HEADER HYDROLASE 01-DEC-03 1VIQ TITLE CRYSTAL STRUCTURE OF PUTATIVE ADP RIBOSE PYROPHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSE PYROPHOSPHATASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: ADP-RIBOSE DIPHOSPHATASE, ADENOSINE DIPHOSPHORIBOSE COMPND 5 PYROPHOSPHATASE, ADPR-PPASE, ADP-RIBOSE PHOSPHOHYDROLASE; COMPND 6 EC: 3.6.1.13; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: NUDF, B3034, C3780, Z4391, ECS3922, SF3074, S3279; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR STRUCTURAL GENOMIX REVDAT 6 27-DEC-23 1VIQ 1 REMARK REVDAT 5 04-OCT-17 1VIQ 1 REMARK REVDAT 4 13-JUL-11 1VIQ 1 VERSN REVDAT 3 24-FEB-09 1VIQ 1 VERSN REVDAT 2 30-AUG-05 1VIQ 1 JRNL REVDAT 1 30-DEC-03 1VIQ 0 JRNL AUTH J.BADGER,J.M.SAUDER,J.M.ADAMS,S.ANTONYSAMY,K.BAIN, JRNL AUTH 2 M.G.BERGSEID,S.G.BUCHANAN,M.D.BUCHANAN,Y.BATIYENKO, JRNL AUTH 3 J.A.CHRISTOPHER,S.EMTAGE,A.EROSHKINA,I.FEIL,E.B.FURLONG, JRNL AUTH 4 K.S.GAJIWALA,X.GAO,D.HE,J.HENDLE,A.HUBER,K.HODA,P.KEARINS, JRNL AUTH 5 C.KISSINGER,B.LAUBERT,H.A.LEWIS,J.LIN,K.LOOMIS,D.LORIMER, JRNL AUTH 6 G.LOUIE,M.MALETIC,C.D.MARSH,I.MILLER,J.MOLINARI, JRNL AUTH 7 H.J.MULLER-DIECKMANN,J.M.NEWMAN,B.W.NOLAND,B.PAGARIGAN, JRNL AUTH 8 F.PARK,T.S.PEAT,K.W.POST,S.RADOJICIC,A.RAMOS,R.ROMERO, JRNL AUTH 9 M.E.RUTTER,W.E.SANDERSON,K.D.SCHWINN,J.TRESSER,J.WINHOVEN, JRNL AUTH10 T.A.WRIGHT,L.WU,J.XU,T.J.HARRIS JRNL TITL STRUCTURAL ANALYSIS OF A SET OF PROTEINS RESULTING FROM A JRNL TITL 2 BACTERIAL GENOMICS PROJECT JRNL REF PROTEINS V. 60 787 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 16021622 JRNL DOI 10.1002/PROT.20541 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 4.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 34608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1764 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4718 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 251 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.67800 REMARK 3 B22 (A**2) : 3.67800 REMARK 3 B33 (A**2) : -5.51700 REMARK 3 B12 (A**2) : 1.83900 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.014 ; NULL REMARK 3 ANGLE DISTANCE (A) : 1.556 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.006 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.103 ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 7.064 ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.986 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.647 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 2.207 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.466 ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000001904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 32-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, TRUNCATE REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA, TRUNCATE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44583 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 51.