6 THR A 53 ? LEU A 54 ? THR A 53 LEU A 54 C 1 GLN B 3 ? SER B 7 ? GLN B 3 SER B 7 C 2 LEU B 18 ? SER B 25 ? LEU B 18 SER B 25 C 3 GLN B 77 ? MET B 82 ? GLN B 77 MET B 82 C 4 LEU B 67 ? ASP B 72 ? LEU B 67 ASP B 72 D 1 THR B 57 ? TYR B 59 ? THR B 57 TYR B 59 D 2 GLU B 46 ? ILE B 51 ? GLU B 46 ILE B 51 D 3 GLY B 33 ? GLN B 39 ? GLY B 33 GLN B 39 D 4 ALA B 91 ? GLU B 98 ? ALA B 91 GLU B 98 D 5 LEU B 103 ? TRP B 106 ? LEU B 103 TRP B 106 E 1 THR B 57 ? TYR B 59 ? THR B 57 TYR B 59 E 2 GLU B 46 ? ILE B 51 ? GLU B 46 ILE B 51 E 3 GLY B 33 ? GLN B 39 ? GLY B 33 GLN B 39 E 4 ALA B 91 ? GLU B 98 ? ALA B 91 GLU B 98 E 5 THR B 110 ? VAL B 114 ? THR B 110 VAL B 114 E 6 LEU B 11 ? VAL B 12 ? LEU B 11 VAL B 12 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 7 ? O SER A 7 N THR A 22 ? N THR A 22 A 2 3 N CYS A 23 ? N CYS A 23 O TYR A 71 ? O TYR A 71 A 3 4 N LYS A 74 ? N LYS A 74 O SER A 63 ? O SER A 63 B 1 2 N LEU A 11 ? N LEU A 11 O LYS A 103 ? O LYS A 103 B 2 3 N LEU A 104 ? N LEU A 104 O GLY A 84 ? O GLY A 84 B 3 4 O GLN A 89 ? O GLN A 89 N ALA A 34 ? N ALA A 34 B 4 5 N GLN A 37 ? N GLN A 37 O GLN A 45 ? O GLN A 45 B 5 6 N TYR A 49 ? N TYR A 49 O THR A 53 ? O THR A 53 C 1 2 O SER B 7 ? O SER B 7 N THR B 21 ? N THR B 21 C 2 3 N CYS B 22 ? N CYS B 22 O VAL B 78 ? O VAL B 78 C 3 4 N LYS B 81 ? N LYS B 81 O SER B 68 ? O SER B 68 D 1 2 O ASP B 58 ? O ASP B 58 N MET B 50 ? N MET B 50 D 2 3 O ILE B 51 ? O ILE B 51 N VAL B 34 ? N VAL B 34 D 3 4 N GLN B 39 ? N GLN B 39 O ARG B 92 ? O ARG B 92 D 4 5 O ARG B 97 ? O ARG B 97 N ASP B 104 ? N ASP B 104 E 1 2 O ASP B 58 ? O ASP B 58 N MET B 50 ? N MET B 50 E 2 3 O ILE B 51 ? O ILE B 51 N VAL B 34 ? N VAL B 34 E 3 4 N GLN B 39 ? N GLN B 39 O ARG B 92 ? O ARG B 92 E 4 5 N TYR B 93 ? N TYR B 93 O THR B 110 ? O THR B 110 E 5 6 O THR B 113 ? O THR B 113 N VAL B 12 ? N VAL B 12 # _database_PDB_matrix.entry_id 1VFA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1VFA _atom_sites.fract_transf_matrix[1][1] 0.011038 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011038 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017730 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_sites_footnote.id _atom_sites_footnote.text 1 'CIS PROLINE - PRO A 8' 2 'CIS PROLINE - PRO A 95' # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 HIS 30 30 30 HIS HIS A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 TRP 35 35 35 TRP TRP A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 TYR 49 49 