HEADER HYDROLASE 22-MAR-04 1VJT TITLE CRYSTAL STRUCTURE OF ALPHA-GLUCOSIDASE (TM0752) FROM THERMOTOGA TITLE 2 MARITIMA AT 2.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.139; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM0752; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM0752, ALPHA-GLUCOSIDASE, STRUCTURAL GENOMICS, JCSG, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 06-NOV-24 1VJT 1 REMARK REVDAT 7 25-JAN-23 1VJT 1 REMARK SEQADV LINK REVDAT 6 13-JUL-11 1VJT 1 VERSN REVDAT 5 24-FEB-09 1VJT 1 VERSN REVDAT 4 28-MAR-06 1VJT 1 JRNL REVDAT 3 18-JAN-05 1VJT 1 AUTHOR KEYWDS REMARK REVDAT 2 10-AUG-04 1VJT 1 HEADER TITLE COMPND KEYWDS REVDAT 2 2 1 JRNL REVDAT 1 30-MAR-04 1VJT 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF ALPHA-GLUCOSIDASE (TM0752) FROM JRNL TITL 2 THERMOTOGA MARITIMA AT 2.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0001 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 83.3 REMARK 3 NUMBER OF REFLECTIONS : 14406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 754 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 512 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 19 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3872 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 44.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.18000 REMARK 3 B22 (A**2) : -0.33000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.36000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.362 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.237 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.539 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4018 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3595 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5451 ; 1.171 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8355 ; 0.804 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 470 ; 5.525 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;39.312 ;23.582 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 698 ;17.788 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;20.348 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 574 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4410 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 839 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 874 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3685 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2338 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 107 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.228 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.269 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.283 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2546 ; 0.570 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 946 ; 0.082 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3812 ; 0.816 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1881 ; 1.104 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1639 ; 1.702 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 469 REMARK 3 ORIGIN FOR THE GROUP (A): 59.5753 9.3396 21.7988 REMARK 3 T TENSOR REMARK 3 T11: -0.0468 T22: -0.0221 REMARK 3 T33: -0.0112 T12: -0.0034 REMARK 3 T13: -0.0251 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.2988 L22: 0.9307 REMARK 3 L33: 1.2814 L12: -0.1978 REMARK 3 L13: -0.0578 L23: -0.2684 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: 0.1826 S13: -0.0399 REMARK 3 S21: -0.1821 S22: 0.0214 S23: 0.0420 REMARK 3 S31: 0.0202 S32: -0.0437 S33: -0.0281 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS 2. THE NICOTINAMIDE MOIETY OF NAD WAS NOT REMARK 3 VISIBLE IN THE DENSITY. 