data_1VJG # _entry.id 1VJG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VJG pdb_00001vjg 10.2210/pdb1vjg/pdb RCSB RCSB001917 ? ? WWPDB D_1000001917 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 354318 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1VJG _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2004-02-19 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of putative lipase from the G-D-S-L family from Nostoc sp. at 2.01 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.length_a 56.192 _cell.length_b 56.192 _cell.length_c 129.318 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.entry_id 1VJG _cell.pdbx_unique_axis ? _cell.Z_PDB 6 # _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.entry_id 1VJG _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 154 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'putative lipase from the G-D-S-L family' 25133.396 1 ? ? ? ? 2 water nat water 18.015 92 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MGSDKIHHHHHHMTKQSKTQIRICFVGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDTSSDIAKRWLQEV SLRLHKEYNSLVVFSFGLNDTTLENGKPRVSIAETIKNTREILTQAKKLYPVL(MSE)ISPAPYIEQQDPGRRRRTIDLS QQLALVCQDLDVPYLDVFPLLEKPSVWLHEAKANDGVHPQAGGYTEFARIVENWDAWLNWFR ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMTKQSKTQIRICFVGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDTSSDIAKRWLQEV SLRLHKEYNSLVVFSFGLNDTTLENGKPRVSIAETIKNTREILTQAKKLYPVLMISPAPYIEQQDPGRRRRTIDLSQQLA LVCQDLDVPYLDVFPLLEKPSVWLHEAKANDGVHPQAGGYTEFARIVENWDAWLNWFR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 354318 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MET n 1 14 THR n 1 15 LYS n 1 16 GLN n 1 17 SER n 1 18 LYS n 1 19 THR n 1 20 GLN n 1 21 ILE n 1 22 ARG n 1 23 ILE n 1 24 CYS n 1 25 PHE n 1 26 VAL n 1 27 GLY n 1 28 ASP n 1 29 SER n 1 30 PHE n 1 31 VAL n 1 32 ASN n 1 33 GLY n 1 34 THR n 1 35 GLY n 1 36 ASP n 1 37 PRO n 1 38 GLU n 1 39 CYS n 1 40 LEU n 1 41 GLY n 1 42 TRP n 1 43 THR n 1 44 GLY n 1 45 ARG n 1 46 VAL n 1 47 CYS n 1 48 VAL n 1 49 ASN n 1 50 ALA n 1 51 ASN n 1 52 LYS n 1 53 LYS n 1 54 GLY n 1 55 TYR n 1 56 ASP n 1 57 VAL n 1 58 THR n 1 59 TYR n 1 60 TYR n 1 61 ASN n 1 62 LEU n 1 63 GLY n 1 64 ILE n 1 65 ARG n 1 66 ARG n 1 67 ASP n 1 68 THR n 1 69 SER n 1 70 SER n 1 71 ASP n 1 72 ILE n 1 73 ALA n 1 74 LYS n 1 75 ARG n 1 76 TRP n 1 77 LEU n 1 78 GLN n 1 79 GLU n 1 80 VAL n 1 81 SER n 1 82 LEU n 1 83 ARG n 1 84 LEU n 1 85 HIS n 1 86 LYS n 1 87 GLU n 1 88 TYR n 1 89 ASN n 1 90 SER n 1 91 LEU n 1 92 VAL n 1 93 VAL n 1 94 PHE n 1 95 SER n 1 96 PHE n 1 97 GLY n 1 98 LEU n 1 99 ASN n 1 100 ASP n 1 101 THR n 1 102 THR n 1 103 LEU n 1 104 GLU n 1 105 ASN n 1 106 GLY n 1 107 LYS n 1 108 PRO n 1 109 ARG n 1 110 VAL n 1 111 SER n 1 112 ILE n 1 113 ALA n 1 114 GLU n 1 115 THR n 1 116 ILE n 1 117 LYS n 1 118 ASN n 1 119 THR n 1 120 ARG n 1 121 GLU n 1 122 ILE n 1 123 LEU n 1 124 THR n 1 125 GLN n 1 126 ALA n 1 127 LYS n 1 128 LYS n 1 129 LEU n 1 130 TYR n 1 131 PRO n 1 132 VAL n 1 133 LEU n 1 134 MSE n 1 135 ILE n 1 136 SER n 1 137 PRO n 1 138 ALA n 1 139 PRO n 1 140 TYR n 1 141 ILE n 1 142 GLU n 1 143 GLN n 1 144 GLN n 1 145 ASP n 1 146 PRO n 