HEADER OXIDOREDUCTASE 29-MAR-04 1VJU TITLE COPROPORPHYRINOGEN III OXIDASE FROM LEISHMANIA MAJOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPROPORPHYRINOGEN III OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.3.3.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, STRUCTURAL KEYWDS 2 GENOMICS OF PATHOGENIC PROTOZOA CONSORTIUM, SGPP, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA CONSORTIUM (SGPP) REVDAT 7 27-DEC-23 1VJU 1 LINK REVDAT 6 31-JAN-18 1VJU 1 JRNL REVDAT 5 04-OCT-17 1VJU 1 REMARK REVDAT 4 24-FEB-09 1VJU 1 VERSN REVDAT 3 28-AUG-07 1VJU 1 HEADER JRNL TITLE REMARK REVDAT 2 01-FEB-05 1VJU 1 AUTHOR KEYWDS REMARK REVDAT 1 13-APR-04 1VJU 0 JRNL AUTH STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA CONSORTIUM JRNL TITL COPROPORPHYRINOGEN III OXIDASE FROM LEISHMANIA MAJOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0000 24/04/2001 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 116622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.023 REMARK 3 FREE R VALUE TEST SET COUNT : 5858 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7739 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 432 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4685 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 644 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00700 REMARK 3 B22 (A**2) : 0.31400 REMARK 3 B33 (A**2) : -0.16500 REMARK 3 B12 (A**2) : -0.28700 REMARK 3 B13 (A**2) : 0.28100 REMARK 3 B23 (A**2) : -0.06000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.057 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.806 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4829 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4217 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6541 ; 2.522 ; 1.918 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9756 ; 1.077 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 582 ; 5.979 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 255 ;34.124 ;23.216 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 746 ;13.563 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;15.844 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 652 ; 0.149 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5512 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1120 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1000 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4186 ; 0.213 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2388 ; 0.208 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2734 ; 0.100 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 411 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.031 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.435 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 124 ; 0.281 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 43 ; 0.141 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3053 ; 2.836 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1208 ; 0.670 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4630 ; 3.491 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3991 ; 2.072 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2183 ; 3.747 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4079 ; 1.288 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1911 ; 5.333 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5765 ; 2.689 ; 3.000 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000001930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116623 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.401 REMARK 200 RESOLUTION RANGE LOW (A) : 64.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 3.850 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SOLVE 2.06, SHELX, RESOLVE 2.06, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 UL PROTEIN 19 MG/ML, 0.4 UL REMARK 280 CRYSTALLIZATION BUFFER: 29% PEG 5000MME, 200 MM AMMONIUM SULFATE, REMARK 280 100 MM MES, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 LEU A 79 REMARK 465 PRO A 80 REMARK 465 MSE A 81 REMARK 465 SER A 82 REMARK 465 SER A 83 REMARK 465 THR A 84 REMARK 465 GLU A 85 REMARK 465 ARG A 86 REMARK 465 HIS A 87 REMARK 465 PRO A 88 REMARK 465 ASP A 89 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 PRO B 80 REMARK 465 MSE B 81 REMARK 465 SER B 82 REMARK 465 SER B 83 REMARK 465 THR B 84 REMARK 465 GLU B 85 REMARK 465 ARG B 86 REMARK 465 HIS B 87 REMARK 465 PRO B 88 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 8 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 LYS A 107 CE NZ REMARK 470 PHE A 262 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 265 CG CD OE1 NE2 REMARK 470 HIS B 6 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 8 ND1 CD2 CE1 NE2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 LYS B 128 CD CE NZ REMARK 470 GLU B 129 CG CD OE1 OE2 REMARK 470 GLU B 205 CG CD OE1 OE2 REMARK 470 PHE B 262 CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 265 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 387 O HOH B 598 2.07 REMARK 500 O HOH B 568 O HOH B 582 2.13 REMARK 500 O HOH A 521 O HOH A 600 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE ARG A 280 NE ARG B 280 1655 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 98 SE MSE A 98 CE -0.713 REMARK 500 MSE B 58 SE MSE B 58 CE -0.497 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 43 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 54 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 54 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 GLU A 65 CG - CD - OE1 ANGL. DEV. = 18.0 DEGREES REMARK 500 GLU A 65 CG - CD - OE2 ANGL. DEV. = -16.4 DEGREES REMARK 500 MSE A 98 CG - SE - CE ANGL. DEV. = -24.0 DEGREES REMARK 500 GLU A 187 CA - CB - CG ANGL. DEV. = 19.2 DEGREES REMARK 500 GLU A 209 CG - CD - OE1 ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG A 228 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 228 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 PHE A 241 CB - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 245 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 246 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 248 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 TYR A 249 CB - CG - CD2 ANGL. DEV. = 3.7 DEGREES REMARK 500 LEU B 11 CB - CG - CD2 ANGL. DEV. = -11.2 DEGREES REMARK 500 GLU B 14 OE1 - CD - OE2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP B 25 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 119 CD - NE - CZ ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG B 119 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 PHE B 121 CB - CG - CD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 125 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG B 125 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG B 151 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 189 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 228 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 229 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 245 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 246 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 248 NE - CZ - NH2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 200 18.52 -154.78 REMARK 500 TYR A 301 -54.84 -123.42 REMARK 500 ASN B 200 21.71 -152.27 REMARK 500 TYR B 301 -61.24 -121.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: LMAJ006828AAA RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE WAS NO SUITABLE SEQUENCE DATABASE REMARK 999 REFERENCE FOR THIS PROTEIN AT THE TIME OF REMARK 999 PROCESSING. THIS TARGET ORF DOES NOT YET REMARK 999 HAVE A SEQUENCE ID IN GENEDB; ITS PROVISIONAL REMARK 999 LISTING CODE IS CHR6_TMP.82 DBREF 1VJU A 9 309 UNP P84155 HEM6_LEIMA 1 301 DBREF 1VJU B 9 309 UNP P84155 HEM6_LEIMA 1 301 SEQRES 1 A 309 MSE ALA HIS HIS HIS HIS HIS HIS MSE SER LEU ALA VAL SEQRES 2 A 309 GLU ALA VAL LYS ASP PHE LEU LEU LYS LEU GLN ASP ASP SEQRES 3 A 309 ILE CYS GLU ALA LEU GLU ALA GLU ASP GLY GLN ALA THR SEQRES 4 A 309 PHE VAL GLU ASP LYS TRP THR ARG GLU GLY GLY GLY GLY SEQRES 5 A 309 GLY ARG THR ARG VAL MSE VAL ASP GLY ALA VAL ILE GLU SEQRES 6 A 309 LYS GLY GLY VAL ASN PHE SER HIS VAL TYR GLY LYS GLY SEQRES 7 A 309 LEU PRO MSE SER SER THR GLU ARG HIS PRO ASP ILE ALA SEQRES 8 A 309 GLY CYS ASN PHE GLU ALA MSE GLY VAL SER LEU VAL ILE SEQRES 9 A 309 HIS PRO LYS ASN PRO HIS VAL PRO THR SER HIS ALA ASN SEQRES 10 A 309 VAL ARG LEU PHE VAL ALA GLU ARG GLU GLY LYS GLU PRO SEQRES 11 A 309 VAL TRP TRP PHE GLY GLY GLY PHE ASP LEU THR PRO TYR SEQRES 12 A 309 TYR ALA VAL GLU GLU ASP CYS ARG ASP PHE HIS GLN VAL SEQRES 13 A 309 ALA GLN ASP LEU CYS LYS PRO PHE GLY ALA ASP VAL TYR SEQRES 14 A 309 ALA ARG PHE LYS GLY TRP CYS ASP GLU TYR PHE PHE ILE SEQRES 15 A 309 PRO TYR ARG ASN GLU ALA ARG GLY ILE GLY GLY LEU PHE SEQRES 16 A 309 PHE ASP ASP LEU ASN GLU TRP PRO PHE GLU LYS CYS PHE SEQRES 17 A 309 GLU PHE VAL GLN ALA VAL GLY LYS GLY TYR MSE ASP ALA SEQRES 18 A 309 TYR ILE PRO ILE VAL ASN ARG ARG LYS ASN THR PRO TYR SEQRES 19 A 309 THR GLU GLN GLN VAL GLU PHE GLN GLU PHE ARG ARG GLY SEQRES 20 A 309 ARG TYR ALA GLU PHE ASN LEU VAL ILE ASP ARG GLY THR SEQRES 21 A 309 LYS PHE GLY LEU GLN SER GLY GLY ARG THR GLU SER ILE SEQRES 22 A 309 LEU ILE SER LEU PRO PRO ARG ALA ARG TRP GLY TYR ASN SEQRES 23 A 309 TRP GLN PRO GLU PRO GLY THR PRO GLU ALA ARG LEU THR SEQRES 24 A 309 GLU TYR PHE LEU THR LYS ARG GLN TRP VAL SEQRES 1 B 309 MSE ALA HIS HIS HIS HIS HIS HIS MSE SER LEU ALA VAL SEQRES 2 B 309 GLU ALA VAL LYS ASP PHE LEU LEU LYS LEU GLN ASP ASP SEQRES 3 B 309 ILE CYS GLU ALA LEU GLU ALA GLU ASP GLY GLN ALA THR SEQRES 4 B 309 PHE VAL GLU ASP LYS TRP THR ARG GLU GLY GLY GLY GLY SEQRES 5 B 309 GLY ARG THR ARG VAL MSE VAL ASP GLY ALA VAL ILE GLU SEQRES 6 B 309 LYS GLY GLY VAL ASN PHE SER HIS VAL TYR GLY LYS GLY SEQRES 7 B 309 LEU PRO MSE SER SER THR GLU ARG HIS PRO ASP ILE ALA SEQRES 8 B 309 GLY CYS ASN PHE GLU ALA MSE GLY VAL SER LEU VAL ILE SEQRES 9 B 309 HIS PRO LYS ASN PRO HIS VAL PRO THR SER HIS ALA ASN SEQRES 10 B 309 VAL ARG LEU PHE VAL ALA GLU ARG GLU GLY LYS GLU PRO SEQRES 11 B 309 VAL TRP TRP PHE GLY GLY GLY PHE ASP LEU THR PRO TYR SEQRES 12 B 309 TYR ALA VAL GLU GLU ASP CYS ARG ASP PHE HIS GLN VAL SEQRES 13 B 309 ALA GLN ASP LEU CYS LYS PRO PHE GLY ALA ASP VAL TYR SEQRES 14 B 309 ALA ARG PHE LYS GLY TRP CYS ASP GLU TYR PHE PHE ILE SEQRES 15 B 309 PRO TYR ARG ASN GLU ALA ARG GLY ILE GLY GLY LEU PHE SEQRES 16 B 309 PHE ASP ASP LEU ASN GLU TRP PRO PHE GLU LYS CYS PHE SEQRES 17 B 309 GLU PHE VAL GLN ALA VAL GLY LYS GLY TYR MSE ASP ALA SEQRES 18 B 309 TYR ILE PRO ILE VAL ASN ARG ARG LYS ASN THR PRO TYR SEQRES 19 B 309 THR GLU GLN GLN VAL GLU PHE GLN GLU PHE ARG ARG GLY SEQRES 20 B 309 ARG TYR ALA GLU PHE ASN LEU VAL ILE ASP ARG GLY THR SEQRES 21 B 309 LYS PHE GLY LEU GLN SER GLY GLY ARG THR GLU SER ILE SEQRES 22 B 309 LEU ILE SER LEU PRO PRO ARG ALA ARG TRP GLY TYR ASN SEQRES 23 B 309 TRP GLN PRO GLU PRO GLY THR PRO GLU ALA ARG LEU THR SEQRES 24 B 309 GLU TYR PHE LEU THR LYS ARG GLN TRP VAL MODRES 1VJU MSE A 9 MET SELENOMETHIONINE MODRES 1VJU MSE A 58 MET SELENOMETHIONINE MODRES 1VJU MSE A 98 MET SELENOMETHIONINE MODRES 1VJU MSE A 219 MET SELENOMETHIONINE MODRES 1VJU MSE B 9 MET SELENOMETHIONINE MODRES 1VJU MSE B 58 MET SELENOMETHIONINE MODRES 1VJU MSE B 98 MET SELENOMETHIONINE MODRES 1VJU MSE B 219 MET SELENOMETHIONINE HET MSE A 9 8 HET MSE A 58 8 HET MSE A 98 8 HET MSE A 219 8 HET MSE B 9 8 HET MSE B 58 8 HET MSE B 98 8 HET MSE B 219 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 HOH *644(H2 O) HELIX 1 1 MSE A 9 GLY A 36 1 28 HELIX 2 2 VAL A 146 LYS A 162 1 17 HELIX 3 3 PRO A 163 GLY A 165 5 3 HELIX 4 4 ASP A 167 PHE A 180 1 14 HELIX 5 5 PRO A 183 ASN A 186 5 4 HELIX 6 6 PRO A 203 LYS A 230 1 28 HELIX 7 7 THR A 235 ILE A 256 1 22 HELIX 8 8 ASP A 257 SER A 266 1 10 HELIX 9 9 ARG A 269 LEU A 274 1 6 HELIX 10 10 ILE A 275 LEU A 277 5 3 HELIX 11 11 THR A 293 TYR A 301 1 9 HELIX 12 12 TYR A 301 ARG A 306 1 6 HELIX 13 13 HIS B 6 GLY B 36 1 31 HELIX 14 14 VAL B 146 LYS B 162 1 17 HELIX 15 15 PRO B 163 GLY B 165 5 3 HELIX 16 16 ASP B 167 PHE B 180 1 14 HELIX 17 17 PRO B 183 ASN B 186 5 4 HELIX 18 18 PRO B 203 LYS B 230 1 28 HELIX 19 19 THR B 235 ILE B 256 1 22 HELIX 20 20 ASP B 257 SER B 266 1 10 HELIX 21 21 ARG B 269 LEU B 274 1 6 HELIX 22 22 ILE B 275 LEU B 277 5 3 HELIX 23 23 THR B 293 TYR B 301 1 9 HELIX 24 24 TYR B 301 ARG B 306 1 6 SHEET 1 A 7 VAL A 41 ARG A 47 0 SHEET 2 A 7 GLY A 51 VAL A 59 -1 O VAL A 57 N VAL A 41 SHEET 3 A 7 ILE A 64 LYS A 77 -1 O HIS A 73 N GLY A 52 SHEET 4 A 7 ASN A 94 PRO A 106 -1 O SER A 101 N ASN A 70 SHEET 5 A 7 THR A 113 ARG A 125 -1 O LEU A 120 N MSE A 98 SHEET 6 A 7 LYS A 128 THR A 141 -1 O THR A 141 N THR A 113 SHEET 7 A 7 GLY A 192 LEU A 199 -1 O LEU A 199 N PHE A 134 SHEET 1 B 2 PHE A 181 ILE A 182 0 SHEET 2 B 2 GLU A 187 ALA A 188 -1 O GLU A 187 N ILE A 182 SHEET 1 C 7 VAL B 41 THR B 46 0 SHEET 2 C 7 GLY B 51 VAL B 59 -1 O VAL B 57 N VAL B 41 SHEET 3 C 7 ILE B 64 LYS B 77 -1 O HIS B 73 N GLY B 52 SHEET 4 C 7 ASN B 94 PRO B 106 -1 O SER B 101 N ASN B 70 SHEET 5 C 7 THR B 113 GLU B 124 -1 O VAL B 122 N GLU B 96 SHEET 6 C 7 VAL B 131 THR B 141 -1 O THR B 141 N THR B 113 SHEET 7 C 7 GLY B 192 LEU B 199 -1 O LEU B 199 N PHE B 134 SHEET 1 D 2 PHE B 181 ILE B 182 0 SHEET 2 D 2 GLU B 187 ALA B 188 -1 O GLU B 187 N ILE B 182 LINK C HIS A 8 N MSE A 9 1555 1555 1.33 LINK C MSE A 9 N SER A 10 1555 1555 1.33 LINK C VAL A 57 N MSE A 58 1555 1555 1.31 LINK C MSE A 58 N VAL A 59 1555 1555 1.34 LINK C ALA A 97 N MSE A 98 1555 1555 1.32 LINK C MSE A 98 N GLY A 99 1555 1555 1.34 LINK C TYR A 218 N MSE A 219 1555 1555 1.32 LINK C MSE A 219 N ASP A 220 1555 1555 1.32 LINK C HIS B 8 N MSE B 9 1555 1555 1.33 LINK C MSE B 9 N SER B 10 1555 1555 1.32 LINK C VAL B 57 N MSE B 58 1555 1555 1.33 LINK C MSE B 58 N VAL B 59 1555 1555 1.34 LINK C ALA B 97 N MSE B 98 1555 1555 1.32 LINK C MSE B 98 N GLY B 99 1555 1555 1.32 LINK C TYR B 218 N MSE B 219 1555 1555 1.33 LINK C MSE B 219 N ASP B 220 1555 1555 1.32 CRYST1 52.649 53.734 66.627 86.46 77.13 61.50 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018994 -0.010313 -0.004882 0.00000 SCALE2 0.000000 0.021176 0.001102 0.00000 SCALE3 0.000000 0.000000 0.015417 0.00000