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.19400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.01491 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.96133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.98067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.98067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 103.96133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 259.90333 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 LEU A 158 REMARK 465 ALA A 159 REMARK 465 ASP A 160 REMARK 465 GLU A 161 REMARK 465 ALA A 208 REMARK 465 GLU A 209 REMARK 465 GLY A 210 REMARK 465 GLY A 211 REMARK 465 SER A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 MET B -1 REMARK 465 GLY B 157 REMARK 465 LEU B 158 REMARK 465 ALA B 159 REMARK 465 ASP B 160 REMARK 465 GLU B 161 REMARK 465 ASN B 162 REMARK 465 GLU B 163 REMARK 465 ALA B 208 REMARK 465 GLU B 209 REMARK 465 GLY B 210 REMARK 465 GLY B 211 REMARK 465 SER B 212 REMARK 465 HIS B 213 REMARK 465 HIS B 214 REMARK 465 HIS B 215 REMARK 465 HIS B 216 REMARK 465 HIS B 217 REMARK 465 HIS B 218 REMARK 465 MET C -1 REMARK 465 SER C 0 REMARK 465 LEU C 1 REMARK 465 LYS C 2 REMARK 465 PRO C 3 REMARK 465 ASP C 4 REMARK 465 ASN C 5 REMARK 465 SER C 153 REMARK 465 GLY C 154 REMARK 465 ILE C 155 REMARK 465 HIS C 156 REMARK 465 GLY C 157 REMARK 465 LEU C 158 REMARK 465 ALA C 159 REMARK 465 ASP C 160 REMARK 465 GLU C 161 REMARK 465 GLU C 209 REMARK 465 GLY C 210 REMARK 465 GLY C 211 REMARK 465 SER C 212 REMARK 465 HIS C 213 REMARK 465 HIS C 214 REMARK 465 HIS C 215 REMARK 465 HIS C 216 REMARK 465 HIS C 217 REMARK 465 HIS C 218 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 49 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 SER A 153 OG REMARK 470 ASN A 162 CG OD1 ND2 REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 SER B 0 OG REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 GLU B 100 CG CD OE1 OE2 REMARK 470 ILE B 155 CG1 CG2 CD1 REMARK 470 HIS B 156 CG ND1 CD2 CE1 NE2 REMARK 470 LEU C 6 CG CD1 CD2 REMARK 470 GLN C 43 CG CD OE1 NE2 REMARK 470 ARG C 49 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 100 CG CD OE1 OE2 REMARK 470 ASN C 162 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 139 OD2 ASP C 185 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 139 OD2 ASP A 185 6556 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 14 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 69 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 83 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 65 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 83 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP C 14 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP C 31 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 164 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 19 153.50 175.52 REMARK 500 ARG A 55 37.98 -163.36 REMARK 500 GLU A 100 -127.00 45.65 REMARK 500 LYS A 121 -112.65 -97.92 REMARK 500 VAL A 126 -87.05 -104.88 REMARK 500 THR A 150 -6.76 -59.67 REMARK 500 ASP A 185 19.48 -150.70 REMARK 500 ASP B 4 153.44 -44.58 REMARK 500 PRO B 7 42.83 -84.05 REMARK 500 TYR B 24 133.76 -173.18 REMARK 500 THR B 84 -11.54 -145.68 REMARK 500 GLU B 100 -109.73 42.84 REMARK 500 LYS B 121 -108.93 -90.49 REMARK 500 SER B 132 83.26 -158.22 REMARK 500 ASP B 185 29.29 -146.21 REMARK 500 GLU C 100 -98.85 32.11 REMARK 500 LYS C 121 -114.99 -67.47 REMARK 500 VAL C 126 -87.57 -95.88 REMARK 500 SER C 132 75.31 -162.44 REMARK 500 ALA C 149 -39.09 -39.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 1VIQ A 1 208 UNP Q93K97 ADPP_ECOLI 2 209 DBREF 1VIQ B 1 208 UNP Q93K97 ADPP_ECOLI 2 209 DBREF 1VIQ C 1 208 UNP Q93K97 ADPP_ECOLI 2 209 SEQADV 1VIQ MET A -1 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ SER A 0 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ SER A 28 UNP Q93K97 PHE 29 VARIANT SEQADV 1VIQ GLU A 209 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ GLY A 210 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ GLY A 211 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ SER A 212 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS A 213 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS A 214 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS A 215 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS A 216 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS A 217 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS A 218 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ MET B -1 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ SER B 0 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ SER B 28 UNP Q93K97 PHE 29 VARIANT SEQADV 1VIQ GLU B 209 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ GLY B 210 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ GLY B 211 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ SER B 212 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS B 213 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS B 214 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS B 215 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS B 216 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS B 217 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS B 218 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ MET C -1 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ SER C 0 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ SER C 28 UNP Q93K97 PHE 29 VARIANT SEQADV 1VIQ GLU C 209 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ GLY C 210 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ GLY C 211 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ SER C 212 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS C 213 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS C 214 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS C 215 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS C 216 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS C 217 UNP Q93K97 CLONING ARTIFACT SEQADV 1VIQ HIS C 218 UNP Q93K97 CLONING ARTIFACT SEQRES 1 A 220 MET SER LEU LYS PRO ASP ASN LEU PRO VAL THR PHE GLY SEQRES 2 A 220 LYS ASN ASP VAL GLU ILE ILE ALA ARG GLU THR LEU TYR SEQRES 3 A 220 ARG GLY PHE SER SER LEU ASP LEU TYR ARG PHE ARG HIS SEQRES 4 A 220 ARG