1 147 GLY n 1 148 ARG n 1 149 ARG n 1 150 ARG n 1 151 ARG n 1 152 THR n 1 153 ILE n 1 154 ASP n 1 155 LEU n 1 156 SER n 1 157 GLN n 1 158 GLN n 1 159 LEU n 1 160 ALA n 1 161 LEU n 1 162 VAL n 1 163 CYS n 1 164 GLN n 1 165 ASP n 1 166 LEU n 1 167 ASP n 1 168 VAL n 1 169 PRO n 1 170 TYR n 1 171 LEU n 1 172 ASP n 1 173 VAL n 1 174 PHE n 1 175 PRO n 1 176 LEU n 1 177 LEU n 1 178 GLU n 1 179 LYS n 1 180 PRO n 1 181 SER n 1 182 VAL n 1 183 TRP n 1 184 LEU n 1 185 HIS n 1 186 GLU n 1 187 ALA n 1 188 LYS n 1 189 ALA n 1 190 ASN n 1 191 ASP n 1 192 GLY n 1 193 VAL n 1 194 HIS n 1 195 PRO n 1 196 GLN n 1 197 ALA n 1 198 GLY n 1 199 GLY n 1 200 TYR n 1 201 THR n 1 202 GLU n 1 203 PHE n 1 204 ALA n 1 205 ARG n 1 206 ILE n 1 207 VAL n 1 208 GLU n 1 209 ASN n 1 210 TRP n 1 211 ASP n 1 212 ALA n 1 213 TRP n 1 214 LEU n 1 215 ASN n 1 216 TRP n 1 217 PHE n 1 218 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Nostoc _entity_src_gen.pdbx_gene_src_gene ALR1529 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'PCC 7120' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Nostoc sp.' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 103690 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8YWS4_ANASP _struct_ref.pdbx_db_accession Q8YWS4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTKQSKTQIRICFVGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDTSSDIAKRWLQEVSLRLHKEYNSLV VFSFGLNDTTLENGKPRVSIAETIKNTREILTQAKKLYPVLMISPAPYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLD VFPLLEKPSVWLHEAKANDGVHPQAGGYTEFARIVENWDAWLNWFR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VJG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 218 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8YWS4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 206 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 206 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VJG MET A 1 ? UNP Q8YWS4 ? ? 'expression tag' -11 1 1 1VJG GLY A 2 ? UNP Q8YWS4 ? ? 'expression tag' -10 2 1 1VJG SER A 3 ? UNP Q8YWS4 ? ? 'expression tag' -9 3 1 1VJG ASP A 4 ? UNP Q8YWS4 ? ? 'expression tag' -8 4 1 1VJG LYS A 5 ? UNP Q8YWS4 ? ? 'expression tag' -7 5 1 1VJG ILE A 6 ? UNP Q8YWS4 ? ? 'expression tag' -6 6 1 1VJG HIS A 7 ? UNP Q8YWS4 ? ? 'expression tag' -5 7 1 1VJG HIS A 8 ? UNP Q8YWS4 ? ? 'expression tag' -4 8 1 1VJG HIS A 9 ? UNP Q8YWS4 ? ? 'expression tag' -3 9 1 1VJG HIS A 10 ? UNP Q8YWS4 ? ? 'expression tag' -2 10 1 1VJG HIS A 11 ? UNP Q8YWS4 ? ? 'expression tag' -1 11 1 1VJG HIS A 12 ? UNP Q8YWS4 ? ? 'expression tag' 0 12 1 1VJG MSE A 134 ? UNP Q8YWS4 MET 122 'modified residue' 122 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1VJG # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 48.97 _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION,SITTING DROP,NANODROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '10% iso-propanol, 20% PEG-4000, 0.1M Sodium HEPES pH 7.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.details ? _diffrn_detector.pdbx_collection_date 2003-07-13 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9801 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.pdbx_wavelength 0.9801 _diffrn_source.pdbx_wavelength_list ? # _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.01 _reflns.d_resolution_low 43.32 _reflns.number_obs 15039 _reflns.percent_possible_obs 90.