HEADER UNKNOWN FUNCTION 03-DEC-03 1VJ1 TITLE CRYSTAL STRUCTURE OF PUTATIVE NADPH-DEPENDENT OXIDOREDUCTASE FROM MUS TITLE 2 MUSCULUS AT 2.10 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE NADPH-DEPENDENT OXIDOREDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ZADH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PUTATIVE NADPH-DEPENDENT OXIDOREDUCTASE, STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PSI, PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 1VJ1 1 SEQADV LINK REVDAT 6 13-JUL-11 1VJ1 1 VERSN REVDAT 5 24-FEB-09 1VJ1 1 VERSN REVDAT 4 20-SEP-05 1VJ1 1 JRNL REVDAT 3 18-JAN-05 1VJ1 1 AUTHOR KEYWDS REMARK REVDAT 2 03-AUG-04 1VJ1 1 JRNL TITLE KEYWDS COMPND REVDAT 1 09-DEC-03 1VJ1 0 JRNL AUTH I.LEVIN,R.SCHWARZENBACHER,D.MCMULLAN,P.ABDUBEK,E.AMBING, JRNL AUTH 2 T.BIORAC,J.CAMBELL,J.M.CANAVES,H.J.CHIU,X.DAI,A.M.DEACON, JRNL AUTH 3 M.DIDONATO,M.A.ELSLIGER,A.GODZIK,C.GRITTINI,S.K.GRZECHNIK, JRNL AUTH 4 E.HAMPTON,L.JAROSZEWSKI,C.KARLAK,H.E.KLOCK,E.KOESEMA, JRNL AUTH 5 A.KREUSCH,P.KUHN,S.A.LESLEY,T.M.MCPHILLIPS,M.D.MILLER, JRNL AUTH 6 A.MORSE,K.MOY,J.OUYANG,R.PAGE,K.QUIJANO,R.REYES,A.ROBB, JRNL AUTH 7 E.SIMS,G.SPRAGGON,R.C.STEVENS,H.VAN DEN BEDEM,J.VELASQUEZ, JRNL AUTH 8 J.VINCENT,F.VON DELFT,X.WANG,B.WEST,G.WOLF,Q.XU,K.O.HODGSON, JRNL AUTH 9 J.WOOLEY,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE NADPH-DEPENDENT JRNL TITL 2 OXIDOREDUCTASE (GI: 18204011) FROM MOUSE AT 2.10 A JRNL TITL 3 RESOLUTION JRNL REF PROTEINS V. 56 629 2004 JRNL REFN ISSN 0887-3585 JRNL PMID 15229897 JRNL DOI 10.1002/PROT.20163 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.9999 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 21310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1123 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1211 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2555 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 153 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 41.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : -0.72000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.200 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.520 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2615 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2376 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3540 ; 1.473 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5542 ; 0.824 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 341 ; 6.660 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;42.504 ;25.321 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 442 ;14.852 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;21.759 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 399 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2947 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 491 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 530 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2528 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1630 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 124 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.149 