LEU PHE ASN GLY GLN MET SER HIS GLU VAL ARG ARG SEQRES 5 A 220 GLU ILE PHE GLU ARG GLY HIS ALA ALA VAL LEU LEU PRO SEQRES 6 A 220 PHE ASP PRO VAL ARG ASP GLU VAL VAL LEU ILE GLU GLN SEQRES 7 A 220 ILE ARG ILE ALA ALA TYR ASP THR SER GLU THR PRO TRP SEQRES 8 A 220 LEU LEU GLU MET VAL ALA GLY MET ILE GLU GLU GLY GLU SEQRES 9 A 220 SER VAL GLU ASP VAL ALA ARG ARG GLU ALA ILE GLU GLU SEQRES 10 A 220 ALA GLY LEU ILE VAL LYS ARG THR LYS PRO VAL LEU SER SEQRES 11 A 220 PHE LEU ALA SER PRO GLY GLY THR SER GLU ARG SER SER SEQRES 12 A 220 ILE MET VAL GLY GLU VAL ASP ALA THR THR ALA SER GLY SEQRES 13 A 220 ILE HIS GLY LEU ALA ASP GLU ASN GLU ASP ILE ARG VAL SEQRES 14 A 220 HIS VAL VAL SER ARG GLU GLN ALA TYR GLN TRP VAL GLU SEQRES 15 A 220 GLU GLY LYS ILE ASP ASN ALA ALA SER VAL ILE ALA LEU SEQRES 16 A 220 GLN TRP LEU GLN LEU HIS HIS GLN ALA LEU LYS ASN GLU SEQRES 17 A 220 TRP ALA GLU GLY GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 220 MET SER LEU LYS PRO ASP ASN LEU PRO VAL THR PHE GLY SEQRES 2 B 220 LYS ASN ASP VAL GLU ILE ILE ALA ARG GLU THR LEU TYR SEQRES 3 B 220 ARG GLY PHE SER SER LEU ASP LEU TYR ARG PHE ARG HIS SEQRES 4 B 220 ARG LEU PHE ASN GLY GLN MET SER HIS GLU VAL ARG ARG SEQRES 5 B 220 GLU ILE PHE GLU ARG GLY HIS ALA ALA VAL LEU LEU PRO SEQRES 6 B 220 PHE ASP PRO VAL ARG ASP GLU VAL VAL LEU ILE GLU GLN SEQRES 7 B 220 ILE ARG ILE ALA ALA TYR ASP THR SER GLU THR PRO TRP SEQRES 8 B 220 LEU LEU GLU MET VAL ALA GLY MET ILE GLU GLU GLY GLU SEQRES 9 B 220 SER VAL GLU ASP VAL ALA ARG ARG GLU ALA ILE GLU GLU SEQRES 10 B 220 ALA GLY LEU ILE VAL LYS ARG THR LYS PRO VAL LEU SER SEQRES 11 B 220 PHE LEU ALA SER PRO GLY GLY THR SER GLU ARG SER SER SEQRES 12 B 220 ILE MET VAL GLY GLU VAL ASP ALA THR THR ALA SER GLY SEQRES 13 B 220 ILE HIS GLY LEU ALA ASP GLU ASN GLU ASP ILE ARG VAL SEQRES 14 B 220 HIS VAL VAL SER ARG GLU GLN ALA TYR GLN TRP VAL GLU SEQRES 15 B 220 GLU GLY LYS ILE ASP ASN ALA ALA SER VAL ILE ALA LEU SEQRES 16 B 220 GLN TRP LEU GLN LEU HIS HIS GLN ALA LEU LYS ASN GLU SEQRES 17 B 220 TRP ALA GLU GLY GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 220 MET SER LEU LYS PRO ASP ASN LEU PRO VAL THR PHE GLY SEQRES 2 C 220 LYS ASN ASP VAL GLU ILE ILE ALA ARG GLU THR LEU TYR SEQRES 3 C 220 ARG GLY PHE SER SER LEU ASP LEU TYR ARG PHE ARG HIS SEQRES 4 C 220 ARG LEU PHE ASN GLY GLN MET SER HIS GLU VAL ARG ARG SEQRES 5 C 220 GLU ILE PHE GLU ARG GLY HIS ALA ALA VAL LEU LEU PRO SEQRES 6 C 220 PHE ASP PRO VAL ARG ASP GLU VAL VAL LEU ILE GLU GLN SEQRES 7 C 220 ILE ARG ILE ALA ALA TYR ASP THR SER GLU THR PRO TRP SEQRES 8 C 220 LEU LEU GLU MET VAL ALA GLY MET ILE GLU GLU GLY GLU SEQRES 9 C 220 SER VAL GLU ASP VAL ALA ARG ARG GLU ALA ILE GLU GLU SEQRES 10 C 220 ALA GLY LEU ILE VAL LYS ARG THR LYS PRO VAL LEU SER SEQRES 11 C 220 PHE LEU ALA SER PRO GLY GLY THR SER GLU ARG SER SER SEQRES 12 C 220 ILE MET VAL GLY GLU VAL ASP ALA THR THR ALA SER GLY SEQRES 13 C 220 ILE HIS GLY LEU ALA ASP GLU ASN GLU ASP ILE ARG VAL SEQRES 14 C 220 HIS VAL VAL SER ARG GLU GLN ALA TYR GLN TRP VAL GLU SEQRES 15 C 220 GLU GLY LYS