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 13.0 _reflns.B_iso_Wilson_estimate 57.40 _reflns.pdbx_redundancy 5.6 _reflns.pdbx_Rsym_value 0.07 _reflns.entry_id 1VJG _reflns.number_all ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.01 _reflns_shell.d_res_low 2.12 _reflns_shell.percent_possible_all 65.7 _reflns_shell.pdbx_Rsym_value 0.277 _reflns_shell.pdbx_redundancy 2.8 _reflns_shell.number_unique_all 1526 _reflns_shell.meanI_over_sigI_obs 3.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 2.01 _refine.ls_d_res_low 43.32 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_obs 14261 _refine.ls_number_reflns_R_free 749 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_percent_reflns_obs 90.16 _refine.ls_R_factor_obs 0.17454 _refine.ls_R_factor_R_work 0.17247 _refine.ls_R_factor_R_free 0.21832 _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.B_iso_mean 41.592 _refine.aniso_B[1][1] 1.98 _refine.aniso_B[2][2] 1.98 _refine.aniso_B[3][3] -2.97 _refine.aniso_B[1][2] 0.99 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_overall_ESU_R 0.177 _refine.pdbx_overall_ESU_R_Free 0.161 _refine.overall_SU_ML 0.100 _refine.overall_SU_B 3.678 _refine.correlation_coeff_Fo_to_Fc 0.968 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.entry_id 1VJG _refine.ls_R_factor_all ? _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1611 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 1703 _refine_hist.d_res_high 2.01 _refine_hist.d_res_low 43.32 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1685 0.016 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1513 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2302 1.435 1.935 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3518 0.882 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 210 5.937 5.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 254 0.091 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1887 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 352 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 314 0.210 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1679 0.239 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 968 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 76 0.156 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 9 0.150 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 48 0.297 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 4 0.138 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1017 2.044 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1658 3.649 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 668 5.826 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 639 8.600 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.01 _refine_ls_shell.d_res_low 2.061 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 706 _refine_ls_shell.R_factor_R_work 0.203 _refine_ls_shell.percent_reflns_R_free 5.23 _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.R_factor_R_free 0.222 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1VJG _struct.title 'Crystal structure of a gdsl-like lipase (alr1529) from nostoc sp. pcc 7120 at 2.01 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Putative lipase from the g-d-s-l family, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, hydrolase ; _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.entry_id 1VJG # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 28 ? GLY A 33 ? ASP A 16 GLY A 21 1 ? 6 HELX_P HELX_P2 2 LEU A 40 ? LYS A 53 ? LEU A 28 LYS A 41 1 ? 14 HELX_P HELX_P3 3 THR A 68 ? LEU A 82 ? THR A 56 LEU A 70 1 ? 15 HELX_P HELX_P4 4 GLY A 97 ? THR A 102 ? GLY A 85 THR A 90 1 ? 6 HELX_P HELX_P5 5 SER A 111 ? TYR A 130 ? SER A 99 TYR A 118 1 ? 20 HELX_P HELX_P6 6 GLY A 147 ? ASP A 167 ? GLY A 135 ASP A 155 1 ? 21 HELX_P HELX_P7 7 PHE A 174 ? GLU A 178 ? PHE A 162 GLU A 166 5 ? 5 HELX_P HELX_P8 8 VAL A 182 ? ASN A 190 ? VAL A 170 ASN A 178 1 ? 9 HELX_P HELX_P9 9 GLN A 196 ? ASN A 209 ? GLN A 184 ASN A 197 1 ? 14 HELX_P HELX_P10 10 TRP A 210 ? ASN A 215 ? TRP A 198 ASN A 203 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 133 C ? ? ? 1_555 A MSE 134 N ? ? A LEU 121 A MSE 122 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale2 covale both ? A MSE 134 C ? ? ? 1_555 A ILE 135 N ? ? A MSE 122 A ILE 123 1_555 ? ? ? ? ? ? ? 1.325 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 179 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 167 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 180 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 168 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 10.48 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 55 ? GLY A 63 ? TYR A 43 GLY A 51 A 2 THR A 19 ? GLY A 27 ? THR A 7 GLY A 15 A 3 ASN A 89 ? SER A 95 ? ASN A 77 SER A 83 A 4 VAL A 132 ? ILE A 135 ? VAL A 120 ILE A 123 A 5 TYR A 170 ? LEU A 171 ? TYR A 158 LEU A 159 B 1 LEU A 103 ? GLU A 104 ? LEU A 91 GLU A 92 B 2 LYS A 107 ? PRO A 108 ? LYS A 95 PRO A 96 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 62 ? O LEU A 50 N PHE A 25 ? N PHE A 13 A 2 3 N VAL A 26 ? N VAL A 14 O VAL A 93 ? O VAL A 81 A 3 4 N PHE A 94 ? N PHE A 82 O ILE A 135 ? O ILE A 123 A 4 5 N MSE A 134 ? N MSE A 122 O LEU A 171 ? O LEU A 159 B 1 2 N GLU A 104 ? N GLU A 92 O LYS A 107 ? O LYS A 95 # _atom_sites.entry_id 1VJG _atom_sites.fract_transf_matrix[1][1] 0.017796 _atom_sites.fract_transf_matrix[1][2] 0.010275 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020549 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007733 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 ? ? ? A . n A 1 10 HIS 10 -2 ? ? ? A . n A 1 11 HIS 11 -1 ? ? ? A . n A 1 12 HIS 12 0 ? ? ? A . n A 1 13 MET 13 1 ? ? ? A . n A 1 14 THR 14 2 ? ? ? A . n A 1 15 LYS 15 3 ? ? ? A . n A 1 16 GLN 16 4 ? ? ? A . n A 1 17 SER 17 5 5 SER SER A . n A 1 18 LYS 18 6 6 LYS LYS A . n A 1 19 THR 19 7 7 THR THR A . n A 1 20 GLN 20 8 8 GLN GLN A . n A 1 21 ILE 21 9 9 ILE ILE A . n A 1 22 ARG 22 10 10 ARG ARG A . n A 1 23 ILE 23 11 11 ILE ILE A . n A 1 24 CYS 24 12 12 CYS CYS A . n A 1 25 PHE 25 13 13 PHE PHE A . n A 1 26 VAL 