HEADER LYASE 13-MAY-04 1VKE TITLE CRYSTAL STRUCTURE OF CARBOXYMUCONOLACTONE DECARBOXYLASE FAMILY PROTEIN TITLE 2 POSSIBLY INVOLVED IN ANTIOXIDATIVE RESPONSE (TM1620) FROM THERMOTOGA TITLE 3 MARITIMA AT 1.56 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOXYMUCONOLACTONE DECARBOXYLASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 EC: 4.1.-.-; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: POSSIBLY INVOLVED IN ANTIOXIDATIVE RESPONSE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM1620; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM1620, CARBOXYMUCONOLACTONE DECARBOXYLASE FAMILY PROTEIN POSSIBLY KEYWDS 2 INVOLVED IN ANTIOXIDATIVE RESPONSE, STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI, JOINT CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 10 20-NOV-24 1VKE 1 REMARK REVDAT 9 20-SEP-23 1VKE 1 REMARK REVDAT 8 25-JAN-23 1VKE 1 REMARK SEQADV REVDAT 7 13-JUL-11 1VKE 1 VERSN REVDAT 6 24-FEB-09 1VKE 1 VERSN REVDAT 5 28-MAR-06 1VKE 1 JRNL REVDAT 4 18-JAN-05 1VKE 1 AUTHOR KEYWDS REMARK REVDAT 3 17-AUG-04 1VKE 1 COMPND HEADER KEYWDS REVDAT 2 10-AUG-04 1VKE 1 JRNL TITLE COMPND KEYWDS REVDAT 1 08-JUN-04 1VKE 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF CARBOXYMUCONOLACTONE DECARBOXYLASE JRNL TITL 2 FAMILY PROTEIN POSSIBLY INVOLVED IN ANTIOXIDATIVE RESPONSE JRNL TITL 3 (TM1620) FROM THERMOTOGA MARITIMA AT 1.56 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 101346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5361 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4242 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 240 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4870 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 435 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.77000 REMARK 3 B22 (A**2) : -0.82000 REMARK 3 B33 (A**2) : 1.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.85000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.800 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5038 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4871 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6795 ; 1.440 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11214 ; 0.863 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 627 ; 4.622 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 227 ;24.844 ;23.172 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 932 ;11.943 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;23.032 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 815 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5515 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1029 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1272 ; 0.322 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4871 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2860 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 334 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.078 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.269 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3248 ; 1.956 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1318 ; 0.480 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5079 ; 2.732 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1963 ; 4.770 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1716 ; 7.281 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 17 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1170 -20.7540 9.9650 REMARK 3 T TENSOR REMARK 3 T11: 0.2786 T22: -0.0707 REMARK 3 T33: 0.0683 T12: 0.0829 REMARK 3 T13: -0.1262 T23: -0.0949 REMARK 3 L TENSOR REMARK 3 L11: 10.1518 L22: 18.8357 REMARK 3 L33: 36.7294 L12: 0.7200 REMARK 3 L13: -5.4871 L23: -6.1158 REMARK 3 S TENSOR REMARK 3 S11: 0.3850 S12: 0.4466 S13: 0.6302 REMARK 3 S21: -1.1433 S22: 0.6246 S23: 0.8245 REMARK 3 S31: 2.4881 S32: 0.5654 S33: -1.0096 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 2 E 17 REMARK 3 ORIGIN FOR THE GROUP (A): 32.7620 -16.3990 26.8830 REMARK 3 T TENSOR REMARK 3 T11: 0.0440 T22: 0.0230 REMARK 3 T33: 0.1562 T12: 