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.297 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.267 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1780 ; 2.368 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 710 ; 0.533 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2693 ; 3.254 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1008 ; 6.205 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 846 ; 7.828 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 131 REMARK 3 RESIDUE RANGE : A 315 A 351 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1800 64.3100 15.4230 REMARK 3 T TENSOR REMARK 3 T11: 0.1940 T22: 0.0816 REMARK 3 T33: 0.0197 T12: 0.0081 REMARK 3 T13: -0.0252 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 1.0267 L22: 3.5314 REMARK 3 L33: 1.9826 L12: 0.3164 REMARK 3 L13: -0.2337 L23: 0.4615 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: -0.0792 S13: 0.0053 REMARK 3 S21: 0.2789 S22: -0.0217 S23: 0.0342 REMARK 3 S31: -0.0426 S32: -0.1305 S33: -0.0091 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 132 A 314 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3540 47.1410 39.4000 REMARK 3 T TENSOR REMARK 3 T11: 0.2070 T22: 0.0971 REMARK 3 T33: 0.1045 T12: -0.0121 REMARK 3 T13: 0.0355 T23: 0.0531 REMARK 3 L TENSOR REMARK 3 L11: 1.3515 L22: 1.8092 REMARK 3 L33: 3.2123 L12: -0.1933 REMARK 3 L13: 1.0833 L23: -0.0665 REMARK 3 S TENSOR REMARK 3 S11: -0.0451 S12: -0.0745 S13: 0.0338 REMARK 3 S21: 0.0493 S22: 0.1324 S23: 0.0278 REMARK 3 S31: -0.1994 S32: -0.1416 S33: -0.0873 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000001912. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950, 0.9793, 0.9567 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22460 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 100.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43100 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRATE PH 5.1, 0.2M NH4OAC, 15% REMARK 280 PEG-4000 , VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE REMARK 280 277K, PH 5.10 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.19300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.28250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.90250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.28250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.19300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.90250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A 254 REMARK 465 GLN A 255 REMARK 465 ILE A 256 REMARK 465 SER A 257 REMARK 465 GLN A 258 REMARK 465 TYR A 259 REMARK 465 ASN A 260 REMARK 465 LYS A 261 REMARK 465 ASP A 262 REMARK 465 VAL A 263 REMARK 465 PRO A 264 REMARK 465 TYR A 265 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 32 CG OD1 OD2 REMARK 470 TYR A 64 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 ASN A 212 CG OD1 ND2 REMARK 470 ARG A 286 CD NE CZ NH1 NH2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 LYS A 320 CE NZ REMARK 470 GLU A 347 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 421 O HOH A 503 2564 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 187 CB CYS A 187 SG -0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 24 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP A 49 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 75 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 230 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 212 53.50 -113.46 REMARK 500 VAL A 232 -158.67 -121.