26 14 14 VAL VAL A . n A 1 27 GLY 27 15 15 GLY GLY A . n A 1 28 ASP 28 16 16 ASP ASP A . n A 1 29 SER 29 17 17 SER SER A . n A 1 30 PHE 30 18 18 PHE PHE A . n A 1 31 VAL 31 19 19 VAL VAL A . n A 1 32 ASN 32 20 20 ASN ASN A . n A 1 33 GLY 33 21 21 GLY GLY A . n A 1 34 THR 34 22 22 THR THR A . n A 1 35 GLY 35 23 23 GLY GLY A . n A 1 36 ASP 36 24 24 ASP ASP A . n A 1 37 PRO 37 25 25 PRO PRO A . n A 1 38 GLU 38 26 26 GLU GLU A . n A 1 39 CYS 39 27 27 CYS CYS A . n A 1 40 LEU 40 28 28 LEU LEU A . n A 1 41 GLY 41 29 29 GLY GLY A . n A 1 42 TRP 42 30 30 TRP TRP A . n A 1 43 THR 43 31 31 THR THR A . n A 1 44 GLY 44 32 32 GLY GLY A . n A 1 45 ARG 45 33 33 ARG ARG A . n A 1 46 VAL 46 34 34 VAL VAL A . n A 1 47 CYS 47 35 35 CYS CYS A . n A 1 48 VAL 48 36 36 VAL VAL A . n A 1 49 ASN 49 37 37 ASN ASN A . n A 1 50 ALA 50 38 38 ALA ALA A . n A 1 51 ASN 51 39 39 ASN ASN A . n A 1 52 LYS 52 40 40 LYS LYS A . n A 1 53 LYS 53 41 41 LYS LYS A . n A 1 54 GLY 54 42 42 GLY GLY A . n A 1 55 TYR 55 43 43 TYR TYR A . n A 1 56 ASP 56 44 44 ASP ASP A . n A 1 57 VAL 57 45 45 VAL VAL A . n A 1 58 THR 58 46 46 THR THR A . n A 1 59 TYR 59 47 47 TYR TYR A . n A 1 60 TYR 60 48 48 TYR TYR A . n A 1 61 ASN 61 49 49 ASN ASN A . n A 1 62 LEU 62 50 50 LEU LEU A . n A 1 63 GLY 63 51 51 GLY GLY A . n A 1 64 ILE 64 52 52 ILE ILE A . n A 1 65 ARG 65 53 53 ARG ARG A . n A 1 66 ARG 66 54 54 ARG ARG A . n A 1 67 ASP 67 55 55 ASP ASP A . n A 1 68 THR 68 56 56 THR THR A . n A 1 69 SER 69 57 57 SER SER A . n A 1 70 SER 70 58 58 SER SER A . n A 1 71 ASP 71 59 59 ASP ASP A . n A 1 72 ILE 72 60 60 ILE ILE A . n A 1 73 ALA 73 61 61 ALA ALA A . n A 1 74 LYS 74 62 62 LYS LYS A . n A 1 75 ARG 75 63 63 ARG ARG A . n A 1 76 TRP 76 64 64 TRP TRP A . n A 1 77 LEU 77 65 65 LEU LEU A . n A 1 78 GLN 78 66 66 GLN GLN A . n A 1 79 GLU 79 67 67 GLU GLU A . n A 1 80 VAL 80 68 68 VAL VAL A . n A 1 81 SER 81 69 69 SER SER A . n A 1 82 LEU 82 70 70 LEU LEU A . n A 1 83 ARG 83 71 71 ARG ARG A . n A 1 84 LEU 84 72 72 LEU LEU A . n A 1 85 HIS 85 73 73 HIS HIS A . n A 1 86 LYS 86 74 74 LYS LYS A . n A 1 87 GLU 87 75 75 GLU GLU A . n A 1 88 TYR 88 76 76 TYR TYR A . n A 1 89 ASN 89 77 77 ASN ASN A . n A 1 90 SER 90 78 78 SER SER A . n A 1 91 LEU 91 79 79 LEU LEU A . n A 1 92 VAL 92 80 80 VAL VAL A . n A 1 93 VAL 93 81 81 VAL VAL A . n A 1 94 PHE 94 82 82 PHE PHE A . n A 1 95 SER 95 83 83 SER SER A . n A 1 96 PHE 96 84 84 PHE PHE A . n A 1 97 GLY 97 85 85 GLY GLY A . n A 1 98 LEU 98 86 86 LEU LEU A . n A 1 99 ASN 99 87 87 ASN ASN A . n A 1 100 ASP 100 88 88 ASP ASP A . n A 1 101 THR 101 89 89 THR THR A . n A 1 102 THR 102 90 90 THR THR A . n A 1 103 LEU 103 91 91 LEU LEU A . n A 1 104 GLU 104 92 92 GLU GLU A . n A 1 105 ASN 105 93 93 ASN ASN A . n A 1 106 GLY 106 94 94 GLY GLY A . n A 1 107 LYS 107 95 95 LYS LYS A . n A 1 108 PRO 108 96 96 PRO PRO A . n A 1 109 ARG 109 97 97 ARG ARG A . n A 1 110 VAL 110 98 98 VAL VAL A . n A 1 111 SER 111 99 99 SER SER A . n A 1 112 ILE 112 100 100 ILE ILE A . n A 1 113 ALA 113 101 101 ALA ALA A . n A 1 114 GLU 114 102 102 GLU GLU A . n A 1 115 THR 115 103 103 THR THR A . n A 1 116 ILE 116 104 104 ILE ILE A . n A 1 117 LYS 117 105 105 