data_1VGC # _entry.id 1VGC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VGC pdb_00001vgc 10.2210/pdb1vgc/pdb WWPDB D_1000177031 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VGC _pdbx_database_status.recvd_initial_deposition_date 1997-05-01 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stoll, V.S.' 1 'Eger, B.T.' 2 'Hynes, R.C.' 3 'Martichonok, V.' 4 'Jones, J.B.' 5 'Pai, E.F.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Differences in binding modes of enantiomers of 1-acetamido boronic acid based protease inhibitors: crystal structures of gamma-chymotrypsin and subtilisin Carlsberg complexes. ; Biochemistry 37 451 462 1998 BICHAW US 0006-2960 0033 ? 9425066 10.1021/bi971166o 1 ;Probing the Specificity of the Serine Proteases Subtilisin Carlsberg and A-Chymotrypsin with Enantiomeric 1-Acetamido Boronic Acids. An Unexpected Reversal of the Normal ; J.Am.Chem.Soc. 118 95 ? 1996 JACSAT US 0002-7863 0004 ? ? ? 2 'Probing the Specificity of the S1 Binding Site of Subtilisin Carlsberg with Boronic Acids' Bioorg.Med.Chem. 2 35 ? 1994 BMECEP UK 0968-0896 1200 ? ? ? 3 'Gamma-Chymotrypsin is a Complex of Alpha-Chymotrypsin with its Own Autolysis Products' Biochemistry 30 5217 ? 1991 BICHAW US 0006-2960 0033 ? ? ? 4 'Structure and Activity of Two Photoreversible Cinnamates Bound to Chymotrypsin' Biochemistry 29 4871 ? 1990 BICHAW US 0006-2960 0033 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stoll, V.S.' 1 ? primary 'Eger, B.T.' 2 ? primary 'Hynes, R.C.' 3 ? primary 'Martichonok, V.' 4 ? primary 'Jones, J.B.' 5 ? primary 'Pai, E.F.' 6 ? 1 'Martichonok, V.' 7 ? 1 'Jones, J.B.' 8 ? 2 'Seufer-Wasserthal, P.' 9 ? 2 'Martichonok, V.' 10 ? 2 'Keller, T.H.' 11 ? 2 'Chin, B.' 12 ? 2 'Martin, R.' 13 ? 2 'Jones, J.B.' 14 ? 3 'Harel, M.' 15 ? 3 'Su, C.T.' 16 ? 3 'Frolow, F.' 17 ? 3 'Silman, I.' 18 ? 3 'Sussman, J.L.' 19 ? 4 'Stoddard, B.L.' 20 ? 4 'Bruhnke, J.' 21 ? 4 'Porter, N.' 22 ? 4 'Ringe, D.' 23 ? 4 'Petsko, G.A.' 24 ? # _cell.entry_id 1VGC _cell.length_a 69.860 _cell.length_b 69.860 _cell.length_c 97.150 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VGC _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'GAMMA CHYMOTRYPSIN' 1253.511 1 3.4.21.1 ? ? ;A-CHYMOTRYPSIN PURCHASED FROM SIGMA AND CONVERTED TO G-CHYMOTRYPSIN BY THE METHOD OF STODDARD ET AL., 1990, BIOCHEMISTRY, VOL. 29, P. 4871-4879 ; 2 polymer nat 'GAMMA CHYMOTRYPSIN' 13934.556 1 3.4.21.1 ? ? ;A-CHYMOTRYPSIN PURCHASED FROM SIGMA AND CONVERTED TO G-CHYMOTRYPSIN BY THE METHOD OF STODDARD ET AL., 1990, BIOCHEMISTRY, VOL. 29, P. 4871-4879 ; 3 polymer nat 'GAMMA CHYMOTRYPSIN' 10074.495 1 3.4.21.1 ? ? ;A-CHYMOTRYPSIN PURCHASED FROM SIGMA AND CONVERTED TO G-CHYMOTRYPSIN BY THE METHOD OF STODDARD ET AL., 1990, BIOCHEMISTRY, VOL. 29, P. 4871-4879 ; 4 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 5 non-polymer syn 'L-1-(4-CHLOROPHENYL)-2-(ACETAMIDO)ETHANE BORONIC ACID' 258.486 1 ? ? ? ? 6 water nat water 18.015 94 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no CGVPAIQPVLSGL CGVPAIQPVLSGL A ? 2 'polypeptide(L)' no no ;IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYN SLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY ; ;IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYN SLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY ; B ? 