ILE ASP ASN ALA ALA SER VAL ILE ALA LEU SEQRES 16 C 220 GLN TRP LEU GLN LEU HIS HIS GLN ALA LEU LYS ASN GLU SEQRES 17 C 220 TRP ALA GLU GLY GLY SER HIS HIS HIS HIS HIS HIS FORMUL 4 HOH *251(H2 O) HELIX 1 1 GLY A 11 ASN A 13 5 3 HELIX 2 2 ILE A 79 SER A 85 5 7 HELIX 3 3 SER A 103 GLU A 115 1 13 HELIX 4 4 ASP A 148 ALA A 152 5 5 HELIX 5 5 ARG A 172 GLU A 181 1 10 HELIX 6 6 ASN A 186 TRP A 207 1 22 HELIX 7 7 GLY B 11 ASN B 13 5 3 HELIX 8 8 ILE B 79 SER B 85 5 7 HELIX 9 9 SER B 103 GLY B 117 1 15 HELIX 10 10 ASP B 148 ALA B 152 5 5 HELIX 11 11 ARG B 172 GLU B 181 1 10 HELIX 12 12 ASN B 186 TRP B 207 1 22 HELIX 13 13 GLY C 11 ASN C 13 5 3 HELIX 14 14 ILE C 79 SER C 85 5 7 HELIX 15 15 SER C 103 GLY C 117 1 15 HELIX 16 16 ASP C 148 ALA C 152 5 5 HELIX 17 17 ARG C 172 GLU C 181 1 10 HELIX 18 18 ASN C 186 ALA C 208 1 23 SHEET 1 A 3 VAL A 15 ARG A 25 0 SHEET 2 A 3 SER A 29 HIS A 37 -1 O ARG A 34 N ALA A 19 SHEET 3 A 3 VAL A 48 GLU A 54 -1 O GLU A 54 N SER A 29 SHEET 1 B 5 TRP A 89 GLU A 92 0 SHEET 2 B 5 GLU A 70 ILE A 77 -1 N ILE A 74 O GLU A 92 SHEET 3 B 5 ALA A 58 ASP A 65 -1 N ASP A 65 O GLU A 70 SHEET 4 B 5 ARG A 139 GLU A 146 1 O MET A 143 N VAL A 60 SHEET 5 B 5 THR A 123 LEU A 130 -1 N PHE A 129 O SER A 140 SHEET 1 C 5 VAL A 94 MET A 97 0 SHEET 2 C 5 ALA A 58 ASP A 65 -1 N LEU A 61 O VAL A 94 SHEET 3 C 5 GLU A 70 ILE A 77 -1 O GLU A 70 N ASP A 65 SHEET 4 C 5 ILE A 165 SER A 171 -1 O VAL A 170 N VAL A 71 SHEET 5 C 5 ILE A 155 HIS A 156 -1 N HIS A 156 O ILE A 165 SHEET 1 D 3 VAL B 15 ARG B 25 0 SHEET 2 D 3 SER B 29 HIS B 37 -1 O LEU B 32 N GLU B 21 SHEET 3 D 3 VAL B 48 GLU B 54 -1 O VAL B 48 N PHE B 35 SHEET 1 E 5 TRP B 89 GLU B 92 0 SHEET 2 E 5 GLU B 70 ILE B 77 -1 N GLN B 76 O LEU B 90 SHEET 3 E 5 HIS B 57 ASP B 65 -1 N ASP B 65 O GLU B 70 SHEET 4 E 5 ARG B 139 GLU B 146 1 O MET B 143 N VAL B 60 SHEET 5 E 5 THR B 123 LEU B 130 -1 N LEU B 127 O ILE B 142 SHEET 1 F 4 VAL B 94 ILE B 98 0 SHEET 2 F 4 HIS B 57 ASP B 65 -1 N HIS B 57 O ILE B 98 SHEET 3 F 4 GLU B 70 ILE B 77 -1 O GLU B 70 N ASP B 65 SHEET 4 F 4 ARG B 166 SER B 171 -1 O VAL B 170 N VAL B 71 SHEET 1 G 3 VAL C 15 ARG C 20 0 SHEET 2 G 3 SER C 29 HIS C 37 -1 O ARG C 34 N ALA C 19 SHEET 3 G 3 TYR C 24 ARG C 25 -1 N TYR C 24 O LEU C 30 SHEET 1 H 3 VAL C 15 ARG C 20 0 SHEET 2 H 3 SER C 29 HIS C 37 -1 O ARG C 34 N ALA C 19 SHEET 3 H 3 VAL C 48 GLU C 54 -1 O VAL C 48 N PHE C 35 SHEET 1 I 5 TRP C 89 GLU C 92 0 SHEET 2 I 5 GLU C 70 ILE C 77 -1 N ILE C 74 O GLU C 92 SHEET 3 I 5 ALA C 58 ASP C 65 -1 N ASP C 65 O GLU C 70 SHEET 4 I 5 ARG C 139 GLU C 146 1 O MET C 143 N VAL C 60 SHEET 5 I 5 THR C 123 LEU C 130 -1 N LYS C 124 O VAL C 144 SHEET 1 J 4 VAL C 94 MET C 97 0 SHEET 2 J 4 ALA C 58 ASP C 65 -1 N ALA C 59 O GLY C 96 SHEET 3 J 4 GLU C 70 ILE C 77 -1 O GLU C 70 N ASP C 65 SHEET 4 J 4 ARG C 166 SER C 171 -1 O VAL C 170 N VAL C 71 CISPEP 1 LEU A 6 PRO A 7 0 4.34 CRYST1 98.176 98.176 155.942 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010186 0.005881 0.000000 0.00000 SCALE2 0.000000 0.011762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006413 0.00000