LYS LYS A . n A 1 118 ASN 118 106 106 ASN ASN A . n A 1 119 THR 119 107 107 THR THR A . n A 1 120 ARG 120 108 108 ARG ARG A . n A 1 121 GLU 121 109 109 GLU GLU A . n A 1 122 ILE 122 110 110 ILE ILE A . n A 1 123 LEU 123 111 111 LEU LEU A . n A 1 124 THR 124 112 112 THR THR A . n A 1 125 GLN 125 113 113 GLN GLN A . n A 1 126 ALA 126 114 114 ALA ALA A . n A 1 127 LYS 127 115 115 LYS LYS A . n A 1 128 LYS 128 116 116 LYS LYS A . n A 1 129 LEU 129 117 117 LEU LEU A . n A 1 130 TYR 130 118 118 TYR TYR A . n A 1 131 PRO 131 119 119 PRO PRO A . n A 1 132 VAL 132 120 120 VAL VAL A . n A 1 133 LEU 133 121 121 LEU LEU A . n A 1 134 MSE 134 122 122 MSE MSE A . n A 1 135 ILE 135 123 123 ILE ILE A . n A 1 136 SER 136 124 124 SER SER A . n A 1 137 PRO 137 125 125 PRO PRO A . n A 1 138 ALA 138 126 126 ALA ALA A . n A 1 139 PRO 139 127 127 PRO PRO A . n A 1 140 TYR 140 128 128 TYR TYR A . n A 1 141 ILE 141 129 129 ILE ILE A . n A 1 142 GLU 142 130 130 GLU GLU A . n A 1 143 GLN 143 131 131 GLN GLN A . n A 1 144 GLN 144 132 132 GLN GLN A . n A 1 145 ASP 145 133 133 ASP ASP A . n A 1 146 PRO 146 134 134 PRO PRO A . n A 1 147 GLY 147 135 135 GLY GLY A . n A 1 148 ARG 148 136 136 ARG ARG A . n A 1 149 ARG 149 137 137 ARG ARG A . n A 1 150 ARG 150 138 138 ARG ARG A . n A 1 151 ARG 151 139 139 ARG ARG A . n A 1 152 THR 152 140 140 THR THR A . n A 1 153 ILE 153 141 141 ILE ILE A . n A 1 154 ASP 154 142 142 ASP ASP A . n A 1 155 LEU 155 143 143 LEU LEU A . n A 1 156 SER 156 144 144 SER SER A . n A 1 157 GLN 157 145 145 GLN GLN A . n A 1 158 GLN 158 146 146 GLN GLN A . n A 1 159 LEU 159 147 147 LEU LEU A . n A 1 160 ALA 160 148 148 ALA ALA A . n A 1 161 LEU 161 149 149 LEU LEU A . n A 1 162 VAL 162 150 150 VAL VAL A . n A 1 163 CYS 163 151 151 CYS CYS A . n A 1 164 GLN 164 152 152 GLN GLN A . n A 1 165 ASP 165 153 153 ASP ASP A . n A 1 166 LEU 166 154 154 LEU LEU A . n A 1 167 ASP 167 155 155 ASP ASP A . n A 1 168 VAL 168 156 156 VAL VAL A . n A 1 169 PRO 169 157 157 PRO PRO A . n A 1 170 TYR 170 158 158 TYR TYR A . n A 1 171 LEU 171 159 159 LEU LEU A . n A 1 172 ASP 172 160 160 ASP ASP A . n A 1 173 VAL 173 161 161 VAL VAL A . n A 1 174 PHE 174 162 162 PHE PHE A . n A 1 175 PRO 175 163 163 PRO PRO A . n A 1 176 LEU 176 164 164 LEU LEU A . n A 1 177 LEU 177 165 165 LEU LEU A . n A 1 178 GLU 178 166 166 GLU GLU A . n A 1 179 LYS 179 167 167 LYS LYS A . n A 1 180 PRO 180 168 168 PRO PRO A . n A 1 181 SER 181 169 169 SER SER A . n A 1 182 VAL 182 170 170 VAL VAL A . n A 1 183 TRP 183 171 171 TRP TRP A . n A 1 184 LEU 184 172 172 LEU LEU A . n A 1 185 HIS 185 173 173 HIS HIS A . n A 1 186 GLU 186 174 174 GLU GLU A . n A 1 187 ALA 187 175 175 ALA ALA A . n A 1 188 LYS 188 176 176 LYS LYS A . n A 1 189 ALA 189 177 177 ALA ALA A . n A 1 190 ASN 190 178 178 ASN ASN A . n A 1 191 ASP 191 179 179 ASP ASP A . n A 1 192 GLY 192 180 180 GLY GLY A . n A 1 193 VAL 193 181 181 VAL VAL A . n A 1 194 HIS 194 182 182 HIS HIS A . n A 1 195 PRO 195 183 183 PRO PRO A . n A 1 196 GLN 196 184 184 GLN GLN A . n A 1 197 ALA 197 185 185 ALA ALA A . n A 1 198 GLY 198 186 186 GLY GLY A . n A 1 199 GLY 199 187 187 GLY GLY A . n A 1 200 TYR 200 188 