49 TYR TYR A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 TYR 71 71 71 TYR TYR A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 CYS 88 88 88 CYS CYS A . n A 1 89 GLN 89 89 89 GLN GLN A . n A 1 90 HIS 90 90 90 HIS HIS A . n A 1 91 PHE 91 91 91 PHE PHE A . n A 1 92 TRP 92 92 92 TRP TRP A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 ARG 108 108 108 ARG ARG A . n B 2 1 GLN 1 1 1 GLN GLN B . n B 2 2 VAL 2 2 2 VAL VAL B . n B 2 3 GLN 3 3 3 GLN GLN B . n B 2 4 LEU 4 4 4 LEU LEU B . n B 2 5 GLN 5 5 5 GLN GLN B . n B 2 6 GLU 6 6 6 GLU GLU B . n B 2 7 SER 7 7 7 SER SER B . n B 2 8 GLY 8 8 8 GLY GLY B . n B 2 9 PRO 9 9 9 PRO PRO B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 LEU 11 11 11 LEU LEU B . n B 2 12 VAL 12 12 12 VAL VAL B . n B 2 13 ALA 13 13 13 ALA ALA B . n B 2 14 PRO 14 14 14 PRO PRO B . n B 2 15 SER 15 15 15 SER SER B . n B 2 16 GLN 16 16 16 GLN GLN B . n B 2 17 SER 17 17 17 SER SER B . n B 2 18 LEU 18 18 18 LEU LEU B . n B 2 19 SER 19 19 19 SER SER B . n B 2 20 ILE 20 20 20 ILE ILE B . n B 2 21 THR 21 21 21 THR THR B . n B 2 22 CYS 22 22 22 CYS CYS B . n B 2 23 THR 23 23 23 THR THR B . n B 2 24 VAL 24 24 24 VAL VAL B . n B 2 25 SER 25 25 25 SER SER B . n B 2 26 GLY 26 26 26 GLY GLY B . n B 2 27 PHE 27 27 27 PHE PHE B . n B 2 28 SER 28 28 28 SER SER B . n B 2 29 LEU 29 29 29 LEU LEU B . n B 2 30 THR 30 30 30 THR THR B . n B 2 31 GLY 31 31 31 GLY GLY B . n B 2 32 TYR 32 32 32 TYR TYR B . n B 2 33 GLY 33 33 33 GLY GLY B . n B 2 34 VAL 34 34 34 VAL VAL B . n B 2 35 ASN 35 35 35 ASN ASN B . n B 2 36 TRP 36 36 36 TRP TRP B . n B 2 37 VAL 37 37 37 VAL VAL B . n B 2 38 ARG 38 38 38 ARG ARG B . n B 2 39 GLN 39 39 39 GLN GLN B . n B 2 40 PRO 40 40 40 PRO PRO B . n B 2 41 PRO 41 41 41 PRO PRO B . n B 2 42 GLY 42 42 42 GLY GLY B . n B 2 43 LYS 43 43 43 LYS LYS B . n B 2 44 GLY 44 44 44 GLY GLY B . n B 2 45 LEU 45 45 45 LEU LEU B . n B 2 46 GLU 46 46 46 GLU GLU B . n B 2 47 TRP 47 47 47 TRP TRP B . n B 2 48 LEU 48 48 48 LEU LEU B . n B 2 49 GLY 49 49 49 GLY GLY B . n B 2 50 MET 50 50 50 MET MET B . n B 2 51 ILE 51 51 51 ILE ILE B . n B 2 52 TRP 52 52 52 TRP TRP B . n B 2 53 GLY 53 53 53 GLY GLY B . n B 2 54 ASP 54 54 54 ASP ASP B . n B 2 55 GLY 55 55 55 GLY GLY B . n B 2 56 ASN 56 56 56 ASN ASN B . n B 2 57 THR 57 57 57 THR THR B . n B 2 58 ASP 58 58 58 ASP ASP B . n B 2 59 TYR 59 59 59 TYR TYR B . n B 2 60 ASN 60 60 60 ASN ASN B . n B 2 61 SER 61 61 61 SER SER B . n B 2 62 ALA 62 62 62 ALA ALA B . n