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 354739 RELATED DB: TARGETDB DBREF 1VJ1 A 1 351 UNP Q8VDQ1 ZADH1_MOUSE 1 351 SEQADV 1VJ1 GLY A -10 UNP Q8VDQ1 EXPRESSION TAG SEQADV 1VJ1 SER A -9 UNP Q8VDQ1 EXPRESSION TAG SEQADV 1VJ1 ASP A -8 UNP Q8VDQ1 EXPRESSION TAG SEQADV 1VJ1 LYS A -7 UNP Q8VDQ1 EXPRESSION TAG SEQADV 1VJ1 ILE A -6 UNP Q8VDQ1 EXPRESSION TAG SEQADV 1VJ1 HIS A -5 UNP Q8VDQ1 EXPRESSION TAG SEQADV 1VJ1 HIS A -4 UNP Q8VDQ1 EXPRESSION TAG SEQADV 1VJ1 HIS A -3 UNP Q8VDQ1 EXPRESSION TAG SEQADV 1VJ1 HIS A -2 UNP Q8VDQ1 EXPRESSION TAG SEQADV 1VJ1 HIS A -1 UNP Q8VDQ1 EXPRESSION TAG SEQADV 1VJ1 HIS A 0 UNP Q8VDQ1 EXPRESSION TAG SEQADV 1VJ1 MSE A 1 UNP Q8VDQ1 MET 1 MODIFIED RESIDUE SEQADV 1VJ1 MSE A 52 UNP Q8VDQ1 MET 52 MODIFIED RESIDUE SEQADV 1VJ1 MSE A 56 UNP Q8VDQ1 MET 56 MODIFIED RESIDUE SEQADV 1VJ1 MSE A 135 UNP Q8VDQ1 MET 135 MODIFIED RESIDUE SEQADV 1VJ1 MSE A 158 UNP Q8VDQ1 MET 158 MODIFIED RESIDUE SEQADV 1VJ1 MSE A 244 UNP Q8VDQ1 MET 244 MODIFIED RESIDUE SEQADV 1VJ1 MSE A 325 UNP Q8VDQ1 MET 325 MODIFIED RESIDUE SEQADV 1VJ1 MSE A 332 UNP Q8VDQ1 MET 332 MODIFIED RESIDUE SEQADV 1VJ1 MSE A 333 UNP Q8VDQ1 MET 333 MODIFIED RESIDUE SEQRES 1 A 363 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 363 ILE ILE GLN ARG VAL VAL LEU ASN SER ARG PRO GLY LYS SEQRES 3 A 363 ASN GLY ASN PRO VAL ALA GLU ASN PHE ARG VAL GLU GLU SEQRES 4 A 363 PHE SER LEU LEU ASP ALA LEU ASN GLU GLY GLN VAL GLN SEQRES 5 A 363 VAL ARG THR LEU TYR LEU SER VAL ASP PRO TYR MSE ARG SEQRES 6 A 363 CYS LYS MSE ASN GLU ASP THR GLY THR ASP TYR LEU ALA SEQRES 7 A 363 PRO TRP GLN LEU ALA GLN VAL ALA ASP GLY GLY GLY ILE SEQRES 8 A 363 GLY ILE VAL GLU GLU SER LYS HIS GLN LYS LEU ALA LYS SEQRES 9 A 363 GLY ASP PHE VAL THR SER PHE TYR TRP PRO TRP GLN THR SEQRES 10 A 363 LYS ALA ILE LEU ASP GLY ASN GLY LEU GLU LYS VAL ASP SEQRES 11 A 363 PRO GLN LEU VAL ASP GLY HIS LEU SER TYR PHE LEU GLY SEQRES 12 A 363 ALA ILE GLY MSE PRO GLY LEU THR SER LEU ILE GLY VAL SEQRES 13 A 363 GLN GLU LYS GLY HIS ILE SER ALA GLY SER ASN GLN THR SEQRES 14 A 363 MSE VAL VAL SER GLY ALA ALA GLY ALA CYS GLY SER LEU SEQRES 15 A 363 ALA GLY GLN ILE GLY HIS LEU LEU GLY CYS SER ARG VAL SEQRES 16 A 363 VAL GLY ILE CYS GLY THR GLN GLU LYS CYS LEU PHE LEU SEQRES 17 A 363 THR SER GLU LEU GLY PHE ASP ALA ALA VAL ASN TYR LYS SEQRES 18 A 363 THR GLY ASN VAL ALA GLU GLN LEU ARG GLU ALA CYS PRO SEQRES 19 A 363 GLY GLY VAL ASP VAL TYR PHE ASP ASN VAL GLY GLY ASP SEQRES 20 A 363 ILE SER ASN THR VAL ILE SER GLN MSE ASN GLU ASN SER SEQRES 21 A 363 HIS ILE ILE LEU CYS GLY GLN ILE SER GLN TYR ASN LYS SEQRES 22 A 363 ASP VAL PRO TYR PRO PRO PRO LEU PRO PRO ALA VAL GLU SEQRES 23 A 363 ALA ILE ARG LYS GLU ARG ASN ILE THR ARG GLU ARG PHE SEQRES 24 A 363 THR VAL LEU ASN TYR LYS ASP LYS PHE GLU PRO GLY ILE SEQRES 25 A 363 LEU GLN LEU SER GLN TRP PHE LYS GLU GLY LYS LEU LYS SEQRES 26 A 363 VAL LYS GLU THR VAL ALA LYS GLY LEU GLU ASN MSE GLY SEQRES 27 A 363 VAL ALA PHE GLN SER MSE MSE THR GLY GLY ASN VAL GLY SEQRES 28 A 363 LYS GLN ILE VAL CYS ILE SER GLU ASP SER SER LEU MODRES 1VJ1 MSE A 1 MET SELENOMETHIONINE MODRES 1VJ1 MSE A 52 MET SELENOMETHIONINE MODRES 1VJ1 MSE A 56 MET SELENOMETHIONINE MODRES 1VJ1 MSE A 135 MET SELENOMETHIONINE MODRES 1VJ1 MSE A 158 MET SELENOMETHIONINE MODRES 1VJ1 MSE A 244 MET SELENOMETHIONINE MODRES 1VJ1 MSE A 325 MET SELENOMETHIONINE MODRES 1VJ1 MSE A 332 MET SELENOMETHIONINE MODRES 1VJ1 MSE A 333 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 52 8 HET MSE A 56 8 HET MSE A 135 8 HET MSE A 158 8 HET MSE A 244 8 HET MSE A 325 8 HET MSE A 332 8 HET MSE A 333 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 HOH *153(H2 O) HELIX 1 1 VAL A 19 GLU A 21 5 3 HELIX 2 2 ASP A 49 ASN A 57 5 9 HELIX 3 3 ASN A 112 LEU A 114 5 3 HELIX 4 4 ASP A 118 ASP A 123 5 6 HELIX 5 5 HIS A 125 GLY A 131 5 7 HELIX 6 6 GLY A 134 GLY A 148 1 15 HELIX 7 7 CYS A 167 SER A 169 5 3 HELIX 8 8 LEU A 170 LEU A 178 1 9 HELIX 9 9 THR A 189 LEU A 200 1 12 HELIX 10 10 ASN A 212 CYS A 221 1 10 HELIX 11 11 GLY A 233 SER A 242 1 10 HELIX 12 12 PRO A 270 ARG A 280 1 11 HELIX 13 13 THR A 288 ASP A 294 5 7 HELIX 14 14 LYS A 295 GLU A 309 1 15 HELIX 15 15 ASN A 324 THR A 334 1 11 SHEET 1 A 2 HIS A 0 LEU A 8 0 SHEET 2 A 2 PHE A 23 LEU A 31 -1 O LEU A 30 N MSE A 1 SHEET 1 B 5 LYS A 106 ASP A 110 0 SHEET 2 B 5 GLN A 38 VAL A 48 -1 N VAL A 41 O ALA A 107 SHEET 3 B 5 ASP A 75 SER A 85 -1 O GLU A 83 N GLN A 40 SHEET 4 B 5 PHE A 95 PRO A 102 -1 O TRP A 101 N GLY A 76 SHEET 5 B 5 GLU A 115 VAL A 117 -1 O VAL A 117 N PHE A 95 SHEET 1 C 4 LYS A 106 ASP A 110 0 SHEET 2 C 4 GLN A 38 VAL A 48 -1 N VAL A 41 O ALA A 107 SHEET 3 C 4 LYS A 340 CYS A 344 -1 O VAL A 343 N LEU A 46 SHEET 4 C 4 GLU A 316 LYS A 320 1 N ALA A 319 O CYS A 344 SHEET 1 D 6 ALA A 204 ASN A 207 0 SHEET 2 D 6 ARG A 182 CYS A 187 1 N GLY A 185 O VAL A 206 SHEET 3 D 6 THR A 157 VAL A 160 1 N MSE A 158 O VAL A 184 SHEET 4 D 6 VAL A 225 ASP A 230 1 O PHE A 229 N VAL A 159 SHEET 5 D 6 MSE A 244 LEU A 252 1 O ILE A 251 N TYR A 228 SHEET 6 D 6 THR A 283 ARG A 286 1 O THR A 283 N ILE A 250 LINK C HIS A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N ILE A 2 1555 1555 1.32 LINK C TYR A 51 N MSE A 52 1555 1555 1.32 LINK C MSE A 52 N ARG A 53 1555 1555 1.33 LINK C LYS A 55 N MSE A 56 1555 1555 1.33 LINK C MSE A 56 N ASN A 57 1555 1555 1.33 LINK C GLY A 134 N MSE A 135 1555 1555 1.32 LINK C MSE A 135 N PRO A 136 1555 1555 1.32 LINK C THR A 157 N MSE A 158 1555 1555 1.32 LINK C MSE A 158 N VAL A 159 1555 1555 1.33 LINK C GLN A 243 N MSE A 244 1555 1555 1.34 LINK C MSE A 244 N ASN A 245 1555 1555 1.33 LINK C ASN A 324 N MSE A 325 1555 1555 1.33 LINK C MSE A 325 N GLY A 326 1555 1555 1.33 LINK C SER A 331 N MSE A 332 1555 1555 1.32 LINK C MSE A 332 N MSE A 333 1555 1555 1.33 LINK C MSE A 333 N THR A 334 1555 1555 1.33 CRYST1 42.386 91.805 100.565 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010893 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009944 0.00000