HEADER COMPLEX (GLYCOSIDASE/INHIBITOR) 21-JUL-98 1VIW TITLE TENEBRIO MOLITOR ALPHA-AMYLASE-INHIBITOR COMPLEX CAVEAT 1VIW PCA A 1 HAS WRONG CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-AMYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ALPHA-AMYLASE-INHIBITOR; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: ALPHA-AI SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TENEBRIO MOLITOR; SOURCE 3 ORGANISM_COMMON: YELLOW MEALWORM; SOURCE 4 ORGANISM_TAXID: 7067; SOURCE 5 OTHER_DETAILS: LARVAE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: PHASEOLUS VULGARIS; SOURCE 8 ORGANISM_TAXID: 3885; SOURCE 9 ORGAN: SEED KEYWDS COMPLEX (GLYCOSIDASE-INHIBITOR), HYDROLASE, LECTIN, INSECT ALPHA- KEYWDS 2 AMYLASE, INHIBITORS, COMPLEX (GLYCOSIDASE-INHIBITOR) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR V.NAHOUM,M.P.EGLOFF,F.PAYAN REVDAT 7 03-APR-24 1VIW 1 HETSYN REVDAT 6 29-JUL-20 1VIW 1 CAVEAT COMPND REMARK HETNAM REVDAT 6 2 1 LINK SITE ATOM REVDAT 5 25-DEC-19 1VIW 1 SEQADV SEQRES LINK REVDAT 4 30-MAR-16 1VIW 1 REMARK REVDAT 3 13-JUL-11 1VIW 1 VERSN REVDAT 2 24-FEB-09 1VIW 1 VERSN REVDAT 1 22-JUL-99 1VIW 0 JRNL AUTH V.NAHOUM,F.FARISEI,V.LE-BERRE-ANTON,M.P.EGLOFF,P.ROUGE, JRNL AUTH 2 E.POERIO,F.PAYAN JRNL TITL A PLANT-SEED INHIBITOR OF TWO CLASSES OF ALPHA-AMYLASES: JRNL TITL 2 X-RAY ANALYSIS OF TENEBRIO MOLITOR LARVAE ALPHA-AMYLASE IN JRNL TITL 3 COMPLEX WITH THE BEAN PHASEOLUS VULGARIS INHIBITOR. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 55 360 1999 JRNL REFN ISSN 0907-4449 JRNL PMID 10089450 JRNL DOI 10.1107/S0907444998010701 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 14976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1191 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 908 REMARK 3 BIN R VALUE (WORKING SET) : 0.3930 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 91 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5160 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.55 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 2.102 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VIW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177053. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NOV-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LURE REMARK 200 BEAMLINE : DW32 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : Y REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14982 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.15300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PPA AND ALPHA-AI REMARK 200 REMARK 200 REMARK: PPA IS PORCINE PANCREATIC ALPHA-AMYLASE AND ALPHA-AI REMARK 200 PHASEOLUS VULGARIS INHIBITOR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 84.23750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.95550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 