3. RESIDUAL POSITIVE DIFFERENCE DENSITY REMARK 3 LIES CLOSE TO THE SIDECHAINS OF THE ACTIVE SITE RESIDUES SER10 REMARK 3 AND PHE13. REMARK 4 REMARK 4 1VJT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000001929. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000, 0.979340, 0.979206 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15162 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.3 REMARK 200 DATA REDUNDANCY : 3.120 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 42.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.03 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSHARP, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M TRI-LITHIUM CITRATE TETRAHYDRATE, REMARK 280 20% PEG-3350, PH 8.1, VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.86100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.90750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.86100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.90750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 132.90894 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.27552 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 LYS A 470 REMARK 465 LEU A 471 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 GLU A 222 CD OE1 OE2 REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 LYS A 289 CE NZ REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 ASP A 399 CG OD1 OD2 REMARK 470 GLU A 461 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 116 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 10 73.89 -68.77 REMARK 500 SER A 94 140.91 -173.58 REMARK 500 ASN A 121 88.38 -160.13 REMARK 500 LEU A 130 -57.42 66.22 REMARK 500 ALA A 150 63.59 -151.18 REMARK 500 ASN A 271 55.90 -98.63 REMARK 500 ASN A 323 79.99 -117.05 REMARK 500 TYR A 408 -65.20 -107.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE NICOTINAMIDE MOIETY OF NAD WAS NOT REMARK 600 VISIBLE IN THE DENSITY. REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAD A 500 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282622 RELATED DB: TARGETDB DBREF 1VJT A 1 471 UNP Q9WZL1 Q9WZL1_THEMA 1 471 SEQADV 1VJT MET A -11 UNP Q9WZL1 EXPRESSION TAG SEQADV 1VJT GLY A -10 UNP Q9WZL1 EXPRESSION TAG SEQADV 1VJT SER A -9 UNP Q9WZL1 EXPRESSION TAG SEQADV 1VJT ASP A -8 UNP Q9WZL1 EXPRESSION TAG SEQADV 1VJT LYS A -7 UNP Q9WZL1 EXPRESSION TAG SEQADV 1VJT ILE A -6 UNP Q9WZL1 EXPRESSION TAG SEQADV 1VJT HIS A -5 UNP Q9WZL1 EXPRESSION TAG SEQADV 1VJT HIS A -4 UNP Q9WZL1 EXPRESSION TAG SEQADV 1VJT HIS A -3 UNP Q9WZL1 EXPRESSION TAG SEQADV 1VJT HIS A -2 UNP Q9WZL1 EXPRESSION TAG SEQADV 1VJT HIS A -1 UNP Q9WZL1 EXPRESSION TAG SEQADV 1VJT HIS A 0 UNP Q9WZL1 EXPRESSION TAG SEQADV 1VJT MSE A 1 UNP Q9WZL1 MET 1 MODIFIED RESIDUE SEQADV 1VJT MSE A 36 UNP Q9WZL1 MET 36 MODIFIED RESIDUE SEQADV 1VJT MSE A 37 UNP Q9WZL1 MET 37 MODIFIED RESIDUE SEQADV 1VJT MSE A 122 UNP Q9WZL1 MET 122 MODIFIED RESIDUE SEQADV 1VJT MSE A 136 UNP Q9WZL1 MET 136 MODIFIED RESIDUE SEQADV 1VJT MSE A 146 UNP Q9WZL1 MET 146 MODIFIED RESIDUE SEQADV 1VJT MSE A 149 UNP Q9WZL1 MET 149 MODIFIED RESIDUE SEQADV 1VJT MSE A 156 UNP Q9WZL1 MET 156 MODIFIED RESIDUE SEQADV 1VJT MSE A 249 UNP Q9WZL1 MET 249 MODIFIED RESIDUE SEQADV 1VJT MSE A 254 UNP Q9WZL1 MET 254 MODIFIED RESIDUE SEQADV 1VJT MSE A 256 UNP Q9WZL1 MET 256 MODIFIED RESIDUE SEQADV 1VJT MSE A 262 UNP Q9WZL1 MET 262 MODIFIED