B 2 63 LEU 63 63 63 LEU LEU B . n B 2 64 LYS 64 64 64 LYS LYS B . n B 2 65 SER 65 65 65 SER SER B . n B 2 66 ARG 66 66 66 ARG ARG B . n B 2 67 LEU 67 67 67 LEU LEU B . n B 2 68 SER 68 68 68 SER SER B . n B 2 69 ILE 69 69 69 ILE ILE B . n B 2 70 SER 70 70 70 SER SER B . n B 2 71 LYS 71 71 71 LYS LYS B . n B 2 72 ASP 72 72 72 ASP ASP B . n B 2 73 ASN 73 73 73 ASN ASN B . n B 2 74 SER 74 74 74 SER SER B . n B 2 75 LYS 75 75 75 LYS LYS B . n B 2 76 SER 76 76 76 SER SER B . n B 2 77 GLN 77 77 77 GLN GLN B . n B 2 78 VAL 78 78 78 VAL VAL B . n B 2 79 PHE 79 79 79 PHE PHE B . n B 2 80 LEU 80 80 80 LEU LEU B . n B 2 81 LYS 81 81 81 LYS LYS B . n B 2 82 MET 82 82 82 MET MET B . n B 2 83 ASN 83 83 83 ASN ASN B . n B 2 84 SER 84 84 84 SER SER B . n B 2 85 LEU 85 85 85 LEU LEU B . n B 2 86 HIS 86 86 86 HIS HIS B . n B 2 87 THR 87 87 87 THR THR B . n B 2 88 ASP 88 88 88 ASP ASP B . n B 2 89 ASP 89 89 89 ASP ASP B . n B 2 90 THR 90 90 90 THR THR B . n B 2 91 ALA 91 91 91 ALA ALA B . n B 2 92 ARG 92 92 92 ARG ARG B . n B 2 93 TYR 93 93 93 TYR TYR B . n B 2 94 TYR 94 94 94 TYR TYR B . n B 2 95 CYS 95 95 95 CYS CYS B . n B 2 96 ALA 96 96 96 ALA ALA B . n B 2 97 ARG 97 97 97 ARG ARG B . n B 2 98 GLU 98 98 98 GLU GLU B . n B 2 99 ARG 99 99 99 ARG ARG B . n B 2 100 ASP 100 100 100 ASP ASP B . n B 2 101 TYR 101 101 101 TYR TYR B . n B 2 102 ARG 102 102 102 ARG ARG B . n B 2 103 LEU 103 103 103 LEU LEU B . n B 2 104 ASP 104 104 104 ASP ASP B . n B 2 105 TYR 105 105 105 TYR TYR B . n B 2 106 TRP 106 106 106 TRP TRP B . n B 2 107 GLY 107 107 107 GLY GLY B . n B 2 108 GLN 108 108 108 GLN GLN B . n B 2 109 GLY 109 109 109 GLY GLY B . n B 2 110 THR 110 110 110 THR THR B . n B 2 111 THR 111 111 111 THR THR B . n B 2 112 LEU 112 112 112 LEU LEU B . n B 2 113 THR 113 113 113 THR THR B . n B 2 114 VAL 114 114 114 VAL VAL B . n B 2 115 SER 115 115 115 SER SER B . n B 2 116 SER 116 116 116 SER SER B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 731 731 HOH HOH A . C 3 HOH 2 733 733 HOH HOH A . C 3 HOH 3 736 736 HOH HOH A . C 3 HOH 4 742 742 HOH HOH A . C 3 HOH 5 743 743 HOH HOH A . C 3 HOH 6 746 746 HOH HOH A . C 3 HOH 7 764 764 HOH HOH A . C 3 HOH 8 801 801 HOH HOH A . C 3 HOH 9 855 855 HOH HOH A . C 3 HOH 10 887 887 HOH HOH A . D 3 HOH 1 738 738 HOH HOH B . D 3 HOH 2 748 748 HOH HOH B . D 3 HOH 3 749 749 HOH HOH B . D 3 HOH 4 765 765 HOH HOH B . D 3 HOH 5 767 767 HOH HOH B . D 3 HOH 6 785 785 HOH HOH B . D 3 HOH 7 800 800 HOH HOH B . D 3 HOH 8 830 830 HOH HOH B . D 3 HOH 9 872 872 HOH HOH B . D 3 HOH 10 878 878 HOH HOH B . D 3 HOH 11 889 889 HOH HOH B . D 3 HOH 12 898 898 HOH HOH B . D 3 HOH 13 908 908 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1610 ? 