3 'polypeptide(L)' no no ;ANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVY ARVTALVNWVQQTLAAN ; ;ANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVY ARVTALVNWVQQTLAAN ; C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 GLY n 1 3 VAL n 1 4 PRO n 1 5 ALA n 1 6 ILE n 1 7 GLN n 1 8 PRO n 1 9 VAL n 1 10 LEU n 1 11 SER n 1 12 GLY n 1 13 LEU n 2 1 ILE n 2 2 VAL n 2 3 ASN n 2 4 GLY n 2 5 GLU n 2 6 GLU n 2 7 ALA n 2 8 VAL n 2 9 PRO n 2 10 GLY n 2 11 SER n 2 12 TRP n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 SER n 2 18 LEU n 2 19 GLN n 2 20 ASP n 2 21 LYS n 2 22 THR n 2 23 GLY n 2 24 PHE n 2 25 HIS n 2 26 PHE n 2 27 CYS n 2 28 GLY n 2 29 GLY n 2 30 SER n 2 31 LEU n 2 32 ILE n 2 33 ASN n 2 34 GLU n 2 35 ASN n 2 36 TRP n 2 37 VAL n 2 38 VAL n 2 39 THR n 2 40 ALA n 2 41 ALA n 2 42 HIS n 2 43 CYS n 2 44 GLY n 2 45 VAL n 2 46 THR n 2 47 THR n 2 48 SER n 2 49 ASP n 2 50 VAL n 2 51 VAL n 2 52 VAL n 2 53 ALA n 2 54 GLY n 2 55 GLU n 2 56 PHE n 2 57 ASP n 2 58 GLN n 2 59 GLY n 2 60 SER n 2 61 SER n 2 62 SER n 2 63 GLU n 2 64 LYS n 2 65 ILE n 2 66 GLN n 2 67 LYS n 2 68 LEU n 2 69 LYS n 2 70 ILE n 2 71 ALA n 2 72 LYS n 2 73 VAL n 2 74 PHE n 2 75 LYS n 2 76 ASN n 2 77 SER n 2 78 LYS n 2 79 TYR n 2 80 ASN n 2 81 SER n 2 82 LEU n 2 83 THR n 2 84 ILE n 2 85 ASN n 2 86 ASN n 2 87 ASP n 2 88 ILE n 2 89 THR n 2 90 LEU n 2 91 LEU n 2 92 LYS n 2 93 LEU n 2 94 SER n 2 95 THR n 2 96 ALA n 2 97 ALA n 2 98 SER n 2 99 PHE n 2 100 SER n 2 101 GLN n 2 102 THR n 2 103 VAL n 2 104 SER n 2 105 ALA n 2 106 VAL n 2 107 CYS n 2 108 LEU n 2 109 PRO n 2 110 SER n 2 111 ALA n 2 112 SER n 2 113 ASP n 2 114 ASP n 2 115 PHE n 2 116 ALA n 2 117 ALA n 2 118 GLY n 2 119 THR n 2 120 THR n 2 121 CYS n 2 122 VAL n 2 123 THR n 2 124 THR n 2 125 GLY n 2 126 TRP n 2 127 GLY n 2 128 LEU n 2 129 THR n 2 130 ARG n 2 131 TYR n 3 1 ALA n 3 2 ASN n 3 3 THR n 3 4 PRO n 3 5 ASP n 3 6 ARG n 3 7 LEU n 3 8 GLN n 3 9 GLN n 3 10 ALA n 3 11 SER n 3 12 LEU n 3 13 PRO n 3 14 LEU n 3 15 LEU n 3 16 SER n 3 17 ASN n 3 18 THR n 3 19 ASN n 3 20 CYS n 3 21 LYS n 3 22 LYS n 3 23 TYR n 3 24 TRP n 3 25 GLY n 3 26 THR n 3 27 LYS n 3 28 ILE n 3 29 LYS n 3 30 ASP n 3 31 ALA n 3 32 MET n 3 33 ILE n 3 34 CYS n 3 35 ALA n 3 36 GLY n 3 37 ALA n 3 38 SER n 3 39 GLY n 3 40 VAL n 3 41 SER n 3 42 SER n 3 43 CYS n 3 44 MET n 3 45 GLY n 3 46 ASP n 3 47 SER n 3 48 GLY n 3 49 GLY n 3 50 PRO n 3 51 LEU n 3 52 VAL n 3 53 CYS n 3 54 LYS n 3 55 LYS n 3 56 ASN n 3 57 GLY n 3 58 ALA n 3 59 TRP n 3 60 THR n 3 61 LEU n 3 62 VAL n 3 63 GLY n 3 64 ILE n 3 65 VAL n 3 66 SER n 3 67 TRP n 3 68 GLY n 3 69 SER n 3 70 SER n 3 71 THR n 3 72 CYS n 3 73 SER n 3 74 THR n 3 75 SER n 3 76 THR n 3 77 PRO n 3 78 GLY n 3 79 VAL n 3 80 TYR n 3 81 ALA n 3 82 ARG n 3 83 VAL n 3 84 THR n 3 85 ALA n 3 86 LEU n 3 87 VAL n 3 88 ASN n 3 89 TRP n 3 90 VAL n 3 91 GLN n 3 92 GLN n 3 93 THR n 3 94 LEU n 3 95 ALA n 3 96 ALA n 3 97 ASN n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? cattle 'Bos taurus' 9913 Bos ? ? ? ? ? ? ? ? ? ? PANCREAS ? ? ? ? ? 2 1 sample ? ? cattle 'Bos taurus' 9913 Bos ? ? ? ? ? ? ? ? ? ? PANCREAS ? ? ? ? ? 3 1 sample ? ? cattle 'Bos taurus' 9913 Bos ? ? ? ? ? ? ? ? ? ? PANCREAS ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP CTRA_BOVIN P00766 1 1 ? ? 2 UNP CTRA_BOVIN P00766 2 16 ? ? 3 UNP CTRA_BOVIN P00766 3 149 ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VGC A 1 ? 13 ? P00766 1 ? 13 ? 1 13 2 2 1VGC B 1 ? 131 ? P00766 16 ? 146 ? 16 146 3 3 1VGC C 1 ? 97 ? P00766 149 ? 245 ? 149 245 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 V36 non-polymer . 