HEADER    HYDROLASE                               22-MAR-04   1VJT              
TITLE     CRYSTAL STRUCTURE OF ALPHA-GLUCOSIDASE (TM0752) FROM THERMOTOGA       
TITLE    2 MARITIMA AT 2.50 A RESOLUTION                                        
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: ALPHA-GLUCOSIDASE;                                         
COMPND   3 CHAIN: A;                                                            
COMPND   4 EC: 3.2.1.139;                                                       
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA;                            
SOURCE   3 ORGANISM_TAXID: 2336;                                                
SOURCE   4 GENE: TM0752;                                                        
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID                               
KEYWDS    TM0752, ALPHA-GLUCOSIDASE, STRUCTURAL GENOMICS, JCSG, PSI, PROTEIN    
KEYWDS   2 STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL GENOMICS,          
KEYWDS   3 HYDROLASE                                                            
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG)                           
REVDAT   8   06-NOV-24 1VJT    1       REMARK                                   
REVDAT   7   25-JAN-23 1VJT    1       REMARK SEQADV LINK                       
REVDAT   6   13-JUL-11 1VJT    1       VERSN                                    
REVDAT   5   24-FEB-09 1VJT    1       VERSN                                    
REVDAT   4   28-MAR-06 1VJT    1       JRNL                                     
REVDAT   3   18-JAN-05 1VJT    1       AUTHOR KEYWDS REMARK                     
REVDAT   2   10-AUG-04 1VJT    1       HEADER TITLE  COMPND KEYWDS              
REVDAT   2 2                   1       JRNL                                     
REVDAT   1   30-MAR-04 1VJT    0                                                
JRNL        AUTH   JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG)                  
JRNL        TITL   CRYSTAL STRUCTURE OF ALPHA-GLUCOSIDASE (TM0752) FROM         
JRNL        TITL 2 THERMOTOGA MARITIMA AT 2.50 A RESOLUTION                     
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.50 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.2.0001                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : NULL                                          
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 43.64                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 83.3                           
REMARK   3   NUMBER OF REFLECTIONS             : 14406                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.198                           
REMARK   3   R VALUE            (WORKING SET) : 0.194                           
REMARK   3   FREE R VALUE                     : 0.256                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 754                             
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.50                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.56                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 512                          
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : NULL                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2730                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 19                           
REMARK   3   BIN FREE R VALUE                    : 0.3570                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 3872                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 36                                      
REMARK   3   SOLVENT ATOMS            : 48                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   B VALUE TYPE : LIKELY RESIDUAL                                     
REMARK   3   FROM WILSON PLOT           (A**2) : 44.23                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 26.23                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 1.18000                                              
REMARK   3    B22 (A**2) : -0.33000                                             
REMARK   3    B33 (A**2) : -0.70000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.36000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): NULL          
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.362         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.237         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.539        
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.932                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.878                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  4018 ; 0.010 ; 0.022       
REMARK   3   BOND LENGTHS OTHERS               (A):  3595 ; 0.001 ; 0.020       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  5451 ; 1.171 ; 1.947       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  8355 ; 0.804 ; 3.000       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   470 ; 5.525 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   201 ;39.312 ;23.582       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   698 ;17.788 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    31 ;20.348 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   574 ; 0.069 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  4410 ; 0.003 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):   839 ; 0.001 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):   874 ; 0.197 ; 0.200       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  3685 ; 0.172 ; 0.200       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  2338 ; 0.084 ; 0.200       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   107 ; 0.145 ; 0.200       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    11 ; 0.228 ; 0.200       
REMARK   3   SYMMETRY VDW OTHERS               (A):    42 ; 0.269 ; 0.200       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):     8 ; 0.283 ; 0.200       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  2546 ; 0.570 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):   946 ; 0.082 ; 1.500       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  3812 ; 0.816 ; 2.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  1881 ; 1.104 ; 3.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  1639 ; 1.702 ; 4.500       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 1                                          
REMARK   3                                                                      
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A     1        A   469                          
REMARK   3    ORIGIN FOR THE GROUP (A):  59.5753   9.3396  21.7988              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:  -0.0468 T22:  -0.0221                                     
REMARK   3      T33:  -0.0112 T12:  -0.0034                                     
REMARK   3      T13:  -0.0251 T23:  -0.0208                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.2988 L22:   0.9307                                     
REMARK   3      L33:   1.2814 L12:  -0.1978                                     
REMARK   3      L13:  -0.0578 L23:  -0.2684                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.0067 S12:   0.1826 S13:  -0.0399                       
REMARK   3      S21:  -0.1821 S22:   0.0214 S23:   0.0420                       
REMARK   3      S31:   0.0202 S32:  -0.0437 S33:  -0.0281                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : BABINET MODEL WITH MASK                              
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE       
REMARK   3  RIDING POSITIONS 2. THE NICOTINAMIDE MOIETY OF NAD WAS NOT          
REMARK   3  VISIBLE IN THE DENSITY. 3. RESIDUAL POSITIVE DIFFERENCE DENSITY     
REMARK   3  LIES CLOSE TO THE SIDECHAINS OF THE ACTIVE SITE RESIDUES SER10      
REMARK   3  AND PHE13.                                                          
REMARK   4                                                                      
REMARK   4 1VJT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-04.                  