1 MORE -10 ? 1 'SSA (A^2)' 10100 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-05-31 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 X-PLOR phasing . ? 3 # _pdbx_entry_details.entry_id 1VFA _pdbx_entry_details.compound_details ;THE ANTIBODY IS SECRETED INTO PERIPLASMIC SPACE. VH AND VL DOMAINS ARE COVALENTLY LINKED AND THEY ASSOCIATE SPONTANEOUSLY. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 NE2 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 HIS _pdbx_validate_rmsd_bond.auth_seq_id_1 90 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 HIS _pdbx_validate_rmsd_bond.auth_seq_id_2 90 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.292 _pdbx_validate_rmsd_bond.bond_target_value 1.373 _pdbx_validate_rmsd_bond.bond_deviation -0.081 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CD1 A TRP 35 ? ? CG A TRP 35 ? ? CD2 A TRP 35 ? ? 112.71 106.30 6.41 0.80 N 2 1 CE2 A TRP 35 ? ? CD2 A TRP 35 ? ? CG A TRP 35 ? ? 102.20 107.30 -5.10 0.80 N 3 1 CD1 A TRP 92 ? ? CG A TRP 92 ? ? CD2 A TRP 92 ? ? 111.97 106.30 5.67 0.80 N 4 1 CE2 A TRP 92 ? ? CD2 A TRP 92 ? ? CG A TRP 92 ? ? 101.94 107.30 -5.36 0.80 N 5 1 CD1 B TRP 36 ? ? CG B TRP 36 ? ? CD2 B TRP 36 ? ? 112.36 106.30 6.06 0.80 N 6 1 CE2 B TRP 36 ? ? CD2 B TRP 36 ? ? CG B TRP 36 ? ? 101.96 107.30 -5.34 0.80 N 7 1 CD1 B TRP 47 ? ? CG B TRP 47 ? ? CD2 B TRP 47 ? ? 112.55 106.30 6.25 0.80 N 8 1 CE2 B TRP 47 ? ? CD2 B TRP 47 ? ? CG B TRP 47 ? ? 101.85 107.30 -5.45 0.80 N 9 1 CD1 B TRP 52 ? ? CG B TRP 52 ? ? CD2 B TRP 52 ? ? 112.68 106.30 6.38 0.80 N 10 1 CE2 B TRP 52 ? ? CD2 B TRP 52 ? ? CG B TRP 52 ? ? 101.65 107.30 -5.65 0.80 N 11 1 NE B ARG 66 ? ? CZ B ARG 66 ? ? NH1 B ARG 66 ? ? 123.50 120.30 3.20 0.50 N 12 1 NE B ARG 66 ? ? CZ B ARG 66 ? ? NH2 B ARG 66 ? ? 115.22 120.30 -5.08 0.50 N 13 1 CD1 B TRP 106 ? ? CG B TRP 106 ? ? CD2 B TRP 106 ? ? 111.72 106.30 5.42 0.80 N 14 1 CE2 B TRP 106 ? ? CD2 B TRP 106 ? ? CG B TRP 106 ? ? 101.97 107.30 -5.33 0.80 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 50 ? ? 37.87 57.48 2 1 THR A 51 ? ? 65.15 -51.67 3 1 SER A 93 ? ? 57.40 -148.90 4 1 SER B 15 ? ? 68.72 -6.22 5 1 LYS B 64 ? ? -37.85 -39.26 6 1 ASP B 100 ? ? 39.86 63.04 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #