HEADER HYDROLASE 22-MAR-04 1VJR TITLE CRYSTAL STRUCTURE OF 4-NITROPHENYLPHOSPHATASE (TM1742) FROM THERMOTOGA TITLE 2 MARITIMA AT 2.40 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-NITROPHENYLPHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.3.41; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM1742; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM1742, 4-NITROPHENYLPHOSPHATASE, STRUCTURAL GENOMICS, JCSG, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 1VJR 1 REMARK SEQADV LINK REVDAT 6 13-JUL-11 1VJR 1 VERSN REVDAT 5 24-FEB-09 1VJR 1 VERSN REVDAT 4 28-MAR-06 1VJR 1 JRNL REVDAT 3 18-JAN-05 1VJR 1 AUTHOR KEYWDS REMARK REVDAT 2 10-AUG-04 1VJR 1 HEADER TITLE COMPND JRNL REVDAT 2 2 1 KEYWDS REVDAT 1 30-MAR-04 1VJR 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF 4-NITROPHENYLPHOSPHATASE (TM1742) FROM JRNL TITL 2 THERMOTOGA MARITIMA AT 2.40 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0000 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1485 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1955 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2030 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 279 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 57.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.56000 REMARK 3 B22 (A**2) : 1.56000 REMARK 3 B33 (A**2) : -3.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.955 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2130 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2889 ; 1.427 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 275 ; 5.828 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;36.945 ;24.479 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 393 ;14.025 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.771 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1607 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 989 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 167 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.145 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.087 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1357 ; 2.080 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2149 ; 3.092 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 848 ; 6.486 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 732 ; 8.850 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 72 REMARK 3 RESIDUE RANGE : A 183 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): 89.9930 59.6460 21.6200 REMARK 3 T TENSOR REMARK 3 T11: -0.0568 T22: 0.0101 REMARK 3 T33: -0.0686 T12: -0.0392 REMARK 3 T13: 0.0073 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 2.2399 L22: 2.5158 REMARK 3 L33: 3.3699 L12: 0.5936 REMARK 3 L13: -0.8810 L23: -1.4812 REMARK 3 S TENSOR REMARK 3 S11: 0.0751 S12: -0.1930 S13: -0.1300 REMARK 3 S21: 0.0875 S22: -0.0710 S23: -0.1962 REMARK 3 S31: -0.0217 S32: 0.4375 S33: -0.0042 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): 88.2530 69.9990 -1.5860 REMARK 3 T TENSOR REMARK 3 T11: -0.0133 T22: -0.0301 REMARK 3 T33: -0.0738 T12: -0.0675 REMARK 3 T13: 0.0689 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 2.1910 L22: 2.1412 REMARK 3 L33: 1.3653 L12: -0.9504 REMARK 3 L13: -0.3542 L23: -0.0535 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: 0.0442 S13: -0.0351 REMARK 3 S21: -0.1267 S22: -0.0632 S23: -0.1115 REMARK 3 S31: 0.1106 S32: 0.0874 S33: 0.0410 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000001928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797, 0.9999, 0.9799 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28916 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 94.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53700 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM CHLORIDE, 0.1M MES PH 6.5, REMARK 280 0.1M SODIUM DIHYDROGEN PHOSPHATE, 0.1M POTASSIUM DIHYDROGEN REMARK 280 PHOSPHATE, VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE REMARK 280 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.18250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.99900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.99900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.09125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.99900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.99900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 120.27375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.99900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.99900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.09125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.99900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.99900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 120.27375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.18250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 N CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 4 CE NZ REMARK 470 LYS A 155 CE NZ REMARK 470 GLU A 194 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 20 O HOH A 520 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 20 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 53 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 178 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 12 -90.20 -102.14 REMARK 500 THR A 15 -56.45 -120.36 REMARK 500 ASP A 19 -104.12 73.11 REMARK 500 ASP A 161 -164.41 -126.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 260 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 0 NE2 REMARK 620 2 HIS A 80 NE2 99.5 REMARK 620 3 CL A 261 CL 113.6 120.3 REMARK 620 4 CL A 262 CL 106.1 101.7 113.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 262 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 283597 RELATED DB: TARGETDB REMARK 900 RELATED ID: 356069 RELATED DB: TARGETDB REMARK 900 RELATED ID: 356070 RELATED DB: TARGETDB REMARK 900 RELATED ID: 356071 RELATED DB: TARGETDB REMARK 900 RELATED ID: 356077 RELATED DB: TARGETDB REMARK 900 RELATED ID: 356253 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 FOR THE VAL/MET CONFLICT AT RESIDUE 1: REMARK 999 THIS GENE USES AN ALTERNATE INITIATION CODON REMARK 999 THAT RESULTS IN A VALINE AT POSITION 1 WHEN REMARK 999 EXPRESSED AS A FUSION. DBREF 1VJR A 1 259 UNP Q9X264 Q9X264_THEMA 1 259 SEQADV 1VJR MET A -11 UNP Q9X264 EXPRESSION TAG SEQADV 1VJR GLY A -10 UNP Q9X264 EXPRESSION TAG SEQADV 1VJR SER A -9 UNP Q9X264 EXPRESSION TAG SEQADV 1VJR ASP A -8 UNP Q9X264 EXPRESSION TAG SEQADV 1VJR LYS A -7 UNP Q9X264 EXPRESSION TAG SEQADV 1VJR ILE A -6 UNP Q9X264 EXPRESSION TAG SEQADV 1VJR HIS A -5 UNP Q9X264 EXPRESSION TAG SEQADV 1VJR HIS A -4 UNP Q9X264 EXPRESSION TAG SEQADV 1VJR HIS A -3 UNP Q9X264 EXPRESSION TAG SEQADV 1VJR HIS A -2 UNP Q9X264 EXPRESSION TAG SEQADV 1VJR HIS A -1 UNP Q9X264 EXPRESSION TAG SEQADV 1VJR HIS A 0 UNP Q9X264 EXPRESSION TAG SEQADV 1VJR VAL A 1 UNP Q9X264 MET 1 SEE REMARK 999 SEQADV 1VJR MSE A 12 UNP Q9X264 MET 12 MODIFIED RESIDUE SEQADV 1VJR MSE A 61 UNP Q9X264 MET 61 MODIFIED RESIDUE SEQADV 1VJR MSE A 81 UNP Q9X264 MET 81 MODIFIED RESIDUE SEQADV 1VJR MSE A 166 UNP Q9X264 MET 166 MODIFIED RESIDUE SEQADV 1VJR MSE A 203 UNP Q9X264 MET 203 MODIFIED RESIDUE SEQADV 1VJR MSE A 205 UNP Q9X264 MET 205 MODIFIED RESIDUE SEQRES 1 A 271 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS VAL SEQRES 2 A 271 LEU ASP LYS ILE GLU LEU PHE ILE LEU ASP MSE ASP GLY SEQRES 3 A 271 THR PHE TYR LEU ASP ASP SER LEU LEU PRO GLY SER LEU SEQRES 4 A 271 GLU PHE LEU GLU THR LEU LYS GLU LYS ASN LYS ARG PHE SEQRES 5 A 271 VAL PHE PHE THR ASN ASN SER SER LEU GLY ALA GLN ASP SEQRES 6 A 271 TYR VAL ARG LYS LEU ARG ASN MSE GLY VAL ASP VAL PRO SEQRES 7 A 271 ASP ASP ALA VAL VAL THR SER GLY GLU ILE THR ALA GLU SEQRES 8 A 271 HIS MSE LEU LYS ARG PHE GLY ARG CYS ARG ILE PHE LEU SEQRES 9 A 271 LEU GLY THR PRO GLN LEU LYS LYS VAL PHE GLU ALA TYR SEQRES 10 A 271 GLY HIS VAL ILE ASP GLU GLU ASN PRO ASP PHE VAL VAL SEQRES 11 A 271 LEU GLY PHE ASP LYS THR LEU THR TYR GLU ARG LEU LYS SEQRES 12 A 271 LYS ALA CYS ILE LEU LEU ARG LYS GLY LYS PHE TYR ILE SEQRES 13 A 271 ALA THR HIS PRO ASP ILE ASN CYS PRO SER LYS GLU GLY SEQRES 14 A 271 PRO VAL PRO ASP ALA GLY SER ILE MSE ALA ALA ILE GLU SEQRES 15 A 271 ALA SER THR GLY ARG LYS PRO ASP LEU ILE ALA GLY LYS SEQRES 16 A 271 PRO ASN PRO LEU VAL VAL ASP VAL ILE SER GLU LYS PHE SEQRES 17 A 271 GLY VAL PRO LYS GLU ARG MSE ALA MSE VAL GLY ASP ARG SEQRES 18 A 271 LEU TYR THR ASP VAL LYS LEU GLY LYS ASN ALA GLY ILE SEQRES 19 A 271 VAL SER ILE LEU VAL LEU THR GLY GLU THR THR PRO GLU SEQRES 20 A 271 ASP LEU GLU ARG ALA GLU THR LYS PRO ASP PHE VAL PHE SEQRES 21 A 271 LYS ASN LEU GLY GLU LEU ALA LYS ALA VAL GLN MODRES 1VJR MSE A 12 MET SELENOMETHIONINE MODRES 1VJR MSE A 61 MET SELENOMETHIONINE MODRES 1VJR MSE A 81 MET SELENOMETHIONINE MODRES 1VJR MSE A 166 MET SELENOMETHIONINE MODRES 1VJR MSE A 203 MET SELENOMETHIONINE MODRES 1VJR MSE A 205 MET SELENOMETHIONINE HET MSE A 12 8 HET MSE A 61 8 HET MSE A 81 8 HET MSE A 166 8 HET MSE A 203 8 HET MSE A 205 8 HET NI A 260 1 HET CL A 261 1 HET CL A 262 1 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 NI NI 2+ FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *279(H2 O) HELIX 1 1 HIS A 0 ILE A 5 5 6 HELIX 2 2 GLY A 25 LYS A 36 1 12 HELIX 3 3 GLY A 50 MSE A 61 1 12 HELIX 4 4 PRO A 66 ASP A 68 5 3 HELIX 5 5 SER A 73 GLY A 86 1 14 HELIX 6 6 THR A 95 TYR A 105 1 11 HELIX 7 7 THR A 126 ARG A 138 1 13 HELIX 8 8 ASP A 161 GLY A 174 1 14 HELIX 9 9 PRO A 186 GLY A 197 1 12 HELIX 10 10 PRO A 199 GLU A 201 5 3 HELIX 11 11 ARG A 209 GLY A 221 1 13 HELIX 12 12 THR A 233 ALA A 240 1 8 HELIX 13 13 ASN A 250 GLN A 259 1 10 SHEET 1 A 6 VAL A 70 THR A 72 0 SHEET 2 A 6 ARG A 39 THR A 44 1 N PHE A 42 O VAL A 71 SHEET 3 A 6 LEU A 7 LEU A 10 1 N LEU A 10 O VAL A 41 SHEET 4 A 6 MSE A 203 GLY A 207 1 O VAL A 206 N ILE A 9 SHEET 5 A 6 VAL A 223 VAL A 227 1 O ILE A 225 N MSE A 205 SHEET 6 A 6 PHE A 246 PHE A 248 1 O PHE A 246 N LEU A 226 SHEET 1 B 2 TYR A 17 LEU A 18 0 SHEET 2 B 2 SER A 21 LEU A 22 -1 O SER A 21 N LEU A 18 SHEET 1 C 5 VAL A 108 ILE A 109 0 SHEET 2 C 5 ARG A 89 LEU A 93 1 N ILE A 90 O VAL A 108 SHEET 3 C 5 PHE A 116 LEU A 119 1 O VAL A 118 N PHE A 91 SHEET 4 C 5 PHE A 142 ALA A 145 1 O ILE A 144 N LEU A 119 SHEET 5 C 5 LEU A 179 ILE A 180 1 O LEU A 179 N ALA A 145 SHEET 1 D 2 ASN A 151 CYS A 152 0 SHEET 2 D 2 VAL A 159 PRO A 160 -1 O VAL A 159 N CYS A 152 LINK C ASP A 11 N MSE A 12 1555 1555 1.33 LINK C MSE A 12 N ASP A 13 1555 1555 1.33 LINK C ASN A 60 N MSE A 61 1555 1555 1.33 LINK C MSE A 61 N GLY A 62 1555 1555 1.33 LINK C HIS A 80 N MSE A 81 1555 1555 1.33 LINK C MSE A 81 N LEU A 82 1555 1555 1.34 LINK C ILE A 165 N MSE A 166 1555 1555 1.34 LINK C MSE A 166 N ALA A 167 1555 1555 1.33 LINK C ARG A 202 N MSE A 203 1555 1555 1.34 LINK C MSE A 203 N ALA A 204 1555 1555 1.33 LINK C ALA A 204 N MSE A 205 1555 1555 1.33 LINK C MSE A 205 N VAL A 206 1555 1555 1.32 LINK NE2 HIS A 0 NI NI A 260 1555 1555 2.17 LINK NE2 HIS A 80 NI NI A 260 3645 1555 2.14 LINK NI NI A 260 CL CL A 261 1555 1555 2.19 LINK NI NI A 260 CL CL A 262 1555 1555 2.60 CISPEP 1 LYS A 183 PRO A 184 0 3.57 SITE 1 AC1 4 HIS A 0 HIS A 80 CL A 261 CL A 262 SITE 1 AC2 2 HIS A 0 NI A 260 SITE 1 AC3 2 HIS A 80 NI A 260 CRYST1 93.998 93.998 160.365 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010639 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006236 0.00000