'L-1-(4-CHLOROPHENYL)-2-(ACETAMIDO)ETHANE BORONIC ACID' 'L-PARA-CHLORO-1-ACETAMIDO BORONIC ACID' 'C10 H14 B Cl N O4 -1' 258.486 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1VGC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_percent_sol 48. _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'in scintillation vials' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PROTEIN WAS CRYSTALLIZED IN SCINTILLATION VIALS IN 65% AMMONIUM SULFATE, 100 MM CACODYLATE, PH 6.5, in scintillation vials' # _diffrn.id 1 _diffrn.ambient_temp 287 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date 1995-11 _diffrn_detector.details 'FRANKS MIRRORS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1VGC _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 10.0 _reflns.d_resolution_high 1.90 _reflns.number_obs 21972 _reflns.number_all ? _reflns.percent_possible_obs 75.29 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rsym_value 0.068 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.72 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.99 _reflns_shell.percent_possible_all 42.74 _reflns_shell.Rmerge_I_obs 0.366 _reflns_shell.pdbx_Rsym_value 0.366 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1VGC _refine.ls_number_reflns_obs 16276 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.0 _refine.pdbx_data_cutoff_high_absF 100000. _refine.pdbx_data_cutoff_low_absF 0.1 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.0 _refine.ls_d_res_high 1.9 _refine.ls_percent_reflns_obs 75.29 _refine.ls_R_factor_obs 0.1959 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1959 _refine.ls_R_factor_R_free 0.25 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.4 _refine.ls_number_reflns_R_free 1644 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3GCH' _refine.pdbx_method_to_determine_struct 'DIRECT SOLUTION WITH KNOWN STRUCTURE' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1VGC _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 10.0 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2446 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 88 _refine_hist.number_atoms_total 2560 _refine_hist.d_res_high 1.9 _refine_hist.d_res_low 10.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.677 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 26.48 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 2.633 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.99 _refine_ls_shell.number_reflns_R_work 1014 _refine_ls_shell.R_factor_R_work 0.318 _refine_ls_shell.percent_reflns_obs 42.7 _refine_ls_shell.R_factor_R_free 0.317 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 4.9 _refine_ls_shell.number_reflns_R_free 116 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDXV36.PRO TOPHCSDXV36.PRO 'X-RAY DIFFRACTION' 2 PARAM19.SOL TOPH19.PEP 'X-RAY DIFFRACTION' 3 PAR.SUL TOP.SUL 'X-RAY DIFFRACTION' 4 ? TOPH19.SOL 'X-RAY DIFFRACTION' # _struct.entry_id 1VGC _struct.title 'GAMMA-CHYMOTRYPSIN L-PARA-CHLORO-1-ACETAMIDO BORONIC ACID INHIBITOR COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VGC _struct_keywords.pdbx_keywords 'SERINE PROTEASE' _struct_keywords.text 'HYDROLASE, SERINE PROTEASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 6 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id H1 _struct_conf.beg_label_comp_id VAL _struct_conf.beg_label_asym_id C _struct_conf.beg_label_seq_id 83 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ASN _struct_conf.end_label_asym_id C _struct_conf.end_label_seq_id 97 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id VAL _struct_conf.beg_auth_asym_id C _struct_conf.beg_auth_seq_id 231 _struct_conf.end_auth_comp_id ASN _struct_conf.end_auth_asym_id C _struct_conf.end_auth_seq_id 245 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 1 SG ? ? ? 