84.23750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.95550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 76 REMARK 465 ASN B 77 REMARK 465 PRO B 91 REMARK 465 GLU B 92 REMARK 465 SER B 93 REMARK 465 LYS B 94 REMARK 465 GLY B 95 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 426 O GLY A 430 1.96 REMARK 500 O PRO A 420 OH TYR A 424 1.98 REMARK 500 O SER A 12 N GLY A 38 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 123 N VAL A 123 CA -0.215 REMARK 500 VAL A 123 CA VAL A 123 CB 0.134 REMARK 500 PHE A 182 CA PHE A 182 C -0.181 REMARK 500 ASN A 349 N ASN A 349 CA -0.133 REMARK 500 ASN A 349 C ASP A 350 N -0.191 REMARK 500 TYR A 424 C CYS A 425 N 0.158 REMARK 500 VAL A 442 C VAL A 442 O -0.168 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 104 CA - C - N ANGL. DEV. = -13.9 DEGREES REMARK 500 ASN A 104 O - C - N ANGL. DEV. = 12.5 DEGREES REMARK 500 GLY A 105 C - N - CA ANGL. DEV. = 14.7 DEGREES REMARK 500 GLY A 105 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG A 146 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 183 N - CA - C ANGL. DEV. = -24.4 DEGREES REMARK 500 GLY A 293 N - CA - C ANGL. DEV. = -24.4 DEGREES REMARK 500 SER A 294 N - CA - C ANGL. DEV. = 22.4 DEGREES REMARK 500 ASP A 338 C - N - CA ANGL. DEV. = 15.3 DEGREES REMARK 500 GLY A 341 CA - C - N ANGL. DEV. = -18.3 DEGREES REMARK 500 ASN A 349 O - C - N ANGL. DEV. = -10.7 DEGREES REMARK 500 ARG A 363 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 THR A 443 N - CA - CB ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG B 136 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 SER B 176 O - C - N ANGL. DEV. = -10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 5 10.45 91.82 REMARK 500 SER A 8 154.95 -35.38 REMARK 500 SER A 12 164.88 56.61 REMARK 500 GLU A 18 -6.03 70.45 REMARK 500 TRP A 21 -70.17 -59.91 REMARK 500 SER A 43 152.71 -46.30 REMARK 500 PRO A 44 104.63 -39.01 REMARK 500 ARG A 54 72.46 44.99 REMARK 500 ARG A 59 -4.12 -56.14 REMARK 500 ILE A 67 46.30 -72.06 REMARK 500 MET A 100 -94.56 -126.41 REMARK 500 MET A 103 175.71 150.29 REMARK 500 ALA A 113 100.25 -163.51 REMARK 500 VAL A 123 -75.69 -62.69 REMARK 500 ASN A 137 -87.79 -82.86 REMARK 500 ARG A 154 103.94 -52.43 REMARK 500 VAL A 179 152.58 -47.47 REMARK 500 ALA A 186 71.36 57.32 REMARK 500 ASN A 204 155.46 -44.39 REMARK 500 LEU A 205 156.09 -48.90 REMARK 500 ASP A 208 1.81 -58.02 REMARK 500 ASP A 213 121.16 -11.22 REMARK 500 PHE A 239 23.93 -154.44 REMARK 500 PRO A 269 -30.53 -38.79 REMARK 500 GLU A 270 23.99 -74.50 REMARK 500 LEU A 277 21.17 -69.98 REMARK 500 VAL A 283 -88.66 -85.93 REMARK 500 ASN A 288 3.67 -64.88 REMARK 500 SER A 294 -150.28 47.86 REMARK 500 PRO A 302 -71.16 -53.27 REMARK 500 MET A 312 -80.09 -56.91 REMARK 500 LEU A 313 -60.05 -28.67 REMARK 500 TYR A 317 135.61 -33.18 