188 TYR TYR A . n A 1 201 THR 201 189 189 THR THR A . n A 1 202 GLU 202 190 190 GLU GLU A . n A 1 203 PHE 203 191 191 PHE PHE A . n A 1 204 ALA 204 192 192 ALA ALA A . n A 1 205 ARG 205 193 193 ARG ARG A . n A 1 206 ILE 206 194 194 ILE ILE A . n A 1 207 VAL 207 195 195 VAL VAL A . n A 1 208 GLU 208 196 196 GLU GLU A . n A 1 209 ASN 209 197 197 ASN ASN A . n A 1 210 TRP 210 198 198 TRP TRP A . n A 1 211 ASP 211 199 199 ASP ASP A . n A 1 212 ALA 212 200 200 ALA ALA A . n A 1 213 TRP 213 201 201 TRP TRP A . n A 1 214 LEU 214 202 202 LEU LEU A . n A 1 215 ASN 215 203 203 ASN ASN A . n A 1 216 TRP 216 204 204 TRP TRP A . n A 1 217 PHE 217 205 205 PHE PHE A . n A 1 218 ARG 218 206 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 207 1 HOH HOH A . B 2 HOH 2 208 2 HOH HOH A . B 2 HOH 3 209 3 HOH HOH A . B 2 HOH 4 210 4 HOH HOH A . B 2 HOH 5 211 5 HOH HOH A . B 2 HOH 6 212 6 HOH HOH A . B 2 HOH 7 213 7 HOH HOH A . B 2 HOH 8 214 8 HOH HOH A . B 2 HOH 9 215 9 HOH HOH A . B 2 HOH 10 216 10 HOH HOH A . B 2 HOH 11 217 11 HOH HOH A . B 2 HOH 12 218 12 HOH HOH A . B 2 HOH 13 219 13 HOH HOH A . B 2 HOH 14 220 14 HOH HOH A . B 2 HOH 15 221 15 HOH HOH A . B 2 HOH 16 222 16 HOH HOH A . B 2 HOH 17 223 17 HOH HOH A . B 2 HOH 18 224 18 HOH HOH A . B 2 HOH 19 225 19 HOH HOH A . B 2 HOH 20 226 20 HOH HOH A . B 2 HOH 21 227 21 HOH HOH A . B 2 HOH 22 228 22 HOH HOH A . B 2 HOH 23 229 23 HOH HOH A . B 2 HOH 24 230 24 HOH HOH A . B 2 HOH 25 231 25 HOH HOH A . B 2 HOH 26 232 26 HOH HOH A . B 2 HOH 27 233 27 HOH HOH A . B 2 HOH 28 234 28 HOH HOH A . B 2 HOH 29 235 29 HOH HOH A . B 2 HOH 30 236 30 HOH HOH A . B 2 HOH 31 237 31 HOH HOH A . B 2 HOH 32 238 32 HOH HOH A . B 2 HOH 33 239 33 HOH HOH A . B 2 HOH 34 240 34 HOH HOH A . B 2 HOH 35 241 35 HOH HOH A . B 2 HOH 36 242 36 HOH HOH A . B 2 HOH 37 243 37 HOH HOH A . B 2 HOH 38 244 38 HOH HOH A . B 2 HOH 39 245 39 HOH HOH A . B 2 HOH 40 246 40 HOH HOH A . B 2 HOH 41 247 41 HOH HOH A . B 2 HOH 42 248 42 HOH HOH A . B 2 HOH 43 249 43 HOH HOH A . B 2 HOH 44 250 44 HOH HOH A . B 2 HOH 45 251 45 HOH HOH A . B 2 HOH 46 252 46 HOH HOH A . B 2 HOH 47 253 47 HOH HOH A . B 2 HOH 48 254 48 HOH HOH A . B 2 HOH 49 255 49 HOH HOH A . B 2 HOH 50 256 50 HOH HOH A . B 2 HOH 51 257 51 HOH HOH A . B 2 HOH 52 258 52 HOH HOH A . B 2 HOH 53 259 53 HOH HOH A . B 2 HOH 54 260 54 HOH HOH A . B 2 HOH 55 261 55 HOH HOH A . B 2 HOH 56 262 56 HOH HOH A . B 2 HOH 57 263 57 HOH HOH A . B 2 HOH 58 264 58 HOH HOH A . B 2 HOH 59 265 59 HOH HOH A . B 2 HOH 60 266 60 HOH HOH A . B 2 HOH 61 267 61 HOH HOH A . B 2 HOH 62 268 62 HOH HOH A . B 2 HOH 63 269 63 HOH HOH A . B 2 HOH 64 270 64 HOH HOH A . B 2 HOH 65 271 65 HOH HOH A . B 2 HOH 66 272 66 HOH HOH A . B 2 HOH 67 273 67 HOH HOH A . B 2 HOH 68 274 68 HOH HOH A . B 2 HOH 69 275 69 HOH HOH A . B 2 HOH 70 276 70 HOH HOH A . B 2 HOH 71 277 71 HOH HOH A . B 2 HOH 72 278 72 HOH HOH A . B 2 HOH 73 279 73 HOH HOH A . B 2 HOH 74 280 74 HOH HOH A . B 2 HOH 75 281 75 HOH HOH A . B 2 HOH 76 282 76 HOH HOH A . B 2 HOH 77 283 77 HOH HOH A . B 2 HOH 78 284 78 HOH HOH A . B 2 HOH 79 285 79 HOH HOH A . B 2 HOH 80 286 80 HOH HOH A . B 2 HOH 81 287 81 HOH HOH A . B 2 HOH 82 