HEADER ACTIN-BINDING PROTEIN 20-OCT-93 1VIL OBSLTE 01-APR-97 1VIL 2VIL TITLE SOLUTION STRUCTURE OF VILLIN 14T, A DOMAIN CONSERVED AMONG TITLE 2 ACTIN-SEVERING PROTEINS COMPND MOL_ID: 1; COMPND 2 MOLECULE:; COMPND 3 CHAIN: NULL; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS ACTIN-BINDING PROTEIN EXPDTA NMR, 10 STRUCTURES AUTHOR M.A.MARKUS,T.NAKAYAMA,P.MATSUDAIRA,G.WAGNER REVDAT 1 31-JAN-94 1VIL 0 JRNL AUTH M.A.MARKUS,T.NAKAYAMA,P.MATSUDAIRA,G.WAGNER JRNL TITL SOLUTION STRUCTURE OF VILLIN 14T, A DOMAIN JRNL TITL 2 CONSERVED AMONG ACTIN-SEVERING PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VIL COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 5 REMARK 5 1VIL THE TEN BEST STRUCTURES, AS DISCUSSED IN THE PAPER REMARK 5 CITED IN 1VIL *JRNL*, ARE DEPOSITED. STRUCTURES ARE IN REMARK 5 ORDER FROM 1VIL LOWEST FINAL ERROR (FROM *DGII*) TO REMARK 5 HIGHEST. INDIVIDUAL 1VIL STRUCTURES ARE DELINEATED WITH THE REMARK 5 PDB KEYWORDS *MODEL* 1VIL AND *ENDMDL*. 1VIL REMARK 6 REMARK 6 1VIL DATA FOR STRUCTURE DETERMINATION WERE COLLECTED AT PH REMARK 6 4.15 1VIL AND 25 DEGREES CELSIUS. THE DATA ARE SUMMARIZED REMARK 6 BELOW. A 1VIL DETAILED LIST OF THE RESTRAINTS USED IN THE REMARK 6 STRUCTURE 1VIL CALCULATIONS HAS BEEN SUBMITTED WITH THE REMARK 6 PAPER CITED IN 1VIL *JRNL* AS SUPPLEMENTARY MATERIAL AND REMARK 6 CAN ALSO BE FOUND AS 1VIL PDB ENTRY R1VILMR. 1VIL 1VIL NOE REMARK 6 DISTANCE RESTRAINTS (TOTAL) 720 1VIL INTERPROTON DISTANCES REMARK 6 1VIL INTRA-RESIDUE 17 1VIL INTER-RESIDUE SEQUENTIAL (|I-J|= REMARK 6 1) 300 1VIL INTER-RESIDUE MEDIUM 97 1VIL INTER-RESIDUE LONG REMARK 6 RANGE (|I-J|>4) 306 1VIL HYDROGEN BOND DISTANCES 86 1VIL REMARK 6 DIHEDRAL ANGLES 1VIL PHI 67 1VIL PSI 46 1VIL STEREOSPECIFIC REMARK 6 ASSIGNMENTS 1VIL BETA METHYLENE 32 1VIL GAMMA METHYLS OF REMARK 6 VALINE 8 1VIL DELTA METHYLS OF LEUCINE 5 1VIL REMARK 7 REMARK 7 1VIL THE TEN BEST STRUCTURES SATISFY THE EXPERIMENTAL REMARK 7 RESTRAINTS 1VIL REASONABLY WELL. FOR THE NOE DISTANCE REMARK 7 RESTRAINTS, ON 1VIL AVERAGE, THERE ARE ONLY 2.6 VIOLATIONS REMARK 7 ABOVE 0.5 ANGSTROMS 1VIL PER STRUCTURE, 23.4 VIOLATIONS REMARK 7 ABOVE 0.2 ANGSTROMS PER 1VIL STRUCTURE, AND NO VIOLATIONS REMARK 7 ABOVE 0.9 ANGSTROMS IN ANY 1VIL STRUCTURE. FOR THE DIHEDRAL REMARK 7 ANGLE RESTRAINTS, ON AVERAGE, 1VIL THERE ARE ONLY 2.9 REMARK 7 VIOLATIONS ABOVE 1.0 DEGREE PER 1VIL STRUCTURE AND ONLY A REMARK 7 SINGLE ANGLE VIOLATION ABOVE 10.0 1VIL DEGREES IN ONE OF REMARK 7 THE STRUCTURES. 1VIL REMARK 8 REMARK 8 1VIL THE STRUCTURES ARE GENERALLY WELL-DEFINED AND REMARK 8 CORRESPOND 1VIL TO THE SAME OVERALL CONFORMATION. 1VIL REMARK 8 AVERAGE RMSD'S FROM THE AVERAGE STRUCTURE: 1VIL CORE REMARK 8 BACKBONE (CENTRAL SHEET, HELIX A2, 1VIL PARALLEL SHEET, AND REMARK 8 HELIX A3) 0.70 +/- 0.10 A 1VIL RESIDUES 1-121, BACKBONE REMARK 8 1.15 +/- 0.17 A 1VIL RESIDUES 1-121, ALL HEAVY ATOMS 1.63 + REMARK 8 /- 0.16 A 1VIL REMARK 9 REMARK 9 1VIL SHEET IDENTIFIER *CEN* AND *PAR* ON SHEET RECORDS REMARK 9 BELOW 1VIL REFERS TO "CENTRAL" AND "PARALLEL" RESPECTIVELY. REMARK 9 1VIL REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : NULL REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS 5 -41.65 84.65 REMARK 500 1 ASP 43 -103.70 -156.71 REMARK 500 1 SER 123 -97.47 60.36 REMARK 500 2 LYS 5 -88.47 43.49 REMARK 500 2 GLU 24 -134.45 172.64 REMARK 500 3 GLU 24 40.74 149.57 REMARK 500 3 SER 123 -98.27 62.65 REMARK 500 4 LYS 5 -45.20 84.73 REMARK 500 4 GLU 24 -145.58 168.54 REMARK 500 4 ASP 43 -105.84 -153.46 REMARK 500 5 GLU 24 -142.38 176.59 REMARK 500 5 ASP 43 -105.92 -159.17 REMARK 500 5 SER 69 147.72 61.67 REMARK 500 6 SER 123 -84.64 72.59 REMARK 500 7 SER 90 52.70 148.75 REMARK 500 8 LEU 114 139.74 73.43 REMARK 500 9 ASP 43 -101.48 -156.11 REMARK 500 10 THR 15 154.64 82.94 REMARK 500 10 ASN 25 -35.94 91.28 REMARK 500 10 LEU 114 139.87 82.04 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR 33 LYS 34 10 131.66 SEQRES 1 126 VAL GLU LEU SER LYS LYS VAL THR GLY LYS LEU ASP LYS SEQRES 2 126 THR THR PRO GLY ILE GLN ILE TRP ARG ILE GLU ASN MET SEQRES 3 126 GLU MET VAL PRO VAL PRO THR LYS SER TYR GLY ASN PHE SEQRES 4 126 TYR GLU GLY ASP CYS TYR VAL LEU LEU SER THR ARG LYS SEQRES 5 126 THR GLY SER GLY PHE SER TYR ASN ILE HIS TYR TRP LEU SEQRES 6 126 GLY LYS ASN SER SER GLN ASP GLU GLN GLY ALA ALA ALA SEQRES 7 126 ILE TYR THR THR GLN MET ASP GLU TYR LEU GLY SER VAL SEQRES 8 126 ALA VAL GLN HIS ARG GLU VAL GLN GLY HIS GLU SER GLU SEQRES 9 126 THR PHE ARG ALA TYR PHE LYS GLN GLY LEU ILE TYR LYS SEQRES 10 126 GLN GLY GLY VAL ALA SER GLY MET LYS FTNOTE 1 THR 33 - LYS 34 MODEL 10 OMEGA =131.67 PEPTIDE BOND FTNOTE 1 DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION FTNOTE 2 RESIDUES 12 AND 13 ARE NOT ASSIGNED. FTNOTE 3 RESIDUES 122 - 126 HAVE NO LONG-RANGE NOE RESTRAINTS AND FTNOTE 3 THEREFORE ARE NOT WELL-DETERMINED IN THESE STRUCTURES. HELIX 1 A1 VAL 1 LEU 11 1SUGGESTED BUT NOT WELL-DEFINE 11 HELIX 2 A2 GLN 71 LEU 88 1WELL-DEFINED 18 HELIX 3 A3 GLU 104 PHE 110 1WELL-DEFINED 7 SHEET 1 CEN 5 GLU 27 VAL 31 0 SHEET 2 CEN 5 GLY 17 GLU 24 -1 N ARG 22 O VAL 29 SHEET 3 CEN 5 ASP 43 THR 53 -1 N LEU 48 O GLN 19 SHEET 4 CEN 5 GLY 56 GLY 66 -1 N HIS 62 O LEU 47 SHEET 5 CEN 5 ALA 92 VAL 98 1 O HIS 95 N TYR 63 SHEET 1 PAR 2 GLY 37 GLU 41 0 SHEET 2 PAR 2 LEU 114 GLN 118 1 O ILE 115 N PHE 39 TURN 1 B12 GLU 24 GLU 27 TURN 2 B45 THR 53 GLY 56 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1