REMARK 500 ASP A 330 -158.12 -104.34 REMARK 500 PRO A 335 -167.66 -60.94 REMARK 500 ASP A 338 114.68 -174.53 REMARK 500 SER A 340 77.93 99.92 REMARK 500 SER A 345 70.04 -114.98 REMARK 500 ASN A 349 -137.95 47.10 REMARK 500 ASP A 350 96.90 172.69 REMARK 500 THR A 353 -157.66 -80.38 REMARK 500 ASN A 356 50.97 38.35 REMARK 500 ASN A 384 63.55 61.31 REMARK 500 ASP A 390 -103.08 -161.46 REMARK 500 PHE A 395 -166.68 -175.74 REMARK 500 SER A 399 2.92 -67.70 REMARK 500 ASP A 410 105.94 -59.61 REMARK 500 ASN A 412 74.27 -110.29 REMARK 500 LEU A 415 -158.98 -112.71 REMARK 500 THR A 417 -14.48 -145.95 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 341 -14.92 REMARK 500 VAL A 442 -14.38 REMARK 500 ASN B 116 12.34 REMARK 500 SER B 176 31.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 500 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 98 OD1 REMARK 620 2 ARG A 146 O 138.9 REMARK 620 3 ASP A 155 OD2 125.8 80.6 REMARK 620 4 ASP A 155 OD1 80.1 103.6 50.2 REMARK 620 5 HIS A 189 O 68.1 72.9 143.1 111.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CIC REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: BINDING SITE DBREF 1VIW A 2 471 UNP P56634 AMY_TENMO 2 471 DBREF 1VIW B 1 205 UNP P02873 LEA1_PHAVU 24 228 SEQADV 1VIW ASN A 73 UNP P56634 ASP 73 CONFLICT SEQADV 1VIW ALA A 158 UNP P56634 GLN 158 CONFLICT SEQADV 1VIW ASP A 200 UNP P56634 SER 200 CONFLICT SEQRES 1 A 471 PCA LYS ASP ALA ASN PHE ALA SER GLY ARG ASN SER ILE SEQRES 2 A 471 VAL HIS LEU PHE GLU TRP LYS TRP ASN ASP ILE ALA ASP SEQRES 3 A 471 GLU CYS GLU ARG PHE LEU GLN PRO GLN GLY PHE GLY GLY SEQRES 4 A 471 VAL GLN ILE SER PRO PRO ASN GLU TYR LEU VAL ALA ASP SEQRES 5 A 471 GLY ARG PRO TRP TRP GLU ARG TYR GLN PRO VAL SER TYR SEQRES 6 A 471 ILE ILE ASN THR ARG SER GLY ASN GLU SER ALA PHE THR SEQRES 7 A 471 ASP MET THR ARG ARG CYS ASN ASP ALA GLY VAL ARG ILE SEQRES 8 A 471 TYR VAL ASP ALA VAL ILE ASN HIS MET THR GLY MET ASN SEQRES 9 A 471 GLY VAL GLY THR SER GLY SER SER ALA ASP HIS ASP GLY SEQRES 10 A 471 MET ASN TYR PRO ALA VAL PRO TYR GLY SER GLY ASP PHE SEQRES 11 A 471 HIS SER PRO CYS GLU VAL ASN ASN TYR GLN ASP ALA ASP SEQRES 12 A 471 ASN VAL ARG ASN CYS GLU LEU VAL GLY LEU ARG ASP LEU SEQRES 13 A 471 ASN ALA GLY SER ASP TYR VAL ARG GLY VAL LEU ILE ASP SEQRES 14 A 471 TYR MET ASN HIS MET ILE ASP LEU GLY VAL ALA GLY PHE SEQRES 15 A 471 ARG VAL ASP ALA ALA LYS HIS MET SER PRO GLY ASP LEU SEQRES 16 A 471 SER VAL ILE PHE ASP GLY LEU LYS ASN LEU ASN THR ASP SEQRES 17 A 471 TYR GLY PHE ALA ASP GLY ALA ARG PRO PHE ILE TYR GLN SEQRES 18 A 471 GLU VAL ILE ASP LEU GLY GLY GLU ALA ILE SER LYS ASN SEQRES 19 A 471 GLU TYR THR GLY PHE GLY CYS VAL LEU GLU PHE GLN PHE SEQRES 20 A 471 GLY VAL SER LEU GLY ASN ALA PHE GLN GLY GLY ASN GLN SEQRES 21 A 471 LEU LYS ASN LEU ALA ASN TRP GLY PRO GLU TRP GLY LEU SEQRES 22 A 471 LEU GLU