1_555 B CYS 107 SG ? ? A CYS 1 B CYS 122 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf2 disulf ? ? B CYS 27 SG ? ? ? 1_555 B CYS 43 SG ? ? B CYS 42 B CYS 58 1_555 ? ? ? ? ? ? ? 2.193 ? ? disulf3 disulf ? ? B CYS 121 SG ? ? ? 1_555 C CYS 53 SG ? ? B CYS 136 C CYS 201 1_555 ? ? ? ? ? ? ? 2.214 ? ? disulf4 disulf ? ? C CYS 20 SG ? ? ? 1_555 C CYS 34 SG ? ? C CYS 168 C CYS 182 1_555 ? ? ? ? ? ? ? 2.209 ? ? disulf5 disulf ? ? C CYS 43 SG ? ? ? 1_555 C CYS 72 SG ? ? C CYS 191 C CYS 220 1_555 ? ? ? ? ? ? ? 2.240 ? ? covale1 covale one ? C SER 47 OG ? ? ? 1_555 F V36 . B ? ? C SER 195 C V36 358 1_555 ? ? ? ? ? ? ? 1.361 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details S1 ? 7 ? S2 ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense S1 1 2 ? anti-parallel S1 2 3 ? anti-parallel S1 3 4 ? anti-parallel S1 4 5 ? anti-parallel S1 5 6 ? anti-parallel S1 6 7 ? anti-parallel S2 1 2 ? anti-parallel S2 2 3 ? anti-parallel S2 3 4 ? anti-parallel S2 4 5 ? anti-parallel S2 5 6 ? anti-parallel S2 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id S1 1 PRO B 13 ? ASP B 20 ? PRO B 28 ASP B 35 S1 2 CYS B 27 ? GLU B 34 ? CYS B 42 GLU B 49 S1 3 ASN B 35 ? ALA B 41 ? ASN B 50 ALA B 56 S1 4 ASN B 86 ? THR B 95 ? ASN B 101 THR B 110 S1 5 GLN B 66 ? SER B 77 ? GLN B 81 SER B 92 S1 6 SER B 48 ? GLY B 54 ? SER B 63 GLY B 69 S1 7 PRO B 13 ? ASP B 20 ? PRO B 28 ASP B 35 S2 1 GLY B 118 ? TRP B 126 ? GLY B 133 TRP B 141 S2 2 LEU C 7 ? LEU C 14 ? LEU C 155 LEU C 162 S2 3 ALA C 31 ? SER C 38 ? ALA C 179 SER C 186 S2 4 SER C 75 ? ALA C 81 ? SER C 223 ALA C 229 S2 5 ILE C 64 ? SER C 70 ? ILE C 212 SER C 218 S2 6 GLY C 45 ? CYS C 53 ? GLY C 193 CYS C 201 S2 7 GLY B 118 ? TRP B 126 ? GLY B 133 TRP B 141 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details CAT Unknown ? ? ? ? 4 'THE CATALYTIC SITE WHICH INCLUDES THE MODIFIED SERINE THAT HAS THE BORONIC ACID INHIBITOR COVALENTLY ATTACHED.' AC1 Software C SO4 357 ? 4 'BINDING SITE FOR RESIDUE SO4 C 357' AC2 Software B SO4 358 ? 3 'BINDING SITE FOR RESIDUE SO4 B 358' AC3 Software C V36 358 ? 16 'BINDING SITE FOR RESIDUE V36 C 358' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 CAT 4 HIS B 42 ? HIS B 57 . ? 1_555 ? 2 CAT 4 ASP B 87 ? ASP B 102 . ? 1_555 ? 3 CAT 4 SER C 47 ? SER C 195 . ? 1_555 ? 4 CAT 4 V36 F . ? V36 C 358 . ? 1_555 ? 5 AC1 4 GLU B 6 ? GLU B 21 . ? 1_555 ? 6 AC1 4 ASP C 5 ? ASP C 153 . ? 1_555 ? 7 AC1 4 ARG C 6 ? ARG C 154 . ? 1_555 ? 8 AC1 4 GLN C 8 ? GLN C 156 . ? 1_555 ? 9 AC2 3 LYS B 21 ? LYS B 36 . ? 2_655 ? 10 AC2 3 SER B 77 ? SER B 92 . ? 1_555 ? 11 AC2 3 TRP C 89 ? TRP C 237 . ? 1_555 ? 12 AC3 16 HIS B 42 ? HIS B 57 . ? 1_555 ? 13 AC3 16 SER C 41 ? SER C 189 . ? 1_555 ? 14 AC3 16 SER C 42 ? SER C 190 . ? 1_555 ? 15 AC3 16 CYS C 43 ? CYS C 191 . ? 1_555 ? 16 AC3 16 MET C 44 ? MET C 192 . ? 1_555 ? 17 AC3 16 GLY C 45 ? GLY C 193 . ? 1_555 ? 18 AC3 16 ASP C 46 ? ASP C 194 . ? 1_555 ? 19 AC3 16 SER C 47 ? SER C 195 . ? 1_555 ? 20 AC3 16 VAL C 65 ? VAL C 213 . ? 1_555 ? 21 AC3 16 SER C 66 ? SER C 214 . ? 1_555 ? 22 AC3 16 TRP C 67 ? TRP C 215 . ? 1_555 ? 23 AC3 16 GLY C 68 ? GLY C 216 . ? 1_555 ? 24 AC3 16 SER C 69 ? SER C 217 . ? 1_555 ? 25 AC3 16 HOH I . ? HOH C 332 . ? 1_555 ? 26 AC3 16 HOH I . ? HOH C 334 . ? 1_555 ? 27 AC3 16 HOH I . ? HOH C 338 . ? 1_555 ? # _database_PDB_matrix.entry_id 1VGC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1VGC _atom_sites.fract_transf_matrix[1][1] 0.014314 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014314 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010293 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol B C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 1 1 CYS CYS A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 SER 11 11 ? ? ? A . n A 1 12 GLY 12 12 ? ? ? A . n A 1 13 LEU 13 13 ? ? ? A . n B 2 1 ILE 1 16 16 ILE ILE B . n B 2 2 VAL 2 17 17 VAL VAL B . n B 2 3 ASN 3 18 18 ASN ASN B . n B 2 4 GLY 4 19 19 GLY GLY B . n B 2 5 GLU 5 20 20 GLU GLU B . n B 2 6 GLU 6 21 21 GLU GLU B . n B 2 7 ALA 7 22 22 ALA ALA B . n B 2 8 VAL 8 23 23 VAL VAL B . n B 2 9 PRO 9 24 24 PRO PRO B . n B 2 10 GLY 10 25 25 GLY GLY B . n B 2 11 SER 11 26 26 SER SER B . n B 2 12 TRP 12 27 27 TRP TRP B . n B 2 13 PRO 13 28 28 PRO PRO B . n B 2 14 TRP 14 29 29 TRP TRP B . n B 2 15 GLN 15 30 30 GLN GLN B . n B 2 16 VAL 16 31 31 VAL VAL B . n B 2 17 SER 17 32 32 SER SER B . n B 2 18 LEU 18 33 33 LEU LEU B . n B 2 19 GLN 19 34 34 GLN GLN B . n B 2 20 ASP 20 35 35 ASP ASP B . n B 2 21 LYS 21 36 36 LYS LYS B . n B 2 22 THR 22 37 37 THR THR B . n B 2 23 GLY 23 38 38 GLY GLY B . n B 2 24 PHE 24 39 39 PHE PHE B . n B 2 25 HIS 25 40 40 HIS HIS B . n B 2 26 PHE 26 41 41 PHE PHE B . n B 2 27 CYS 27 42 42 CYS CYS B . n B 2 28 GLY 28 43 43 GLY GLY B . n B 2 29 GLY 29 44 44 GLY GLY B . n B 2 30 SER 30 45 45 SER SER B . n B 2 31 LEU 31 46 46 LEU LEU B . n B 2 32 ILE 32 47 47 ILE ILE B . n B 2 33 ASN 33 48 48 ASN ASN B . n B 2 34 GLU 34 49 49 GLU GLU B . n B 2 35 ASN 35 50 50 ASN ASN B . n B 2 36 TRP 36 51 51 TRP TRP B . n B 2 37 VAL 37 52 52 VAL VAL B . n B 2 38 VAL 38 53 53 VAL VAL B . n B 2 39 THR 39 54 54 THR THR B . n B 2 40 ALA 40 55 55 ALA ALA B . n B 2 41 ALA 41 56 56 ALA ALA B . n B 2 42 HIS 42 57 57 HIS HIS B . n B 2 43 CYS 43 58 58 CYS CYS B . n B 2 44 GLY 44 59 59 GLY GLY B . n B 2 45 VAL 45 60 60 VAL VAL B . n B 2 46 THR 46 61 61 THR THR B . n B 2 47 THR 47 62 62 THR THR B . n B 2 48 SER 48 63 63 SER SER B . n B 2 49 ASP 49 64 64 ASP ASP B . n B 2 50 VAL 50 65 65 VAL VAL B . n B 2 51 VAL 51 66 66 VAL VAL B . n B 2 52 VAL 52 67 67 VAL VAL B . n B 2 53 ALA 53 68 68 ALA ALA B . n B 2 54 GLY 54 69 69 GLY GLY B . n B 2 55 GLU 55 70 70 GLU GLU B . n B 2 56 PHE 56 71 71 PHE PHE B . n B 2 57 ASP 57 72 72 ASP ASP B . n B 2 58 GLN 58 73 73 GLN GLN B . n B 2 59 GLY 59 74 74 GLY GLY B . n B 2 60 SER 60 75 75 SER SER B . n B 2 61 SER 61 76 76 SER SER B . n B 2 62 SER 62 77 77 SER SER B . n B 2 63 GLU 63 78 78 GLU GLU B . n B 2 64 LYS 64 79 79 LYS LYS B . n B 2 65 ILE 65 80 80 ILE ILE B . n B 2 66 GLN 66 81 81 GLN GLN B . n B 2 67 LYS 67 82 82 LYS LYS B . n B 2 68 LEU 68 83 83 LEU LEU B . n B 2 69 LYS 69 84 84 LYS LYS B . n B 2 70 ILE 70 85 85 ILE ILE B . n B 2 71 ALA 71 86 86 ALA ALA B . n B 2 72 LYS 72 87 87 LYS LYS B . n B 2 73 VAL 73 88 88 VAL VAL B . n B 2 74 PHE 74 89 89 PHE PHE B . n B 2 75 LYS 75 90 90 LYS LYS B . n B 2 76 ASN 76 91 91 ASN ASN B . n B 2 77 SER 77 92 92 SER SER B . n B 2 78 LYS 78 