288 82 HOH HOH A . B 2 HOH 83 289 83 HOH HOH A . B 2 HOH 84 290 84 HOH HOH A . B 2 HOH 85 291 85 HOH HOH A . B 2 HOH 86 292 87 HOH HOH A . B 2 HOH 87 293 88 HOH HOH A . B 2 HOH 88 294 89 HOH HOH A . B 2 HOH 89 295 90 HOH HOH A . B 2 HOH 90 296 91 HOH HOH A . B 2 HOH 91 297 92 HOH HOH A . B 2 HOH 92 298 93 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 134 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 122 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 97.3273989789 0.0000000000 0.0000000000 -1.0000000000 43.1060000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-03-16 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details . _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 1.6600 _pdbx_refine_tls.origin_y 36.0850 _pdbx_refine_tls.origin_z 16.3520 _pdbx_refine_tls.T[1][1] 0.0397 _pdbx_refine_tls.T[2][2] 0.1226 _pdbx_refine_tls.T[3][3] 0.0042 _pdbx_refine_tls.T[1][2] 0.0169 _pdbx_refine_tls.T[1][3] -0.0072 _pdbx_refine_tls.T[2][3] 0.0083 _pdbx_refine_tls.L[1][1] 0.7576 _pdbx_refine_tls.L[2][2] 1.4352 _pdbx_refine_tls.L[3][3] 2.7323 _pdbx_refine_tls.L[1][2] -0.1702 _pdbx_refine_tls.L[1][3] 0.2178 _pdbx_refine_tls.L[2][3] 0.7349 _pdbx_refine_tls.S[1][1] 0.0620 _pdbx_refine_tls.S[2][2] -0.1153 _pdbx_refine_tls.S[3][3] 0.0533 _pdbx_refine_tls.S[1][2] -0.0223 _pdbx_refine_tls.S[1][3] -0.1029 _pdbx_refine_tls.S[2][3] 0.0556 _pdbx_refine_tls.S[2][1] 0.0162 _pdbx_refine_tls.S[3][1] 0.3057 _pdbx_refine_tls.S[3][2] 0.0022 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 17 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 217 _pdbx_refine_tls_group.selection ALL _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 5 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 205 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' '4.2)' ? 2 MOLREP phasing . ? 3 REFMAC refinement 5.1.24 ? 4 CCP4 'data scaling' '(SCALA)' ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 179 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 179 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 179 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.95 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 5.65 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 16 ? ? -111.52 -151.78 2 1 ASN A 178 ? ? -105.28 -105.30 3 1 VAL A 181 ? ? -121.38 -52.19 4 1 GLN A 184 ? ? -125.38 -148.72 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 95 ? CE ? A LYS 107 CE 2 1 Y 1 A LYS 95 ? NZ ? A LYS 107 NZ 3 1 Y 1 A GLU 109 ? CD ? A GLU 121 CD 4 1 Y 1 A GLU 109 ? OE1 ? A GLU 121 OE1 5 1 Y 1 A GLU 109 ? OE2 ? A GLU 121 OE2 6 1 Y 1 A LYS 115 ? CE ? A LYS 127 CE 7 1 Y 1 A LYS 115 ? NZ ? A LYS 127 NZ 8 1 Y 1 A LYS 167 ? CE ? A LYS 179 CE 9 1 Y 1 A LYS 167 ? NZ ? A LYS 179 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -11 ? A MET 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A HIS -3 ? A HIS 9 10 1 Y 1 A HIS -2 ? A HIS 10 11 1 Y 1 A HIS -1 ? A HIS 11 12 1 Y 1 A HIS 0 ? A HIS 12 13 1 Y 1 A MET 1 ? A MET 13 14 1 Y 1 A THR 2 ? A THR 14 15 1 Y 1 A LYS 3 ? A LYS 15 16 1 Y 1 A GLN 4 ? A GLN 16 17 1 Y 1 A ARG 206 ? A ARG 218 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #