data_1VKB # _entry.id 1VKB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VKB pdb_00001vkb 10.2210/pdb1vkb/pdb RCSB RCSB001945 ? ? WWPDB D_1000001945 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 354528 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1VKB _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2004-05-07 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a conserved hypothetical protein (gi: 13879369) from Mouse at 1.90 A resolution reveals a new fold.' _citation.journal_abbrev Proteins _citation.journal_volume 61 _citation.page_first 1132 _citation.page_last 1136 _citation.year 2005 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16224779 _citation.pdbx_database_id_DOI 10.1002/prot.20610 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Klock, H.E.' 1 ? primary 'Schwarzenbacher, R.' 2 ? primary 'Xu, Q.' 3 ? primary 'McMullan, D.' 4 ? primary 'Abdubek, P.' 5 ? primary 'Ambing, E.' 6 ? primary 'Axelrod, H.' 7 ? primary 'Biorac, T.' 8 ? primary 'Canaves, J.M.' 9 ? primary 'Chiu, H.J.' 10 ? primary 'Deacon, A.M.' 11 ? primary 'DiDonato, M.' 12 ? primary 'Elsliger, M.A.' 13 ? primary 'Godzik, A.' 14 ? primary 'Grittini, C.' 15 ? primary 'Grzechnik, S.K.' 16 ? primary 'Hale, J.' 17 ? primary 'Hampton, E.' 18 ? primary 'Han, G.W.' 19 ? primary 'Haugen, J.' 20 ? primary 'Hornsby, M.' 21 ? primary 'Jaroszewski, L.' 22 ? primary 'Koesema, E.' 23 ? primary 'Kreusch, A.' 24 ? primary 'Kuhn, P.' 25 ? primary 'Miller, M.D.' 26 ? primary 'Moy, K.' 27 ? primary 'Nigoghossian, E.' 28 ? primary 'Paulsen, J.' 29 ? primary 'Quijano, K.' 30 ? primary 'Reyes, R.' 31 ? primary 'Rife, C.' 32 ? primary 'Sims, E.' 33 ? primary 'Spraggon, G.' 34 ? primary 'Stevens, R.C.' 35 ? primary 'van den Bedem, H.' 36 ? primary 'Velasquez, J.' 37 ? primary 'Vincent, J.' 38 ? primary 'White, A.' 39 ? primary 'Wolf, G.' 40 ? primary 'Hodgson, K.O.' 41 ? primary 'Wooley, J.' 42 ? primary 'Lesley, S.A.' 43 ? primary 'Wilson, I.A.' 44 ? # _cell.length_a 85.745 _cell.length_b 85.745 _cell.length_c 42.858 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.entry_id 1VKB _cell.pdbx_unique_axis ? _cell.Z_PDB 6 # _symmetry.space_group_name_H-M 'P 65' _symmetry.entry_id 1VKB _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 170 _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein' 18560.783 1 ? ? ? ? 2 non-polymer syn 'FORMIC ACID' 46.025 3 ? ? ? ? 3 water nat water 18.015 108 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSDKIHHHHHHMAHIFVYGTLKRGQPNHKVMLDHSHGLAAFRGRGCTVESFPLVIAGEHNIPWLLYLPGKGHCVTGEIY EVDEQMLRFLDDFEDCPSMYQRTALQVQVLEWEGDGDPGDSVQCFVYTTATYAPEWLFLPYHESYDSEGPHGLRYNPREN R ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMAHIFVYGTLKRGQPNHKVMLDHSHGLAAFRGRGCTVESFPLVIAGEHNIPWLLYLPGKGHCVTGEIY EVDEQMLRFLDDFEDCPSMYQRTALQVQVLEWEGDGDPGDSVQCFVYTTATYAPEWLFLPYHESYDSEGPHGLRYNPREN R ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 354528 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MET n 1 14 ALA n 1 15 HIS n 1 16 ILE n 1 17 PHE n 1 18 VAL n 1 19 TYR n 1 20 GLY n 1 21 THR n 1 22 LEU n 1 23 LYS n 1 24 ARG n 1 25 GLY n 1 26 GLN n 1 27 PRO n 1 28 ASN n 1 29 HIS n 1 30 LYS n 1 31 VAL n 1 32 MET n 1 33 LEU n 1 34 ASP n 1 35 HIS n 1 36 SER n 1 37 HIS n 1 38 GLY n 1 39 LEU n 1 40 ALA n 1 41 ALA n 1 42 PHE n 1 43 ARG n 1 44 GLY n 1 45 ARG n 1 46 GLY n 1 47 CYS n 1 48 THR n 1 49 VAL n 1 50 GLU n 1 51 SER n 1 52 PHE n 1 53 PRO n 1 54 LEU n 1 55 VAL n 1 56 ILE n 1 57 ALA n 1 58 GLY n 1 59 GLU n 1 60 HIS n 1 61 ASN n 1 62 ILE n 1 63 PRO n 1 64 TRP n 1 65 LEU n 1 66 LEU n 1 67 TYR n 1 68 LEU n 1 69 PRO n 1 70 GLY n 1 71 LYS n 1 72 GLY n 1 73 HIS n 1 74 CYS n 1 75 VAL n 1 76 THR n 1 77 GLY n 1 78 GLU n 1 79 ILE n 1 80 TYR n 1 81 GLU n 1 82 VAL n 1 83 ASP n 1 84 GLU n 1 85 GLN n 1 86 MET n 1 87 LEU n 1 88 ARG n 1 89 PHE n 1 90 LEU n 1 91 ASP n 1 92 ASP n 1 93 PHE n 1 94 GLU n 1 95 ASP n 1 96 CYS n 1 97 PRO n 1 98 SER n 1 99 MET n 1 100 TYR n 1 101 GLN n 1 102 ARG n 1 103 THR n 1 104 ALA n 1 105 LEU n 1 106 GLN n 1 107 VAL n 1 108 GLN n 1 109 VAL n 1 110 LEU n 1 111 GLU n 1 112 TRP n 1 113 GLU n 1 114 GLY n 1 115 ASP n 1 116 GLY n 1 117 ASP n 1 118 PRO n 1 119 GLY n 1 120 ASP n 1 121 SER n 1 122 VAL n 1 123 GLN n 1 124 CYS n 1 125 PHE n 1 126 VAL n 1 127 TYR n 1 128 THR n 1 129 THR n 1 130 ALA n 1 131 THR n 1 132 TYR n 1 133 ALA n 1 134 PRO n 1 135 GLU n 1 136 TRP n 1 137 LEU n 1 138 PHE n 1 139 LEU n 1 140 PRO n 1 141 TYR n 1 142 HIS n 1 143 GLU n 1 144 SER n 1 145 TYR n 1 146 ASP n 1 147 SER n 1 148 GLU n 1 149 GLY n 1 150 PRO n 1 151 HIS n 1 152 GLY n 1 153 LEU n 1 154 ARG n 1 155 TYR n 1 156 ASN n 1 157 PRO n 1 158 ARG n 1 159 GLU n 1 160 ASN n 1 161 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q923B0_MOUSE _struct_ref.pdbx_db_accession Q923B0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAHIFVYGTLKRGQPNHKVMLDHSHGLAAFRGRGCTVESFPLVIAGEHNIPWLLYLPGKGHCVTGEIYEVDEQMLRFLDD FEDCPSMYQRTALQVQVLEWEGDGDPGDSVQCFVYTTATYAPEWLFLPYHESYDSEGPHGLRYNPRENR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VKB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 161 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q923B0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 149 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 149 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VKB MET A 1 ? UNP Q923B0 ? ? 'expression tag' -11 1 1 1VKB GLY A 2 ? UNP Q923B0 ? ? 'expression tag' -10 2 1 1VKB SER A 3 ? UNP Q923B0 ? ? 'expression tag' -9 3 1 1VKB ASP A 4 ? UNP Q923B0 ? ? 'expression tag' -8 4 1 1VKB LYS A 5 ? UNP Q923B0 ? ? 'expression tag' -7 5 1 1VKB ILE A 6 ? UNP Q923B0 ? ? 'expression tag' -6 6 1 1VKB HIS A 7 ? UNP Q923B0 ? ? 'expression tag' -5 7 1 1VKB HIS A 8 ? UNP Q923B0 ? ? 'expression tag' -4 8 1 1VKB HIS A 9 ? UNP Q923B0 ? ? 'expression tag' -3 9 1 1VKB HIS A 10 ? UNP Q923B0 ? ? 'expression tag' -2 10 1 1VKB HIS A 11 ? UNP Q923B0 ? ? 'expression tag' -1 11 1 1VKB HIS A 12 ? UNP Q923B0 ? ? 'expression tag' 0 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1VKB # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 49.29 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION,SITTING DROP,NANODROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '4.1 Acetate, 2.4 NaFormate, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.details ? _diffrn_detector.pdbx_collection_date 2003-11-07 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.742575 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_wavelength 1.742575 _diffrn_source.pdbx_wavelength_list ? # _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 50.00 _reflns.number_obs 14364 _reflns.percent_possible_obs 99.96 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 86.21 _reflns.B_iso_Wilson_estimate 26.50 _reflns.pdbx_redundancy 60.45 _reflns.pdbx_Rsym_value 0.048 _reflns.entry_id 1VKB _reflns.number_all ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 99.93 _reflns_shell.pdbx_Rsym_value 0.122 _reflns_shell.pdbx_redundancy 0.78 _reflns_shell.number_unique_all 2772 _reflns_shell.meanI_over_sigI_obs 27.43 _reflns_shell.Rmerge_I_obs ? _reflns_shell.percent_possible_obs ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 1.90 _refine.ls_d_res_low 42.87 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_obs 13625 _refine.ls_number_reflns_R_free 720 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_percent_reflns_obs 99.99 _refine.ls_R_factor_obs 0.13609 _refine.ls_R_factor_R_work 0.13416 _refine.ls_R_factor_R_free 0.17058 _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.B_iso_mean 18.317 _refine.aniso_B[1][1] 0.15 _refine.aniso_B[2][2] 0.15 _refine.aniso_B[3][3] -0.22 _refine.aniso_B[1][2] 0.07 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.details '1). HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 2). SS BOND BETWEEN CYS 35 AND CYS 62 IS MODELLED AS HALF OCCUPANCY.' _refine.pdbx_overall_ESU_R 0.104 _refine.pdbx_overall_ESU_R_Free 0.103 _refine.overall_SU_ML 0.059 _refine.overall_SU_B 3.733 _refine.correlation_coeff_Fo_to_Fc 0.967 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.entry_id 1VKB _refine.ls_R_factor_all ? _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1188 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 108 _refine_hist.number_atoms_total 1305 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 42.87 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1258 0.015 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1075 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1708 1.605 1.924 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2507 0.941 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 145 6.264 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 64 30.633 23.438 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 195 11.468 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7 13.450 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 178 0.109 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1388 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 268 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 207 0.199 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1053 0.190 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 680 0.084 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 88 0.156 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 12 0.166 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 46 0.237 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 12 0.259 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 761 2.227 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 301 0.634 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1207 3.168 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 567 4.950 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 501 6.652 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.950 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 1036 _refine_ls_shell.R_factor_R_work 0.105 _refine_ls_shell.percent_reflns_R_free 3.99 _refine_ls_shell.number_reflns_R_free 43 _refine_ls_shell.R_factor_R_free 0.188 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1VKB _struct.title 'Crystal structure of an aig2-like protein (a2ld1, ggact, mgc7867) from mus musculus at 1.90 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Gamma-glutamyl cyclotransferase-like fold, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, transferase ; _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.entry_id 1VKB # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 29 ? ASP A 34 ? HIS A 17 ASP A 22 1 ? 6 HELX_P HELX_P2 2 HIS A 35 ? GLY A 38 ? HIS A 23 GLY A 26 5 ? 4 HELX_P HELX_P3 3 ASP A 83 ? GLU A 94 ? ASP A 71 GLU A 82 1 ? 12 HELX_P HELX_P4 4 ALA A 133 ? LEU A 139 ? ALA A 121 LEU A 127 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 47 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 74 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 35 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 62 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.063 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id CYS _struct_mon_prot_cis.label_seq_id 96 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id CYS _struct_mon_prot_cis.auth_seq_id 84 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 97 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 85 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.75 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 54 ? ALA A 57 ? LEU A 42 ALA A 45 A 2 ILE A 62 ? LEU A 66 ? ILE A 50 LEU A 54 A 3 SER A 121 ? THR A 129 ? SER A 109 THR A 117 A 4 GLN A 101 ? TRP A 112 ? GLN A 89 TRP A 100 A 5 ALA A 40 ? THR A 48 ? ALA A 28 THR A 36 A 6 THR A 76 ? VAL A 82 ? THR A 64 VAL A 70 A 7 ALA A 14 ? VAL A 18 ? ALA A 2 VAL A 6 A 8 SER A 121 ? THR A 129 ? SER A 109 THR A 117 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 55 ? N VAL A 43 O TRP A 64 ? O TRP A 52 A 2 3 N LEU A 65 ? N LEU A 53 O THR A 129 ? O THR A 117 A 3 4 O VAL A 126 ? O VAL A 114 N THR A 103 ? N THR A 91 A 4 5 O GLN A 108 ? O GLN A 96 N CYS A 47 ? N CYS A 35 A 5 6 N ARG A 43 ? N ARG A 31 O ILE A 79 ? O ILE A 67 A 6 7 O VAL A 82 ? O VAL A 70 N ALA A 14 ? N ALA A 2 A 7 8 N PHE A 17 ? N PHE A 5 O PHE A 125 ? O PHE A 113 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FMT 150 ? 5 'BINDING SITE FOR RESIDUE FMT A 150' AC2 Software A FMT 151 ? 7 'BINDING SITE FOR RESIDUE FMT A 151' AC3 Software A FMT 152 ? 4 'BINDING SITE FOR RESIDUE FMT A 152' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASN A 28 ? ASN A 16 . ? 1_555 ? 2 AC1 5 GLU A 94 ? GLU A 82 . ? 1_555 ? 3 AC1 5 TYR A 155 ? TYR A 143 . ? 1_555 ? 4 AC1 5 ARG A 158 ? ARG A 146 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH A 164 . ? 1_555 ? 6 AC2 7 VAL A 18 ? VAL A 6 . ? 1_555 ? 7 AC2 7 TYR A 19 ? TYR A 7 . ? 1_555 ? 8 AC2 7 GLY A 20 ? GLY A 8 . ? 1_555 ? 9 AC2 7 THR A 21 ? THR A 9 . ? 1_555 ? 10 AC2 7 LEU A 22 ? LEU A 10 . ? 1_555 ? 11 AC2 7 HOH E . ? HOH A 154 . ? 1_555 ? 12 AC2 7 HOH E . ? HOH A 167 . ? 1_555 ? 13 AC3 4 ARG A 24 ? ARG A 12 . ? 1_555 ? 14 AC3 4 HIS A 29 ? HIS A 17 . ? 1_555 ? 15 AC3 4 LEU A 33 ? LEU A 21 . ? 1_555 ? 16 AC3 4 HOH E . ? HOH A 193 . ? 1_555 ? # _atom_sites.entry_id 1VKB _atom_sites.fract_transf_matrix[1][1] 0.011662 _atom_sites.fract_transf_matrix[1][2] 0.006733 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013467 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023333 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 ? ? ? A . n A 1 10 HIS 10 -2 ? ? ? A . n A 1 11 HIS 11 -1 -1 HIS HIS A . n A 1 12 HIS 12 0 0 HIS HIS A . n A 1 13 MET 13 1 1 MET MET A . n A 1 14 ALA 14 2 2 ALA ALA A . n A 1 15 HIS 15 3 3 HIS HIS A . n A 1 16 ILE 16 4 4 ILE ILE A . n A 1 17 PHE 17 5 5 PHE PHE A . n A 1 18 VAL 18 6 6 VAL VAL A . n A 1 19 TYR 19 7 7 TYR TYR A . n A 1 20 GLY 20 8 8 GLY GLY A . n A 1 21 THR 21 9 9 THR THR A . n A 1 22 LEU 22 10 10 LEU LEU A . n A 1 23 LYS 23 11 11 LYS LYS A . n A 1 24 ARG 24 12 12 ARG ARG A . n A 1 25 GLY 25 13 13 GLY GLY A . n A 1 26 GLN 26 14 14 GLN GLN A . n A 1 27 PRO 27 15 15 PRO PRO A . n A 1 28 ASN 28 16 16 ASN ASN A . n A 1 29 HIS 29 17 17 HIS HIS A . n A 1 30 LYS 30 18 18 LYS LYS A . n A 1 31 VAL 31 19 19 VAL VAL A . n A 1 32 MET 32 20 20 MET MET A . n A 1 33 LEU 33 21 21 LEU LEU A . n A 1 34 ASP 34 22 22 ASP ASP A . n A 1 35 HIS 35 23 23 HIS HIS A . n A 1 36 SER 36 24 24 SER SER A . n A 1 37 HIS 37 25 25 HIS HIS A . n A 1 38 GLY 38 26 26 GLY GLY A . n A 1 39 LEU 39 27 27 LEU LEU A . n A 1 40 ALA 40 28 28 ALA ALA A . n A 1 41 ALA 41 29 29 ALA ALA A . n A 1 42 PHE 42 30 30 PHE PHE A . n A 1 43 ARG 43 31 31 ARG ARG A . n A 1 44 GLY 44 32 32 GLY GLY A . n A 1 45 ARG 45 33 33 ARG ARG A . n A 1 46 GLY 46 34 34 GLY GLY A . n A 1 47 CYS 47 35 35 CYS CYS A . n A 1 48 THR 48 36 36 THR THR A . n A 1 49 VAL 49 37 37 VAL VAL A . n A 1 50 GLU 50 38 38 GLU GLU A . n A 1 51 SER 51 39 39 SER SER A . n A 1 52 PHE 52 40 40 PHE PHE A . n A 1 53 PRO 53 41 41 PRO PRO A . n A 1 54 LEU 54 42 42 LEU LEU A . n A 1 55 VAL 55 43 43 VAL VAL A . n A 1 56 ILE 56 44 44 ILE ILE A . n A 1 57 ALA 57 45 45 ALA ALA A . n A 1 58 GLY 58 46 46 GLY GLY A . n A 1 59 GLU 59 47 47 GLU GLU A . n A 1 60 HIS 60 48 48 HIS HIS A . n A 1 61 ASN 61 49 49 ASN ASN A . n A 1 62 ILE 62 50 50 ILE ILE A . n A 1 63 PRO 63 51 51 PRO PRO A . n A 1 64 TRP 64 52 52 TRP TRP A . n A 1 65 LEU 65 53 53 LEU LEU A . n A 1 66 LEU 66 54 54 LEU LEU A . n A 1 67 TYR 67 55 55 TYR TYR A . n A 1 68 LEU 68 56 56 LEU LEU A . n A 1 69 PRO 69 57 57 PRO PRO A . n A 1 70 GLY 70 58 58 GLY GLY A . n A 1 71 LYS 71 59 59 LYS LYS A . n A 1 72 GLY 72 60 60 GLY GLY A . n A 1 73 HIS 73 61 61 HIS HIS A . n A 1 74 CYS 74 62 62 CYS CYS A . n A 1 75 VAL 75 63 63 VAL VAL A . n A 1 76 THR 76 64 64 THR THR A . n A 1 77 GLY 77 65 65 GLY GLY A . n A 1 78 GLU 78 66 66 GLU GLU A . n A 1 79 ILE 79 67 67 ILE ILE A . n A 1 80 TYR 80 68 68 TYR TYR A . n A 1 81 GLU 81 69 69 GLU GLU A . n A 1 82 VAL 82 70 70 VAL VAL A . n A 1 83 ASP 83 71 71 ASP ASP A . n A 1 84 GLU 84 72 72 GLU GLU A . n A 1 85 GLN 85 73 73 GLN GLN A . n A 1 86 MET 86 74 74 MET MET A . n A 1 87 LEU 87 75 75 LEU LEU A . n A 1 88 ARG 88 76 76 ARG ARG A . n A 1 89 PHE 89 77 77 PHE PHE A . n A 1 90 LEU 90 78 78 LEU LEU A . n A 1 91 ASP 91 79 79 ASP ASP A . n A 1 92 ASP 92 80 80 ASP ASP A . n A 1 93 PHE 93 81 81 PHE PHE A . n A 1 94 GLU 94 82 82 GLU GLU A . n A 1 95 ASP 95 83 83 ASP ASP A . n A 1 96 CYS 96 84 84 CYS CYS A . n A 1 97 PRO 97 85 85 PRO PRO A . n A 1 98 SER 98 86 86 SER SER A . n A 1 99 MET 99 87 87 MET MET A . n A 1 100 TYR 100 88 88 TYR TYR A . n A 1 101 GLN 101 89 89 GLN GLN A . n A 1 102 ARG 102 90 90 ARG ARG A . n A 1 103 THR 103 91 91 THR THR A . n A 1 104 ALA 104 92 92 ALA ALA A . n A 1 105 LEU 105 93 93 LEU LEU A . n A 1 106 GLN 106 94 94 GLN GLN A . n A 1 107 VAL 107 95 95 VAL VAL A . n A 1 108 GLN 108 96 96 GLN GLN A . n A 1 109 VAL 109 97 97 VAL VAL A . n A 1 110 LEU 110 98 98 LEU LEU A . n A 1 111 GLU 111 99 99 GLU GLU A . n A 1 112 TRP 112 100 100 TRP TRP A . n A 1 113 GLU 113 101 101 GLU GLU A . n A 1 114 GLY 114 102 ? ? ? A . n A 1 115 ASP 115 103 ? ? ? A . n A 1 116 GLY 116 104 ? ? ? A . n A 1 117 ASP 117 105 105 ASP ASP A . n A 1 118 PRO 118 106 106 PRO PRO A . n A 1 119 GLY 119 107 107 GLY GLY A . n A 1 120 ASP 120 108 108 ASP ASP A . n A 1 121 SER 121 109 109 SER SER A . n A 1 122 VAL 122 110 110 VAL VAL A . n A 1 123 GLN 123 111 111 GLN GLN A . n A 1 124 CYS 124 112 112 CYS CYS A . n A 1 125 PHE 125 113 113 PHE PHE A . n A 1 126 VAL 126 114 114 VAL VAL A . n A 1 127 TYR 127 115 115 TYR TYR A . n A 1 128 THR 128 116 116 THR THR A . n A 1 129 THR 129 117 117 THR THR A . n A 1 130 ALA 130 118 118 ALA ALA A . n A 1 131 THR 131 119 119 THR THR A . n A 1 132 TYR 132 120 120 TYR TYR A . n A 1 133 ALA 133 121 121 ALA ALA A . n A 1 134 PRO 134 122 122 PRO PRO A . n A 1 135 GLU 135 123 123 GLU GLU A . n A 1 136 TRP 136 124 124 TRP TRP A . n A 1 137 LEU 137 125 125 LEU LEU A . n A 1 138 PHE 138 126 126 PHE PHE A . n A 1 139 LEU 139 127 127 LEU LEU A . n A 1 140 PRO 140 128 128 PRO PRO A . n A 1 141 TYR 141 129 129 TYR TYR A . n A 1 142 HIS 142 130 130 HIS HIS A . n A 1 143 GLU 143 131 131 GLU GLU A . n A 1 144 SER 144 132 132 SER SER A . n A 1 145 TYR 145 133 133 TYR TYR A . n A 1 146 ASP 146 134 134 ASP ASP A . n A 1 147 SER 147 135 135 SER SER A . n A 1 148 GLU 148 136 136 GLU GLU A . n A 1 149 GLY 149 137 137 GLY GLY A . n A 1 150 PRO 150 138 138 PRO PRO A . n A 1 151 HIS 151 139 139 HIS HIS A . n A 1 152 GLY 152 140 140 GLY GLY A . n A 1 153 LEU 153 141 141 LEU LEU A . n A 1 154 ARG 154 142 142 ARG ARG A . n A 1 155 TYR 155 143 143 TYR TYR A . n A 1 156 ASN 156 144 144 ASN ASN A . n A 1 157 PRO 157 145 145 PRO PRO A . n A 1 158 ARG 158 146 146 ARG ARG A . n A 1 159 GLU 159 147 147 GLU GLU A . n A 1 160 ASN 160 148 148 ASN ASN A . n A 1 161 ARG 161 149 149 ARG ARG A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMT 1 150 1 FMT FMT A . C 2 FMT 1 151 2 FMT FMT A . D 2 FMT 1 152 3 FMT FMT A . E 3 HOH 1 153 4 HOH HOH A . E 3 HOH 2 154 5 HOH HOH A . E 3 HOH 