RESIDUE SEQADV 1VJT MSE A 326 UNP Q9WZL1 MET 326 MODIFIED RESIDUE SEQADV 1VJT MSE A 380 UNP Q9WZL1 MET 380 MODIFIED RESIDUE SEQADV 1VJT MSE A 416 UNP Q9WZL1 MET 416 MODIFIED RESIDUE SEQRES 1 A 483 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 483 LYS ILE SER ILE ILE GLY ALA GLY SER VAL ARG PHE ALA SEQRES 3 A 483 LEU GLN LEU VAL GLY ASP ILE ALA GLN THR GLU GLU LEU SEQRES 4 A 483 SER ARG GLU ASP THR HIS ILE TYR MSE MSE ASP VAL HIS SEQRES 5 A 483 GLU ARG ARG LEU ASN ALA SER TYR ILE LEU ALA ARG LYS SEQRES 6 A 483 TYR VAL GLU GLU LEU ASN SER PRO VAL LYS ILE VAL LYS SEQRES 7 A 483 THR SER SER LEU ASP GLU ALA ILE ASP GLY ALA ASP PHE SEQRES 8 A 483 ILE ILE ASN THR ALA TYR PRO TYR ASP PRO ARG TYR HIS SEQRES 9 A 483 ASP SER GLY SER GLN ARG TRP ASP GLU VAL THR LYS VAL SEQRES 10 A 483 GLY GLU LYS HIS GLY TYR TYR ARG GLY ILE ASP SER GLN SEQRES 11 A 483 GLU LEU ASN MSE VAL SER THR TYR THR TYR VAL LEU SER SEQRES 12 A 483 SER TYR PRO ASP MSE LYS LEU ALA LEU GLU ILE ALA GLU SEQRES 13 A 483 LYS MSE LYS LYS MSE ALA PRO LYS ALA TYR LEU MSE GLN SEQRES 14 A 483 THR ALA ASN PRO VAL PHE GLU ILE THR GLN ALA VAL ARG SEQRES 15 A 483 ARG TRP THR GLY ALA ASN ILE VAL GLY PHE CYS HIS GLY SEQRES 16 A 483 VAL ALA GLY VAL TYR GLU VAL PHE GLU LYS LEU ASP LEU SEQRES 17 A 483 ASP PRO GLU GLU VAL ASP TRP GLN VAL ALA GLY VAL ASN SEQRES 18 A 483 HIS GLY ILE TRP LEU ASN ARG PHE ARG TYR ARG GLY GLU SEQRES 19 A 483 ASP ALA TYR PRO LEU LEU ASP GLU TRP ILE GLU LYS LYS SEQRES 20 A 483 LEU PRO GLU TRP GLU PRO LYS ASN PRO TRP ASP THR GLN SEQRES 21 A 483 MSE SER PRO ALA ALA MSE ASP MSE TYR LYS PHE TYR GLY SEQRES 22 A 483 MSE LEU PRO ILE GLY ASP THR VAL ARG ASN GLY SER TRP SEQRES 23 A 483 LYS TYR HIS TYR ASN LEU GLU THR LYS LYS LYS TRP PHE SEQRES 24 A 483 GLY LYS PHE GLY GLY ILE ASP ASN GLU VAL GLU ARG PRO SEQRES 25 A 483 LYS PHE HIS GLU GLN LEU ARG ARG ALA ARG GLU ARG LEU SEQRES 26 A 483 ILE LYS LEU ALA GLU GLU VAL GLN GLN ASN PRO GLY MSE SEQRES 27 A 483 LYS LEU THR GLU GLU HIS PRO GLU ILE PHE PRO LYS GLY SEQRES 28 A 483 LYS LEU SER GLY GLU GLN HIS ILE PRO PHE ILE ASN ALA SEQRES 29 A 483 ILE ALA ASN ASN LYS ARG VAL ARG LEU PHE LEU ASN VAL SEQRES 30 A 483 GLU ASN GLN GLY THR LEU LYS ASP PHE PRO ASP ASP VAL SEQRES 31 A 483 VAL MSE GLU LEU PRO VAL TRP VAL ASP CYS CYS GLY ILE SEQRES 32 A 483 HIS ARG GLU LYS VAL GLU PRO ASP LEU THR HIS ARG ILE SEQRES 33 A 483 LYS ILE PHE TYR LEU TRP PRO ARG ILE LEU ARG MSE GLU SEQRES 34 A 483 TRP ASN LEU GLU ALA TYR ILE SER ARG ASP ARG LYS VAL SEQRES 35 A 483 LEU GLU GLU ILE LEU ILE ARG ASP PRO ARG THR LYS SER SEQRES 36 A 483 TYR GLU GLN ILE VAL GLN VAL LEU ASP GLU ILE PHE ASN SEQRES 37 A 483 LEU PRO PHE ASN GLU GLU LEU ARG ARG TYR TYR LYS GLU SEQRES 38 A 483 LYS LEU MODRES 1VJT MSE A 1 MET SELENOMETHIONINE MODRES 1VJT MSE A 36 MET SELENOMETHIONINE MODRES 1VJT MSE A 37 MET SELENOMETHIONINE MODRES 1VJT MSE A 122 MET SELENOMETHIONINE MODRES 1VJT MSE A 136 MET SELENOMETHIONINE MODRES 1VJT MSE A 146 MET SELENOMETHIONINE MODRES 1VJT MSE A 149 MET SELENOMETHIONINE MODRES 1VJT MSE A 156 MET SELENOMETHIONINE MODRES 1VJT MSE A 249 MET SELENOMETHIONINE MODRES 1VJT MSE A 254 MET SELENOMETHIONINE MODRES 1VJT MSE A 256 MET SELENOMETHIONINE MODRES 1VJT MSE A 262 MET SELENOMETHIONINE MODRES 1VJT MSE A 326 MET SELENOMETHIONINE MODRES 1VJT MSE A 380 MET SELENOMETHIONINE MODRES 1VJT MSE A 416 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 36 8 HET MSE A 37 8 HET MSE A 122 8 HET MSE A 136 8 HET MSE A 146 8 HET MSE A 149 8 HET MSE A 156 8 HET MSE A 249 8 HET MSE A 254 8 HET MSE A 256 8 