GLY LEU ASP ALA VAL VAL PHE VAL ASP ASN HIS SEQRES 23 A 471 ASP ASN GLN ARG THR GLY GLY SER GLN ILE LEU THR TYR SEQRES 24 A 471 LYS ASN PRO LYS PRO TYR LYS MET ALA ILE ALA PHE MET SEQRES 25 A 471 LEU ALA HIS PRO TYR GLY THR THR ARG ILE MET SER SER SEQRES 26 A 471 PHE ASP PHE THR ASP ASN ASP GLN GLY PRO PRO GLN ASP SEQRES 27 A 471 GLY SER GLY ASN LEU ILE SER PRO GLY ILE ASN ASP ASP SEQRES 28 A 471 ASN THR CYS SER ASN GLY TYR VAL CYS GLU HIS ARG TRP SEQRES 29 A 471 ARG GLN VAL TYR GLY MET VAL GLY PHE ARG ASN ALA VAL SEQRES 30 A 471 GLU GLY THR GLN VAL GLU ASN TRP TRP SER ASN ASP ASP SEQRES 31 A 471 ASN GLN ILE ALA PHE SER ARG GLY SER GLN GLY PHE VAL SEQRES 32 A 471 ALA PHE THR ASN GLY GLY ASP LEU ASN GLN ASN LEU ASN SEQRES 33 A 471 THR GLY LEU PRO ALA GLY THR TYR CYS ASP VAL ILE SER SEQRES 34 A 471 GLY GLU LEU SER GLY GLY SER CYS THR GLY LYS SER VAL SEQRES 35 A 471 THR VAL GLY ASP ASN GLY SER ALA ASP ILE SER LEU GLY SEQRES 36 A 471 SER ALA GLU ASP ASP GLY VAL LEU ALA ILE HIS VAL ASN SEQRES 37 A 471 ALA LYS LEU SEQRES 1 B 205 ALA THR GLU THR SER PHE ILE ILE ASP ALA PHE ASN LYS SEQRES 2 B 205 THR ASN LEU ILE LEU GLN GLY ASP ALA THR VAL SER SER SEQRES 3 B 205 ASN GLY ASN LEU GLN LEU SER TYR ASN SER TYR ASP SER SEQRES 4 B 205 MET SER ARG ALA PHE TYR SER ALA PRO ILE GLN ILE ARG SEQRES 5 B 205 ASP SER THR THR GLY ASN VAL ALA SER PHE ASP THR ASN SEQRES 6 B 205 PHE THR MET ASN ILE ARG THR HIS ARG GLN ALA ASN SER SEQRES 7 B 205 ALA VAL GLY LEU ASP PHE VAL LEU VAL PRO VAL GLN PRO SEQRES 8 B 205 GLU SER LYS GLY ASP THR VAL THR VAL GLU PHE ASP THR SEQRES 9 B 205 PHE LEU SER ARG ILE SER ILE ASP VAL ASN ASN ASN ASP SEQRES 10 B 205 ILE LYS SER VAL PRO TRP ASP VAL HIS ASP TYR ASP GLY SEQRES 11 B 205 GLN ASN ALA GLU VAL ARG ILE THR TYR ASN SER SER THR SEQRES 12 B 205 LYS VAL PHE SER VAL SER LEU SER ASN PRO SER THR GLY SEQRES 13 B 205 LYS SER ASN ASN VAL SER THR THR VAL GLU LEU GLU LYS SEQRES 14 B 205 GLU VAL TYR ASP TRP VAL SER VAL GLY PHE SER ALA THR SEQRES 15 B 205 SER GLY ALA TYR GLN TRP SER TYR GLU THR HIS ASP VAL SEQRES 16 B 205 LEU SER TRP SER PHE SER SER LYS PHE ILE MODRES 1VIW ASN B 65 ASN GLYCOSYLATION SITE MODRES 1VIW ASN B 12 ASN GLYCOSYLATION SITE MODRES 1VIW PCA A 1 GLN PYROGLUTAMIC ACID HET PCA A 1 8 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET CL A 498 1 HET CA A 500 1 HETNAM PCA PYROGLUTAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 1 PCA C5 H7 N O3 FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 CL CL 1- FORMUL 6 CA CA 2+ HELIX 1 1 TRP A 21 ARG A 30 1 10 HELIX 2 2 GLN A 33 GLN A 35 5 3 HELIX 3 3 TRP A 56 TYR A 60 5 5 HELIX 4 4 GLU A 74 ASP A 86 1 13 HELIX 5 5 SER A 127 ASP A 129 5 3 HELIX 6 6 ALA A 142 VAL A 145 1 4 HELIX 7 7 ASP A 161 ASP A 176 1 16 HELIX 8 8 ALA A 187 HIS A 189 5 3 HELIX 9 9 PRO A 192 GLY A 201 1 10 HELIX 10 10 THR A 207 TYR A 209 5 3 