3 155 6 HOH HOH A . E 3 HOH 4 156 7 HOH HOH A . E 3 HOH 5 157 8 HOH HOH A . E 3 HOH 6 158 9 HOH HOH A . E 3 HOH 7 159 10 HOH HOH A . E 3 HOH 8 160 11 HOH HOH A . E 3 HOH 9 161 12 HOH HOH A . E 3 HOH 10 162 13 HOH HOH A . E 3 HOH 11 163 14 HOH HOH A . E 3 HOH 12 164 15 HOH HOH A . E 3 HOH 13 165 16 HOH HOH A . E 3 HOH 14 166 17 HOH HOH A . E 3 HOH 15 167 18 HOH HOH A . E 3 HOH 16 168 19 HOH HOH A . E 3 HOH 17 169 20 HOH HOH A . E 3 HOH 18 170 21 HOH HOH A . E 3 HOH 19 171 22 HOH HOH A . E 3 HOH 20 172 23 HOH HOH A . E 3 HOH 21 173 24 HOH HOH A . E 3 HOH 22 174 25 HOH HOH A . E 3 HOH 23 175 26 HOH HOH A . E 3 HOH 24 176 27 HOH HOH A . E 3 HOH 25 177 28 HOH HOH A . E 3 HOH 26 178 29 HOH HOH A . E 3 HOH 27 179 30 HOH HOH A . E 3 HOH 28 180 31 HOH HOH A . E 3 HOH 29 181 32 HOH HOH A . E 3 HOH 30 182 33 HOH HOH A . E 3 HOH 31 183 34 HOH HOH A . E 3 HOH 32 184 35 HOH HOH A . E 3 HOH 33 185 36 HOH HOH A . E 3 HOH 34 186 37 HOH HOH A . E 3 HOH 35 187 38 HOH HOH A . E 3 HOH 36 188 39 HOH HOH A . E 3 HOH 37 189 40 HOH HOH A . E 3 HOH 38 190 41 HOH HOH A . E 3 HOH 39 191 42 HOH HOH A . E 3 HOH 40 192 43 HOH HOH A . E 3 HOH 41 193 44 HOH HOH A . E 3 HOH 42 194 45 HOH HOH A . E 3 HOH 43 195 46 HOH HOH A . E 3 HOH 44 196 47 HOH HOH A . E 3 HOH 45 197 48 HOH HOH A . E 3 HOH 46 198 49 HOH HOH A . E 3 HOH 47 199 50 HOH HOH A . E 3 HOH 48 200 51 HOH HOH A . E 3 HOH 49 201 52 HOH HOH A . E 3 HOH 50 202 53 HOH HOH A . E 3 HOH 51 203 54 HOH HOH A . E 3 HOH 52 204 55 HOH HOH A . E 3 HOH 53 205 56 HOH HOH A . E 3 HOH 54 206 57 HOH HOH A . E 3 HOH 55 207 58 HOH HOH A . E 3 HOH 56 208 59 HOH HOH A . E 3 HOH 57 209 60 HOH HOH A . E 3 HOH 58 210 61 HOH HOH A . E 3 HOH 59 211 62 HOH HOH A . E 3 HOH 60 212 63 HOH HOH A . E 3 HOH 61 213 64 HOH HOH A . E 3 HOH 62 214 65 HOH HOH A . E 3 HOH 63 215 66 HOH HOH A . E 3 HOH 64 216 67 HOH HOH A . E 3 HOH 65 217 68 HOH HOH A . E 3 HOH 66 218 69 HOH HOH A . E 3 HOH 67 219 70 HOH HOH A . E 3 HOH 68 220 71 HOH HOH A . E 3 HOH 69 221 72 HOH HOH A . E 3 HOH 70 222 73 HOH HOH A . E 3 HOH 71 223 74 HOH HOH A . E 3 HOH 72 224 75 HOH HOH A . E 3 HOH 73 225 76 HOH HOH A . E 3 HOH 74 226 77 HOH HOH A . E 3 HOH 75 227 78 HOH HOH A . E 3 HOH 76 228 79 HOH HOH A . E 3 HOH 77 229 80 HOH HOH A . E 3 HOH 78 230 81 HOH HOH A . E 3 HOH 79 231 82 HOH HOH A . E 3 HOH 80 232 83 HOH HOH A . E 3 HOH 81 233 84 HOH HOH A . E 3 HOH 82 234 85 HOH HOH A . E 3 HOH 83 235 86 HOH HOH A . E 3 HOH 84 236 87 HOH HOH A . E 3 HOH 85 237 88 HOH HOH A . E 3 HOH 86 238 89 HOH HOH A . E 3 HOH 87 239 90 HOH HOH A . E 3 HOH 88 240 91 HOH HOH A . E 3 HOH 89 241 92 HOH HOH A . E 3 HOH 90 242 93 HOH HOH A . E 3 HOH 91 243 94 HOH HOH A . E 3 HOH 92 244 95 HOH HOH A . E 3 HOH 93 245 96 HOH HOH A . E 3 HOH 94 246 97 HOH HOH A . E 3 HOH 95 247 98 HOH HOH A . E 3 HOH 96 248 99 HOH HOH A . E 3 HOH 97 249 100 HOH HOH A . E 3 HOH 98 250 101 HOH HOH A . E 3 HOH 99 251 102 HOH HOH A . E 3 HOH 100 252 103 HOH HOH A . E 3 HOH 101 253 104 HOH HOH A . E 3 HOH 102 254 105 HOH HOH A . E 3 HOH 103 255 106 HOH HOH A . E 3 HOH 104 256 107 HOH HOH A . E 3 HOH 105 257 108 HOH HOH A . E 3 HOH 106 258 109 HOH HOH A . E 3 HOH 107 259 110 HOH HOH A . E 3 HOH 108 260 111 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-05-18 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_ref_seq_dif 4 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_ref_seq_dif.details' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details . _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 26.4660 _pdbx_refine_tls.origin_y 26.0700 _pdbx_refine_tls.origin_z -0.0840 _pdbx_refine_tls.T[1][1] -0.0332 _pdbx_refine_tls.T[2][2] -0.0305 _pdbx_refine_tls.T[3][3] -0.0198 _pdbx_refine_tls.T[1][2] 0.0110 _pdbx_refine_tls.T[1][3] 0.0061 _pdbx_refine_tls.T[2][3] 0.0056 _pdbx_refine_tls.L[1][1] 0.7270 _pdbx_refine_tls.L[2][2] 1.3781 _pdbx_refine_tls.L[3][3] 0.9496 _pdbx_refine_tls.L[1][2] -0.1209 _pdbx_refine_tls.L[1][3] -0.0688 _pdbx_refine_tls.L[2][3] 0.5684 _pdbx_refine_tls.S[1][1] -0.0430 _pdbx_refine_tls.S[2][2] 0.0064 _pdbx_refine_tls.S[3][3] 0.0366 _pdbx_refine_tls.S[1][2] -0.0205 _pdbx_refine_tls.S[1][3] -0.0447 _pdbx_refine_tls.S[2][3] 0.0671 _pdbx_refine_tls.S[2][1] 0.0076 _pdbx_refine_tls.S[3][1] 0.0852 _pdbx_refine_tls.S[3][2] -0.0009 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 11 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 161 _pdbx_refine_tls_group.selection ALL _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 149 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SHELX 'model building' . ? 3 autoSHARP phasing . ? 4 SOLOMON phasing . ? 5 REFMAC refinement 5.2.0001 ? 6 SHELX phasing . ? 7 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 134 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 134 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 134 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.16 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 5.86 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id MET _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 1 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -123.51 _pdbx_validate_torsion.psi -169.58 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS -1 ? CG ? A HIS 11 CG 2 1 Y 1 A HIS -1 ? ND1 ? A HIS 11 ND1 3 1 Y 1 A HIS -1 ? CD2 ? A HIS 11 CD2 4 1 Y 1 A HIS -1 ? CE1 ? A HIS 11 CE1 5 1 Y 1 A HIS -1 ? NE2 ? A HIS 11 NE2 6 1 Y 1 A LEU 27 ? CD1 ? A LEU 39 CD1 7 1 Y 1 A LEU 27 ? CD2 ? A LEU 39 CD2 8 1 Y 1 A ASP 105 ? N ? A ASP 117 N 9 1 Y 1 A ASP 105 ? CA ? A ASP 117 CA 10 1 Y 1 A ASP 105 ? CB ? A ASP 117 CB 11 1 Y 1 A ASP 105 ? CG ? A ASP 117 CG 12 1 Y 1 A ASP 105 ? OD1 ? A ASP 117 OD1 13 1 Y 1 A ASP 105 ? OD2 ? A ASP 117 OD2 14 1 Y 1 A GLU 147 ? OE1 ? A GLU 159 OE1 15 1 Y 1 A GLU 147 ? OE2 ? A GLU 159 OE2 16 1 Y 1 A ARG 149 ? CG ? A ARG 161 CG 17 1 Y 1 A ARG 149 ? CD ? A ARG 161 CD 18 1 Y 1 A ARG 149 ? NE ? A ARG 161 NE 19 1 Y 1 A ARG 149 ? CZ ? A ARG 161 CZ 20 1 Y 1 A ARG 149 ? NH1 ? A ARG 161 NH1 21 1 Y 1 A ARG 149 ? NH2 ? A ARG 161 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -11 ? A MET 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A HIS -3 ? A HIS 9 10 1 Y 1 A HIS -2 ? A HIS 10 11 1 Y 1 A GLY 102 ? A GLY 114 12 1 Y 1 A ASP 103 ? A ASP 115 13 1 Y 1 A GLY 104 ? A GLY 116 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FORMIC ACID' FMT 3 water HOH #