HET MSE A 262 8 HET MSE A 326 8 HET MSE A 380 8 HET MSE A 416 8 HET NAD A 500 36 HETNAM MSE SELENOMETHIONINE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 HOH *48(H2 O) HELIX 1 1 SER A 10 THR A 24 1 15 HELIX 2 2 HIS A 40 ASN A 59 1 20 HELIX 3 3 SER A 69 ASP A 75 1 7 HELIX 4 4 SER A 94 HIS A 109 1 16 HELIX 5 5 SER A 132 ALA A 150 1 19 HELIX 6 6 PRO A 161 THR A 173 1 13 HELIX 7 7 HIS A 182 ALA A 185 5 4 HELIX 8 8 GLY A 186 LEU A 194 1 9 HELIX 9 9 ASP A 197 GLU A 199 5 3 HELIX 10 10 ALA A 224 LYS A 235 1 12 HELIX 11 11 LEU A 236 TRP A 239 5 4 HELIX 12 12 SER A 250 GLY A 261 1 12 HELIX 13 13 GLY A 266 VAL A 269 5 4 HELIX 14 14 SER A 273 HIS A 277 5 5 HELIX 15 15 ASN A 279 GLY A 288 1 10 HELIX 16 16 VAL A 297 ASN A 323 1 27 HELIX 17 17 LYS A 327 HIS A 332 1 6 HELIX 18 18 GLN A 345 ASN A 356 1 12 HELIX 19 19 THR A 401 TYR A 408 1 8 HELIX 20 20 TYR A 408 ARG A 426 1 19 HELIX 21 21 ASP A 427 ARG A 437 1 11 HELIX 22 22 SER A 443 ASN A 456 1 14 HELIX 23 23 LEU A 457 PHE A 459 5 3 HELIX 24 24 ASN A 460 TYR A 467 1 8 SHEET 1 A 6 LYS A 63 THR A 67 0 SHEET 2 A 6 THR A 32 MSE A 37 1 N ILE A 34 O VAL A 65 SHEET 3 A 6 MSE A 1 ILE A 6 1 N MSE A 1 O HIS A 33 SHEET 4 A 6 PHE A 79 ASN A 82 1 O ILE A 81 N ILE A 6 SHEET 5 A 6 TYR A 154 GLN A 157 1 O MSE A 156 N ILE A 80 SHEET 6 A 6 ILE A 177 GLY A 179 1 O VAL A 178 N LEU A 155 SHEET 1 B 3 VAL A 201 VAL A 208 0 SHEET 2 B 3 GLY A 211 TYR A 219 -1 O ARG A 218 N ASP A 202 SHEET 3 B 3 GLU A 222 ASP A 223 -1 O GLU A 222 N TYR A 219 SHEET 1 C 3 VAL A 201 VAL A 208 0 SHEET 2 C 3 GLY A 211 TYR A 219 -1 O ARG A 218 N ASP A 202 SHEET 3 C 3 PRO A 264 ILE A 265 -1 O ILE A 265 N ILE A 212 SHEET 1 D 3 VAL A 359 GLU A 366 0 SHEET 2 D 3 VAL A 379 ASP A 387 -1 O VAL A 384 N LEU A 361 SHEET 3 D 3 GLY A 390 ARG A 393 -1 O HIS A 392 N TRP A 385 LINK C HIS A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C TYR A 35 N MSE A 36 1555 1555 1.32 LINK C MSE A 36 N MSE A 37 1555 1555 1.33 LINK C MSE A 37 N ASP A 38 1555 1555 1.33 LINK C ASN A 121 N MSE A 122 1555 1555 1.33 LINK C MSE A 122 N VAL A 123 1555 1555 1.33 LINK C ASP A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N LYS A 137 1555 1555 1.33 LINK C LYS A 145 N MSE A 146 1555 1555 1.33 LINK C MSE A 146 N LYS A 147 1555 1555 1.33 LINK C LYS A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N ALA A 150 1555 1555 1.33 LINK C LEU A 155 N MSE A 156 1555 1555 1.33 LINK C MSE A 156 N GLN A 157 1555 1555 1.34 LINK C GLN A 248 N MSE A 249 1555 1555 1.33 LINK C MSE A 249 N SER A 250 1555 1555 1.33 LINK C ALA A 253 N MSE A 254 1555 1555 1.33 LINK C MSE A 254 N ASP A 255 1555 1555 1.33 LINK C ASP A 255 N MSE A 256 1555 1555 1.33 LINK C MSE A 256 N TYR A 257 1555 1555 1.34 LINK C GLY A 261 N MSE A 262 1555 1555 1.33 LINK C MSE A 262 N LEU A 263 1555 1555 1.33 LINK C GLY A 325 N MSE A 326 1555 1555 1.33 LINK C MSE A 326 N LYS A 327 1555 1555 1.33 LINK C VAL A 379 N MSE A 380 1555 1555 1.33 LINK C MSE A 380 N GLU A 381 1555 1555 1.33 LINK C ARG A 415 N MSE A 416 1555 1555 1.33 LINK C MSE A 416 N GLU A 417 1555 1555 1.33 CISPEP 1 ASN A 160 PRO A 161 0 -5.63 CISPEP 2 GLU A 397 PRO A 398 0 -1.73 SITE 1 AC1 15 GLY A 7 GLY A 9 SER A 10 MSE A 37 SITE 2 AC1 15 ASP A 38 HIS A 40 ARG A 43 THR A 83 SITE 3 AC1 15 ALA A 84 TYR A 85 PRO A 86 THR A 158 SITE 4 AC1 15 ALA A 159 ASN A 160 ARG A 310 CRYST1 75.722 79.815 89.222 90.00 101.99 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013206 0.000000 0.002805 0.00000 SCALE2 0.000000 0.012529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011458 0.00000