HELIX 11 11 LYS A 233 TYR A 236 5 4 HELIX 12 12 PHE A 245 GLN A 256 1 12 HELIX 13 13 LEU A 261 ASN A 266 5 6 HELIX 14 14 PRO A 269 TRP A 271 5 3 HELIX 15 15 GLY A 276 ASP A 278 5 3 HELIX 16 16 TYR A 299 ALA A 314 5 16 HELIX 17 17 GLU A 361 ARG A 363 5 3 HELIX 18 18 ARG A 365 VAL A 377 1 13 HELIX 19 19 GLY A 398 GLN A 400 5 3 HELIX 20 20 VAL A 467 ALA A 469 5 3 HELIX 21 21 LYS B 13 ASN B 15 5 3 HELIX 22 22 VAL B 125 ASP B 127 5 3 HELIX 23 23 TYR B 186 SER B 189 5 4 SHEET 1 A 3 GLY A 39 ILE A 42 0 SHEET 2 A 3 ARG A 90 ALA A 95 1 N ARG A 90 O VAL A 40 SHEET 3 A 3 GLY A 181 VAL A 184 1 N GLY A 181 O VAL A 93 SHEET 1 B 3 GLN A 392 ARG A 397 0 SHEET 2 B 3 GLY A 401 THR A 406 -1 N PHE A 405 O ILE A 393 SHEET 3 B 3 LEU A 463 HIS A 466 -1 N ILE A 465 O PHE A 402 SHEET 1 C 4 SER B 5 ILE B 8 0 SHEET 2 C 4 THR B 192 SER B 201 -1 N PHE B 200 O PHE B 6 SHEET 3 C 4 ASP B 63 ARG B 71 -1 N ARG B 71 O THR B 192 SHEET 4 C 4 ALA B 133 THR B 138 -1 N ILE B 137 O THR B 64 SHEET 1 D 2 LEU B 16 GLN B 19 0 SHEET 2 D 2 ARG B 42 TYR B 45 -1 N PHE B 44 O ILE B 17 SHEET 1 E 3 ALA B 22 VAL B 24 0 SHEET 2 E 3 LEU B 30 LEU B 32 -1 N GLN B 31 O THR B 23 SHEET 3 E 3 HIS B 193 VAL B 195 -1 N VAL B 195 O LEU B 30 SHEET 1 F 5 VAL B 175 PHE B 179 0 SHEET 2 F 5 GLY B 81 PRO B 88 -1 N VAL B 87 O SER B 176 SHEET 3 F 5 THR B 97 ASP B 103 -1 N PHE B 102 O LEU B 82 SHEET 4 F 5 ARG B 108 ILE B 111 -1 N SER B 110 O GLU B 101 SHEET 5 F 5 SER B 120 PRO B 122 -1 N VAL B 121 O ILE B 109 SHEET 1 G 2 VAL B 145 SER B 151 0 SHEET 2 G 2 SER B 158 THR B 164 -1 N THR B 163 O PHE B 146 SSBOND 1 CYS A 28 CYS A 84 1555 1555 2.03 SSBOND 2 CYS A 134 CYS A 148 1555 1555 2.04 SSBOND 3 CYS A 354 CYS A 360 1555 1555 2.01 SSBOND 4 CYS A 425 CYS A 437 1555 1555 1.94 LINK C PCA A 1 N LYS A 2 1555 1555 1.33 LINK ND2 ASN B 12 C1 NAG D 1 1555 1555 1.46 LINK ND2 ASN B 65 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK OD1 ASN A 98 CA CA A 500 1555 1555 2.33 LINK O ARG A 146 CA CA A 500 1555 1555 2.20 LINK OD2 ASP A 155 CA CA A 500 1555 1555 2.47 LINK OD1 ASP A 155 CA CA A 500 1555 1555 2.68 LINK O HIS A 189 CA CA A 500 1555 1555 2.66 CISPEP 1 VAL A 123 PRO A 124 0 0.72 SITE 1 CIC 3 ASP A 185 GLU A 222 ASP A 287 CRYST1 168.475 75.911 61.989 90.00 101.29 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005936 0.000000 0.001185 0.00000 SCALE2 0.000000 0.013173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016450 0.00000 HETATM 1 N PCA A 1 28.603 -13.194 5.743 1.00 39.81 N HETATM 2 CA PCA A 1 29.000 -11.791 5.807 1.00 39.81 C HETATM 3 CB PCA A 1 30.339 -12.158 5.405 1.00 71.97 C HETATM 4 CG PCA A 1 29.877 -12.800 4.076 1.00 71.97 C HETATM 5 CD PCA A 1 29.097 -13.992 4.771 1.00 71.97 C HETATM 6 OE PCA A 1 29.118 -15.127 4.279 1.00 71.97 O HETATM 7 C PCA A 1 28.273 -10.897 6.799 1.00 39.81 C HETATM 8 O PCA A 1 28.851 -9.965 7.356 1.00 71.97 O