REMARK 100 THE DEPOSITION ID IS D_1000001929.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 08-AUG-03                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 8.1                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 19-ID                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.00000, 0.979340, 0.979206        
REMARK 200  MONOCHROMATOR                  : ROSENBAUM-ROCK MONOCHROMATOR       
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : APS                                
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 15162                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.500                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 83.3                               
REMARK 200  DATA REDUNDANCY                : 3.120                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : 0.05700                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 19.0800                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.59                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 42.1                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 2.03                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : 0.26400                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 3.110                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: MAD                                            
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD                          
REMARK 200 SOFTWARE USED: AUTOSHARP, RESOLVE                                    
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 47.87                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M TRI-LITHIUM CITRATE TETRAHYDRATE,   
REMARK 280  20% PEG-3350, PH 8.1, VAPOR DIFFUSION,SITTING DROP,NANODROP,        
REMARK 280  TEMPERATURE 277K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1                          
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y,-Z                                                 
REMARK 290       3555   X+1/2,Y+1/2,Z                                           
REMARK 290       4555   -X+1/2,Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   3  1.000000  0.000000  0.000000       37.86100            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       39.90750            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000       37.86100            
REMARK 290   SMTRY2   4  0.000000  1.000000  0.000000       39.90750            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   2 -1.000000  0.000000  0.000000      132.90894            
REMARK 350   BIOMT2   2  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   2  0.000000  0.000000 -1.000000       87.27552            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A   -11                                                      
REMARK 465     GLY A   -10                                                      
REMARK 465     SER A    -9                                                      
REMARK 465     ASP A    -8                                                      
REMARK 465     LYS A    -7                                                      
REMARK 465     ILE A    -6                                                      
REMARK 465     HIS A    -5                                                      
REMARK 465     HIS A    -4                                                      
REMARK 465     HIS A    -3                                                      
REMARK 465     HIS A    -2                                                      
REMARK 465     LYS A   470                                                      
REMARK 465     LEU A   471                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     GLU A 144    CG   CD   OE1  OE2                                  
REMARK 470     GLU A 222    CD   OE1  OE2                                       
REMARK 470     GLU A 281    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 289    CE   NZ                                             
REMARK 470     GLU A 311    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 327    CG   CD   CE   NZ                                   
REMARK 470     GLU A 334    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 372    CG   CD   CE   NZ                                   
REMARK 470     ASP A 399    CG   OD1  OD2                                       
REMARK 470     GLU A 461    CG   CD   OE1  OE2                                  
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ASP A 116   CB  -  CG  -  OD2 ANGL. DEV. =   5.7 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    SER A  10       73.89    -68.77                                   
REMARK 500    SER A  94      140.91   -173.58                                   
REMARK 500    ASN A 121       88.38   -160.13                                   
REMARK 500    LEU A 130      -57.42     66.22                                   
REMARK 500    ALA A 150       63.59   -151.18                                   
REMARK 500    ASN A 271       55.90    -98.63                                   
REMARK 500    ASN A 323       79.99   -117.05                                   
REMARK 500    TYR A 408      -65.20   -107.65                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 600                                                                      
REMARK 600 HETEROGEN                                                            
REMARK 600 THE NICOTINAMIDE MOIETY OF NAD WAS NOT                               
REMARK 600 VISIBLE IN THE DENSITY.                                              
REMARK 610                                                                      
REMARK 610 MISSING HETEROATOM                                                   
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 610 I=INSERTION CODE):                                                   
REMARK 610   M RES C SSEQI                                                      
REMARK 610     NAD A  500                                                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 500                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 282622   RELATED DB: TARGETDB                            
DBREF  1VJT A    1   471  UNP    Q9WZL1   Q9WZL1_THEMA     1    471             
SEQADV 1VJT MET A  -11  UNP  Q9WZL1              EXPRESSION TAG                 
SEQADV 1VJT GLY A  -10  UNP  Q9WZL1              EXPRESSION TAG                 
SEQADV 1VJT SER A   -9  UNP  Q9WZL1              EXPRESSION TAG                 
SEQADV 1VJT ASP A   -8  UNP  Q9WZL1              EXPRESSION TAG                 
SEQADV 1VJT LYS A   -7  UNP  Q9WZL1              EXPRESSION TAG                 
SEQADV 1VJT ILE A   -6  UNP  Q9WZL1              EXPRESSION TAG                 
SEQADV 1VJT HIS A   -5  UNP  Q9WZL1              EXPRESSION TAG                 
SEQADV 1VJT HIS A   -4  UNP  Q9WZL1              EXPRESSION TAG                 
SEQADV 1VJT HIS A   -3  UNP  Q9WZL1              EXPRESSION TAG                 
SEQADV 1VJT HIS A   -2  UNP  Q9WZL1              EXPRESSION TAG                 
SEQADV 1VJT HIS A   -1  UNP  Q9WZL1              EXPRESSION TAG                 
SEQADV 1VJT HIS A    0  UNP  Q9WZL1              EXPRESSION TAG                 
SEQADV 1VJT MSE A    1  UNP  Q9WZL1    MET     1 MODIFIED RESIDUE               
SEQADV 1VJT MSE A   36  UNP  Q9WZL1    MET    36 MODIFIED RESIDUE               
SEQADV 1VJT MSE A   37  UNP  Q9WZL1    MET    37 MODIFIED RESIDUE               
SEQADV 1VJT MSE A  122  UNP  Q9WZL1    MET   122 MODIFIED RESIDUE               
SEQADV 1VJT MSE A  136  UNP  Q9WZL1    MET   136 MODIFIED RESIDUE               
SEQADV 1VJT MSE A  146  UNP  Q9WZL1    MET   146 MODIFIED RESIDUE               
SEQADV 1VJT MSE A  149  UNP  Q9WZL1    MET   149 MODIFIED RESIDUE               
SEQADV 1VJT MSE A  156  UNP  Q9WZL1    MET   156 MODIFIED RESIDUE               
SEQADV 1VJT MSE A  249  UNP  Q9WZL1    MET   249 MODIFIED RESIDUE               
SEQADV 1VJT MSE A  254  UNP  Q9WZL1    MET   254 MODIFIED RESIDUE               
SEQADV 1VJT MSE A  256  UNP  Q9WZL1    MET   256 MODIFIED RESIDUE               
SEQADV 1VJT MSE A  262  UNP  Q9WZL1    MET   262 MODIFIED RESIDUE               
SEQADV 1VJT MSE A  326  UNP  Q9WZL1    MET   326 MODIFIED RESIDUE               
SEQADV 1VJT MSE A  380  UNP  Q9WZL1    MET   380 MODIFIED RESIDUE               
SEQADV 1VJT MSE A  416  UNP  Q9WZL1    MET   416 MODIFIED RESIDUE               
SEQRES   1 A  483  MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE          
SEQRES   2 A  483  LYS ILE SER ILE ILE GLY ALA GLY SER VAL ARG PHE ALA          
SEQRES   3 A  483  LEU GLN LEU VAL GLY ASP ILE ALA GLN THR GLU GLU LEU          
SEQRES   4 A  483  SER ARG GLU ASP THR HIS ILE TYR MSE MSE ASP VAL HIS          
SEQRES   5 A  483  GLU ARG ARG LEU ASN ALA SER TYR ILE LEU ALA ARG LYS          
SEQRES   6 A  483  TYR VAL GLU GLU LEU ASN SER PRO VAL LYS ILE VAL LYS          
SEQRES   7 A  483  THR SER SER LEU ASP GLU ALA ILE ASP GLY ALA ASP PHE          
SEQRES   8 A  483  ILE ILE ASN THR ALA TYR PRO TYR ASP PRO ARG TYR HIS          
SEQRES   9 A  483  ASP SER GLY SER GLN ARG TRP ASP GLU VAL THR LYS VAL          
SEQRES  10 A  483  GLY GLU LYS HIS GLY TYR TYR ARG GLY ILE ASP SER GLN          
SEQRES  11 A  483  GLU LEU ASN MSE VAL SER THR TYR THR TYR VAL LEU SER          
SEQRES  12 A  483  SER TYR PRO ASP MSE LYS LEU ALA LEU GLU ILE ALA GLU          
SEQRES  13 A  483  LYS MSE LYS LYS MSE ALA PRO LYS ALA TYR LEU MSE GLN          
SEQRES  14 A  483  THR ALA ASN PRO VAL PHE GLU ILE THR GLN ALA VAL ARG          
SEQRES  15 A  483  ARG TRP THR GLY ALA ASN ILE VAL GLY PHE CYS HIS GLY          
SEQRES  16 A  483  VAL ALA GLY VAL TYR GLU VAL PHE GLU LYS LEU ASP LEU          
SEQRES  17 A  483  ASP PRO GLU GLU VAL ASP TRP GLN VAL ALA GLY VAL ASN          
SEQRES  18 A  483  HIS GLY ILE TRP LEU ASN ARG PHE ARG TYR ARG GLY GLU          
SEQRES  19 A  483  ASP ALA TYR PRO LEU LEU ASP GLU TRP ILE GLU LYS LYS          
SEQRES  20 A  483  LEU PRO GLU TRP GLU PRO LYS ASN PRO TRP ASP THR GLN          
SEQRES  21 A  483  MSE SER PRO ALA ALA MSE ASP MSE TYR LYS PHE TYR GLY          
SEQRES  22 A  483  MSE LEU PRO ILE GLY ASP THR VAL ARG ASN GLY SER TRP          
SEQRES  23 A  483  LYS TYR HIS TYR ASN LEU GLU THR LYS LYS LYS TRP PHE          
SEQRES  24 A  483  GLY LYS PHE GLY GLY ILE ASP ASN GLU VAL GLU ARG PRO          
SEQRES  25 A  483  LYS PHE HIS GLU GLN LEU ARG ARG ALA ARG GLU ARG LEU          
SEQRES  26 A  483  ILE LYS LEU ALA GLU GLU VAL GLN GLN ASN PRO GLY MSE          
SEQRES  27 A  483  LYS LEU THR GLU GLU HIS PRO GLU ILE PHE PRO LYS GLY          
SEQRES  28 A  483  LYS LEU SER GLY GLU GLN HIS ILE PRO PHE ILE ASN ALA          
SEQRES  29 A  483  ILE ALA ASN ASN LYS ARG VAL ARG LEU PHE LEU ASN VAL          
SEQRES  30 A  483  GLU ASN GLN GLY THR LEU LYS ASP PHE PRO ASP ASP VAL          
SEQRES  31 A  483  VAL MSE GLU LEU PRO VAL TRP VAL ASP CYS CYS GLY ILE          
SEQRES  32 A  483  HIS ARG GLU LYS VAL GLU PRO ASP LEU THR HIS ARG ILE          
SEQRES  33 A  483  LYS ILE PHE TYR LEU TRP PRO ARG ILE LEU ARG MSE GLU          
SEQRES  34 A  483  TRP ASN LEU GLU ALA TYR ILE SER ARG ASP ARG LYS VAL          
SEQRES  35 A  483  LEU GLU GLU ILE LEU ILE ARG ASP PRO ARG THR LYS SER          
SEQRES  36 A  483  TYR GLU GLN ILE VAL GLN VAL LEU ASP GLU ILE PHE ASN          
SEQRES  37 A  483  LEU PRO PHE ASN GLU GLU LEU ARG ARG TYR TYR LYS GLU          
SEQRES  38 A  483  LYS LEU                                                      
MODRES 1VJT MSE A    1  MET  SELENOMETHIONINE                                   
MODRES 1VJT MSE A   36  MET  SELENOMETHIONINE                                   
MODRES 1VJT MSE A   37  MET  SELENOMETHIONINE                                   
MODRES 1VJT MSE A  122  MET  SELENOMETHIONINE                                   
MODRES 1VJT MSE A  136  MET  SELENOMETHIONINE                                   
MODRES 1VJT MSE A  146  MET  SELENOMETHIONINE                                   
MODRES 1VJT MSE A  149  MET  SELENOMETHIONINE                                   
MODRES 1VJT MSE A  156  MET  SELENOMETHIONINE                                   
MODRES 1VJT MSE A  249  MET  SELENOMETHIONINE                                   
MODRES 1VJT MSE A  254  MET  SELENOMETHIONINE                                   
MODRES 1VJT MSE A  256  MET  SELENOMETHIONINE                                   
MODRES 1VJT MSE A  262  MET  SELENOMETHIONINE                                   
MODRES 1VJT MSE A  326  MET  SELENOMETHIONINE                                   
MODRES 1VJT MSE A  380  MET  SELENOMETHIONINE                                   
MODRES 1VJT MSE A  416  MET  SELENOMETHIONINE                                   
HET    MSE  A   1       8                                                       
HET    MSE  A  36       8                                                       
HET    MSE  A  37       8                                                       
HET    MSE  A 122       8                                                       
HET    MSE  A 136       8                                                       
HET    MSE  A 146       8                                                       
HET    MSE  A 149       8                                                       
HET    MSE  A 156       8                                                       
HET    MSE  A 249       8                                                       
HET    MSE  A 254       8                                                       
HET    MSE  A 256       8                                                       
HET    MSE  A 262       8                                                       
HET    MSE  A 326       8                                                       
HET    MSE  A 380       8                                                       
HET    MSE  A 416       8                                                       
HET    NAD  A 500      36                                                       
HETNAM     MSE SELENOMETHIONINE                                                 
HETNAM     NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE                                
FORMUL   1  MSE    15(C5 H11 N O2 SE)                                           
FORMUL   2  NAD    C21 H27 N7 O14 P2                                            
FORMUL   3  HOH   *48(H2 O)                                                     
HELIX    1   1 SER A   10  THR A   24  1                                  15    
HELIX    2   2 HIS A   40  ASN A   59  1                                  20    
HELIX    3   3 SER A   69  ASP A   75  1                                   7    
HELIX    4   4 SER A   94  HIS A  109  1                                  16    
HELIX    5   5 SER A  132  ALA A  150  1                                  19    
HELIX    6   6 PRO A  161  THR A  173  1                                  13    
HELIX    7   7 HIS A  182  ALA A  185  5                                   4    
HELIX    8   8 GLY A  186  LEU A  194  1                                   9    
HELIX    9   9 ASP A  197  GLU A  199  5                                   3    
HELIX   10  10 ALA A  224  LYS A  235  1                                  12    
HELIX   11  11 LEU A  236  TRP A  239  5                                   4    
HELIX   12  12 SER A  250  GLY A  261  1                                  12    
HELIX   13  13 GLY A  266  VAL A  269  5                                   4    
HELIX   14  14 SER A  273  HIS A  277  5                                   5    
HELIX   15  15 ASN A  279  GLY A  288  1                                  10    
HELIX   16  16 VAL A  297  ASN A  323  1                                  27    
HELIX   17  17 LYS A  327  HIS A  332  1                                   6    
HELIX   18  18 GLN A  345  ASN A  356  1                                  12    
HELIX   19  19 THR A  401  TYR A  408  1                                   8    
HELIX   20  20 TYR A  408  ARG A  426  1                                  19    
HELIX   21  21 ASP A  427  ARG A  437  1                                  11    
HELIX   22  22 SER A  443  ASN A  456  1                                  14    
HELIX   23  23 LEU A  457  PHE A  459  5                                   3    
HELIX   24  24 ASN A  460  TYR A  467  1                                   8    
SHEET    1   A 6 LYS A  63  THR A  67  0                                        
SHEET    2   A 6 THR A  32  MSE A  37  1  N  ILE A  34   O  VAL A  65           
SHEET    3   A 6 MSE A   1  ILE A   6  1  N  MSE A   1   O  HIS A  33           
SHEET    4   A 6 PHE A  79  ASN A  82  1  O  ILE A  81   N  ILE A   6           
SHEET    5   A 6 TYR A 154  GLN A 157  1  O  MSE A 156   N  ILE A  80           
SHEET    6   A 6 ILE A 177  GLY A 179  1  O  VAL A 178   N  LEU A 155           
SHEET    1   B 3 VAL A 201  VAL A 208  0                                        
SHEET    2   B 3 GLY A 211  TYR A 219 -1  O  ARG A 218   N  ASP A 202           
SHEET    3   B 3 GLU A 222  ASP A 223 -1  O  GLU A 222   N  TYR A 219           
SHEET    1   C 3 VAL A 201  VAL A 208  0                                        
SHEET    2   C 3 GLY A 211  TYR A 219 -1  O  ARG A 218   N  ASP A 202           
SHEET    3   C 3 PRO A 264  ILE A 265 -1  O  ILE A 265   N  ILE A 212           
SHEET    1   D 3 VAL A 359  GLU A 366  0                                        
SHEET    2   D 3 VAL A 379  ASP A 387 -1  O  VAL A 384   N  LEU A 361           
SHEET    3   D 3 GLY A 390  ARG A 393 -1  O  HIS A 392   N  TRP A 385           
LINK         C   HIS A   0                 N   MSE A   1     1555   1555  1.33  
LINK         C   MSE A   1                 N   LYS A   2     1555   1555  1.33  
LINK         C   TYR A  35                 N   MSE A  36     1555   1555  1.32  
LINK         C   MSE A  36                 N   MSE A  37     1555   1555  1.33  
LINK         C   MSE A  37                 N   ASP A  38     1555   1555  1.33  
LINK         C   ASN A 121                 N   MSE A 122     1555   1555  1.33  
LINK         C   MSE A 122                 N   VAL A 123     1555   1555  1.33  
LINK         C   ASP A 135                 N   MSE A 136     1555   1555  1.33  
LINK         C   MSE A 136                 N   LYS A 137     1555   1555  1.33  
LINK         C   LYS A 145                 N   MSE A 146     1555   1555  1.33  
LINK         C   MSE A 146                 N   LYS A 147     1555   1555  1.33  
LINK         C   LYS A 148                 N   MSE A 149     1555   1555  1.33  
LINK         C   MSE A 149                 N   ALA A 150     1555   1555  1.33  
LINK         C   LEU A 155                 N   MSE A 156     1555   1555  1.33  
LINK         C   MSE A 156                 N   GLN A 157     1555   1555  1.34  
LINK         C   GLN A 248                 N   MSE A 249     1555   1555  1.33  
LINK         C   MSE A 249                 N   SER A 250     1555   1555  1.33  
LINK         C   ALA A 253                 N   MSE A 254     1555   1555  1.33  
LINK         C   MSE A 254                 N   ASP A 255     1555   1555  1.33  
LINK         C   ASP A 255                 N   MSE A 256     1555   1555  1.33  
LINK         C   MSE A 256                 N   TYR A 257     1555   1555  1.34  
LINK         C   GLY A 261                 N   MSE A 262     1555   1555  1.33  
LINK         C   MSE A 262                 N   LEU A 263     1555   1555  1.33  
LINK         C   GLY A 325                 N   MSE A 326     1555   1555  1.33  
LINK         C   MSE A 326                 N   LYS A 327     1555   1555  1.33  
LINK         C   VAL A 379                 N   MSE A 380     1555   1555  1.33  
LINK         C   MSE A 380                 N   GLU A 381     1555   1555  1.33  
LINK         C   ARG A 415                 N   MSE A 416     1555   1555  1.33  
LINK         C   MSE A 416                 N   GLU A 417     1555   1555  1.33  
CISPEP   1 ASN A  160    PRO A  161          0        -5.63                     
CISPEP   2 GLU A  397    PRO A  398          0        -1.73                     
SITE     1 AC1 15 GLY A   7  GLY A   9  SER A  10  MSE A  37                    
SITE     2 AC1 15 ASP A  38  HIS A  40  ARG A  43  THR A  83                    
SITE     3 AC1 15 ALA A  84  TYR A  85  PRO A  86  THR A 158                    
SITE     4 AC1 15 ALA A 159  ASN A 160  ARG A 310                               
CRYST1   75.722   79.815   89.222  90.00 101.99  90.00 C 1 2 1       4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.013206  0.000000  0.002805        0.00000                         
SCALE2      0.000000  0.012529  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.011458        0.00000