93 93 LYS LYS B . n B 2 79 TYR 79 94 94 TYR TYR B . n B 2 80 ASN 80 95 95 ASN ASN B . n B 2 81 SER 81 96 96 SER SER B . n B 2 82 LEU 82 97 97 LEU LEU B . n B 2 83 THR 83 98 98 THR THR B . n B 2 84 ILE 84 99 99 ILE ILE B . n B 2 85 ASN 85 100 100 ASN ASN B . n B 2 86 ASN 86 101 101 ASN ASN B . n B 2 87 ASP 87 102 102 ASP ASP B . n B 2 88 ILE 88 103 103 ILE ILE B . n B 2 89 THR 89 104 104 THR THR B . n B 2 90 LEU 90 105 105 LEU LEU B . n B 2 91 LEU 91 106 106 LEU LEU B . n B 2 92 LYS 92 107 107 LYS LYS B . n B 2 93 LEU 93 108 108 LEU LEU B . n B 2 94 SER 94 109 109 SER SER B . n B 2 95 THR 95 110 110 THR THR B . n B 2 96 ALA 96 111 111 ALA ALA B . n B 2 97 ALA 97 112 112 ALA ALA B . n B 2 98 SER 98 113 113 SER SER B . n B 2 99 PHE 99 114 114 PHE PHE B . n B 2 100 SER 100 115 115 SER SER B . n B 2 101 GLN 101 116 116 GLN GLN B . n B 2 102 THR 102 117 117 THR THR B . n B 2 103 VAL 103 118 118 VAL VAL B . n B 2 104 SER 104 119 119 SER SER B . n B 2 105 ALA 105 120 120 ALA ALA B . n B 2 106 VAL 106 121 121 VAL VAL B . n B 2 107 CYS 107 122 122 CYS CYS B . n B 2 108 LEU 108 123 123 LEU LEU B . n B 2 109 PRO 109 124 124 PRO PRO B . n B 2 110 SER 110 125 125 SER SER B . n B 2 111 ALA 111 126 126 ALA ALA B . n B 2 112 SER 112 127 127 SER SER B . n B 2 113 ASP 113 128 128 ASP ASP B . n B 2 114 ASP 114 129 129 ASP ASP B . n B 2 115 PHE 115 130 130 PHE PHE B . n B 2 116 ALA 116 131 131 ALA ALA B . n B 2 117 ALA 117 132 132 ALA ALA B . n B 2 118 GLY 118 133 133 GLY GLY B . n B 2 119 THR 119 134 134 THR THR B . n B 2 120 THR 120 135 135 THR THR B . n B 2 121 CYS 121 136 136 CYS CYS B . n B 2 122 VAL 122 137 137 VAL VAL B . n B 2 123 THR 123 138 138 THR THR B . n B 2 124 THR 124 139 139 THR THR B . n B 2 125 GLY 125 140 140 GLY GLY B . n B 2 126 TRP 126 141 141 TRP TRP B . n B 2 127 GLY 127 142 142 GLY GLY B . n B 2 128 LEU 128 143 143 LEU LEU B . n B 2 129 THR 129 144 144 THR THR B . n B 2 130 ARG 130 145 145 ARG ARG B . n B 2 131 TYR 131 146 146 TYR TYR B . n C 3 1 ALA 1 149 ? ? ? C . n C 3 2 ASN 2 150 ? ? ? C . n C 3 3 THR 3 151 151 THR THR C . n C 3 4 PRO 4 152 152 PRO PRO C . n C 3 5 ASP 5 153 153 ASP ASP C . n C 3 6 ARG 6 154 154 ARG ARG C . n C 3 7 LEU 7 155 155 LEU LEU C . n C 3 8 GLN 8 156 156 GLN GLN C . n C 3 9 GLN 9 157 157 GLN GLN C . n C 3 10 ALA 10 158 158 ALA ALA C . n C 3 11 SER 11 159 159 SER SER C . n C 3 12 LEU 12 160 160 LEU LEU C . n C 3 13 PRO 13 161 161 PRO PRO C . n C 3 14 LEU 14 162 162 LEU LEU C . n C 3 15 LEU 15 163 163 LEU LEU C . n C 3 16 SER 16 164 164 SER SER C . n C 3 17 ASN 17 165 165 ASN ASN C . n C 3 18 THR 18 166 166 THR THR C . n C 3 19 ASN 19 167 167 ASN ASN C . n C 3 20 CYS 20 168 168 CYS CYS C . n C 3 21 LYS 21 169 169 LYS LYS C . n C 3 22 LYS 22 170 170 LYS LYS C . n C 3 23 TYR 23 171 171 TYR TYR C . n C 3 24 TRP 24 172 172 TRP TRP C . n C 3 25 GLY 25 173 173 GLY GLY C . n C 3 26 THR 26 174 174 THR THR C . n C 3 27 LYS 27 175 175 LYS LYS C . n C 3 28 ILE 28 176 176 ILE ILE C . n C 3 29 LYS 29 177 177 LYS LYS C . n C 3 30 ASP 30 178 178 ASP ASP C . n C 3 31 ALA 31 179 179 ALA ALA C . n C 3 32 MET 32 180 180 MET MET C . n C 3 33 ILE 33 181 181 ILE ILE C . n C 3 34 CYS 34 182 182 CYS CYS C . n C 3 35 ALA 35 183 183 ALA ALA C . n C 3 36 GLY 36 184 184 GLY GLY C . n C 3 37 ALA 37 185 185 ALA ALA C . n C 3 38 SER 38 186 186 SER SER C . n C 3 39 GLY 39 187 187 GLY GLY C . n C 3 40 VAL 40 188 188 VAL VAL C . n C 3 41 SER 41 189 189 SER SER C . n C 3 42 SER 42 190 190 SER SER C . n C 3 43 CYS 43 191 191 CYS CYS C . n C 3 44 MET 44 192 192 MET MET C . n C 3 45 GLY 45 193 193 GLY GLY C . n C 3 46 ASP 46 194 194 ASP ASP C . n C 3 47 SER 47 195 195 SER SER C . n C 3 48 GLY 48 196 196 GLY GLY C . n C 3 49 GLY 49 197 197 GLY GLY C . n C 3 50 PRO 50 198 198 PRO PRO C . n C 3 51 LEU 51 199 199 LEU LEU C . n C 3 52 VAL 52 200 200 VAL VAL C . n C 3 53 CYS 53 201 201 CYS CYS C . n C 3 54 LYS 54 202 202 LYS LYS C . n C 3 55 LYS 55 203 203 LYS LYS C . n C 3 56 ASN 56 204 204 ASN ASN C . n C 3 57 GLY 57 205 205 GLY GLY C . n C 3 58 ALA 58 206 206 ALA ALA C . n C 3 59 TRP 59 207 207 TRP TRP C . n C 3 60 THR 60 208 208 THR THR C . n C 3 61 LEU 61 209 209 LEU LEU C . n C 3 62 VAL 62 210 210 VAL VAL C . n C 3 63 GLY 63 211 211 GLY GLY C . n C 3 64 ILE 64 212 212 ILE ILE C . n C 3 65 VAL 65 213 213 VAL VAL C . n C 3 66 SER 66 214 214 SER SER C . n C 3 67 TRP 67 215 215 TRP TRP C . n C 3 68 GLY 68 216 216 GLY GLY C . n C 3 69 SER 69 217 217 SER SER C . n C 3 70 SER 70 218 218 SER SER C . n C 3 71 THR 71 219 219 THR THR C . n C 3 72 CYS 72 220 220 CYS CYS C . n C 3 73 SER 73 221 221 SER SER C . n C 3 74 THR 74 222 222 THR THR C . n C 3 75 SER 75 223 223 SER SER C . n C 3 76 THR 76 224 224 THR THR C . n C 3 77 PRO 77 225 225 PRO PRO C . n C 3 78 GLY 78 226 226 GLY GLY C . n C 3 79 VAL 79 227 227 VAL VAL C . n C 3 80 TYR 80 228 228 TYR TYR C . n C 3 81 ALA 81 229 229 ALA ALA C . n C 3 82 ARG 82 230 230 ARG ARG C . n C 3 83 VAL 83 231 231 VAL VAL C . n C 3 84 THR 84 232 232 THR THR C . n C 3 85 ALA 85 233 233 ALA ALA C . n C 3 86 LEU 86 234 234 LEU LEU C . n C 3 87 VAL 87 235 235 VAL VAL C . n C 3 88 ASN 88 236 236 ASN ASN C . n C 3 89 TRP 89 237 237 TRP TRP C . n C 3 90 VAL 90 238 238 VAL VAL C . n C 3 91 GLN 91 239 239 GLN GLN C . n C 3 92 GLN 92 240 240 GLN GLN C . n C 3 93 THR 93 241 241 THR THR C . n C 3 94 LEU 94 242 242 LEU LEU C . n C 3 95 ALA 95 243 243 ALA ALA C . n C 3 96 ALA 96 244 244 ALA ALA C . n C 3 97 ASN 97 245 245 ASN ASN C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 1 358 358 SO4 SO4 B . E 4 SO4 1 357 357 SO4 SO4 C . F 5 V36 1 358 195 V36 V36 C . G 6 HOH 1 246 246 HOH HOH A . G 6 HOH 2 286 286 HOH HOH A . G 6 HOH 3 289 289 HOH HOH A . G 6 HOH 4 300 300 HOH HOH A . G 6 HOH 5 336 336 HOH HOH A . G 6 HOH 6 342 342 HOH HOH A . H 6 HOH 1 247 247 HOH HOH B . H 6 HOH 2 248 248 HOH HOH B . H 6 HOH 3 251 251 HOH HOH B . H 6 HOH 4 255 255 HOH HOH B . H 6 HOH 5 257 257 HOH HOH B . H 6 HOH 6 260 260 HOH HOH B . H 6 HOH 7 261 261 HOH HOH B . H 6 HOH 8 262 262 HOH HOH B . H 6 HOH 9 263 263 HOH HOH B . H 6 HOH 10 265 265 HOH HOH B . H 6 HOH 11 266 266 HOH HOH B . H 6 HOH 12 268 268 HOH HOH B . H 6 HOH 13 273 273 HOH HOH B . H 6 HOH 14 276 276 HOH HOH B . H 6 HOH 15 277 277 HOH HOH B . H 6 HOH 16 279 279 HOH HOH B . H 6 HOH 17 280 280 HOH HOH B . H 6 HOH 18 282 282 HOH HOH B . H 6 HOH 19 283 283 HOH HOH B . H 6 HOH 20 285 285 HOH HOH B . H 6 HOH 21 287 287 HOH HOH B . H 6 HOH 22 288 288 HOH HOH B . H 6 HOH 23 294 294 HOH HOH B . H 6 HOH 24 295 295 HOH HOH B . H 6 HOH 25 296 296 HOH HOH B . H 6 HOH 26 297 297 HOH HOH B . H 6 HOH 27 298 298 HOH HOH B . H 6 HOH 28 299 299 HOH HOH B . H 6 HOH 29 301 301 HOH HOH B . H 6 HOH 30 302 302 HOH HOH B . H 6 HOH 31 303 303 HOH HOH B . H 6 HOH 32 304 304 HOH HOH B . H 6 HOH 33 306 306 HOH HOH B . H 6 HOH 34 307 307 HOH HOH B . H 6 HOH 35 310 310 HOH HOH B . H 6 HOH 36 314 314 HOH HOH B . H 6 HOH 37 315 315 HOH HOH B . H 6 HOH 38 322 322 HOH HOH B . H 6 HOH 39 323 323 HOH HOH B . H 6 HOH 40 324 324 HOH HOH B . H 6 HOH 41 329 329 HOH HOH B . H 6 HOH 42 335 335 HOH HOH B . H 6 HOH 43 337 337 HOH HOH B . H 6 HOH 44 346 346 HOH HOH B . H 6 HOH 45 352 352 HOH HOH B . H 6 HOH 46 355 355 HOH HOH B . I 6 HOH 1 249 249 HOH HOH C . I 6 HOH 2 250 250 HOH HOH C . I 6 HOH 3 252 252 HOH HOH C . I 6 HOH 4 253 253 HOH HOH C . I 6 HOH 5 256 256 HOH HOH C . I 6 HOH 6 258 258 HOH HOH C . I 6 HOH 7 259 259 HOH HOH C . I 6 HOH 8 264 264 HOH HOH C . I 6 HOH 9 267 267 HOH HOH C . I 6 HOH 10 269 269 HOH HOH C . I 6 HOH 11 270 270 HOH HOH C . I 6 HOH 12 271 271 HOH HOH C . I 6 HOH 13 272 272 HOH HOH C . I 6 HOH 14 274 274 HOH HOH C . I 6 HOH 15 275 275 HOH HOH C . I 6 HOH 16 278 278 HOH HOH C . I 6 HOH 17 281 281 HOH HOH C . I 6 HOH 18 284 284 HOH HOH C . I 6 HOH 19 290 290 HOH HOH C . I 6 HOH 20 291 291 HOH HOH C . I 6 HOH 21 292 292 HOH HOH C . I 6 HOH 22 293 293 HOH HOH C . I 6 HOH 23 305 305 HOH HOH C . I 6 HOH 24 308 308 HOH HOH C . I 6 HOH 25 309 309 HOH HOH C . I 6 HOH 26 311 311 HOH HOH C . I 6 HOH 27 312 312 HOH HOH C . I 6 HOH 28 313 313 HOH HOH C . I 6 HOH 29 318 318 HOH HOH C . I 6 HOH 30 319 319 HOH HOH C . I 6 HOH 31 320 320 HOH HOH C . I 6 HOH 32 321 321 HOH HOH C . I 6 HOH 33 325 325 HOH HOH C . I 6 HOH 34 326 326 HOH HOH C . I 6 HOH 35 327 327 HOH HOH C . I 6 HOH 36 331 331 HOH HOH C . I 6 HOH 37 332 332 HOH HOH C . I 6 HOH 38 334 334 HOH HOH C . I 6 HOH 39 338 338 HOH HOH C . I 6 HOH 40 340 340 HOH HOH C . I 6 HOH 41 341 341 HOH HOH C . I 6 HOH 42 345 345 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 software_defined_assembly PISA hexameric 6 3 software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I 2 1,2 A,B,C,D,E,F,G,H,I 3 3,4 A,G 3 1,2 B,C,D,E,F,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8030 ? 1 MORE -88 ? 1 'SSA (A^2)' 9680 ? 2 'ABSA (A^2)' 18240 ? 2 MORE -195 ? 2 'SSA (A^2)' 17180 ? 3 'ABSA (A^2)' 16680 ? 3 MORE -181 ? 3 'SSA (A^2)' 18740 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 69.8600000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 5_545 -x+1/2,y-1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 34.9300000000 0.0000000000 1.0000000000 0.0000000000 -34.9300000000 0.0000000000 0.0000000000 -1.0000000000 48.5750000000 4 'crystal symmetry operation' 6_555 x+1/2,-y+1/2,-z+1/2 1.0000000000 0.0000000000 0.0000000000 34.9300000000 0.0000000000 -1.0000000000 0.0000000000 34.9300000000 0.0000000000 0.0000000000 -1.0000000000 48.5750000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-11-12 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_initial_refinement_model 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 XSCALE 'data scaling' . ? 2 X-PLOR 'model building' 3.1 ? 3 X-PLOR refinement 3.1 ? 4 XDS 'data reduction' . ? 5 X-PLOR phasing 3.1 ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE B 71 ? ? -124.34 -55.77 2 1 SER C 214 ? ? -112.63 -71.55 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 11 ? A SER 11 2 1 Y 1 A GLY 12 ? A GLY 12 3 1 Y 1 A LEU 13 ? A LEU 13 4 1 Y 1 C ALA 149 ? C ALA 1 5 1 Y 1 C ASN 150 ? C ASN 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SULFATE ION' SO4 5 'L-1-(4-CHLOROPHENYL)-2-(ACETAMIDO)ETHANE BORONIC ACID' V36 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3GCH _pdbx_initial_refinement_model.details 'PDB ENTRY 3GCH' #