0.0134 REMARK 3 T13: 0.1060 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 18.9984 L22: 27.0678 REMARK 3 L33: 1.7095 L12: 20.3422 REMARK 3 L13: 4.3721 L23: 2.7529 REMARK 3 S TENSOR REMARK 3 S11: -0.2800 S12: -0.2445 S13: -0.5289 REMARK 3 S21: -0.7143 S22: -0.0453 S23: -0.9618 REMARK 3 S31: 0.3326 S32: 0.0295 S33: 0.3254 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): -1.4960 -17.2140 17.9610 REMARK 3 T TENSOR REMARK 3 T11: 0.1342 T22: 0.0539 REMARK 3 T33: 0.1865 T12: -0.0418 REMARK 3 T13: -0.0056 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 3.2729 L22: 7.8036 REMARK 3 L33: 11.4058 L12: -4.8119 REMARK 3 L13: 5.5458 L23: -9.0376 REMARK 3 S TENSOR REMARK 3 S11: 0.3467 S12: -0.0478 S13: -0.3826 REMARK 3 S21: -0.6883 S22: -0.0350 S23: 0.1311 REMARK 3 S31: 0.9380 S32: -0.3263 S33: -0.3117 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 39 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0120 14.7610 8.3580 REMARK 3 T TENSOR REMARK 3 T11: 0.1036 T22: 0.1604 REMARK 3 T33: 0.0016 T12: -0.0204 REMARK 3 T13: 0.0211 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 11.3562 L22: 3.0412 REMARK 3 L33: 6.5571 L12: 5.1714 REMARK 3 L13: 8.4753 L23: 4.1657 REMARK 3 S TENSOR REMARK 3 S11: -0.2593 S12: 0.8275 S13: 0.2384 REMARK 3 S21: -0.2159 S22: 0.2881 S23: 0.0179 REMARK 3 S31: -0.1093 S32: 0.5765 S33: -0.0288 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 21 C 39 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3110 2.4680 43.5510 REMARK 3 T TENSOR REMARK 3 T11: 0.1765 T22: 0.0959 REMARK 3 T33: 0.0235 T12: 0.0186 REMARK 3 T13: -0.0100 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 4.3422 L22: 5.3789 REMARK 3 L33: 3.4852 L12: 3.6515 REMARK 3 L13: -3.1826 L23: -3.8184 REMARK 3 S TENSOR REMARK 3 S11: 0.1392 S12: -0.3008 S13: 0.1103 REMARK 3 S21: 0.4969 S22: 0.0278 S23: 0.0458 REMARK 3 S31: -0.1513 S32: 0.1161 S33: -0.1670 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 19 D 39 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5730 19.5390 12.9030 REMARK 3 T TENSOR REMARK 3 T11: 0.1191 T22: 0.0657 REMARK 3 T33: 0.0875 T12: 0.0115 REMARK 3 T13: -0.0094 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 4.8317 L22: 4.3674 REMARK 3 L33: 4.9674 L12: 4.2421 REMARK 3 L13: 4.1652 L23: 3.8485 REMARK 3 S TENSOR REMARK 3 S11: -0.2349 S12: 0.0178 S13: 0.4805 REMARK 3 S21: -0.0592 S22: -0.1427 S23: 0.2833 REMARK 3 S31: -0.3708 S32: -0.2276 S33: 0.3776 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 19 E 39 REMARK 3 ORIGIN FOR THE GROUP (A): 29.9260 -7.1370 39.0710 REMARK 3 T TENSOR REMARK 3 T11: 0.1007 T22: 0.0688 REMARK 3 T33: 0.0885 T12: 0.0223 REMARK 3 T13: 0.0123 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 6.8784 L22: 5.7650 REMARK 3 L33: 2.0407 L12: 6.2576 REMARK 3 L13: -2.9815 L23: -2.6707 REMARK 3 S TENSOR REMARK 3 S11: -0.2491 S12: -0.0678 S13: -0.4776 REMARK 3 S21: 0.0057 S22: 0.0116 S23: -0.4656 REMARK 3 S31: 0.1549 S32: 0.1932 S33: 0.2376 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 20 F 39 REMARK 3 ORIGIN FOR THE GROUP (A): -6.0930 -12.4360 27.5950 REMARK 3 T TENSOR REMARK 3 T11: 0.0263 T22: 0.1641 REMARK 3 T33: 0.1623 T12: -0.0002 REMARK 3 T13: 0.0373 T23: 0.0716 REMARK 3 L TENSOR REMARK 3 L11: 4.8477 L22: 6.0851 REMARK 3 L33: 5.6250 L12: -4.7546 REMARK 3 L13: 4.7197 L23: -5.1338 REMARK 3 S TENSOR REMARK 3 S11: -0.3557 S12: -0.4147 S13: -0.1681 REMARK 3 S21: 0.2337 S22: 0.4964 S23: 0.2981 REMARK 3 S31: -0.0590 S32: -0.7725 S33: -0.1407 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5870 -6.1360 7.5300 REMARK 3 T TENSOR REMARK 3 T11: 0.0889 T22: 0.0937 REMARK 3 T33: 0.0793 T12: -0.0247 REMARK 3 T13: 0.0079 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 0.5643 L22: 0.8169 REMARK 3 L33: 1.7148 L12: -0.0399 REMARK 3 L13: -0.1236 L23: 0.0520 REMARK 3 S TENSOR REMARK 3 S11: -0.0842 S12: 0.1490 S13: -0.2346 REMARK 3 S21: -0.0804 S22: 0.0581 S23: 0.0395 REMARK 3 S31: 0.0731 S32: -0.0701 S33: 0.0262 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 40 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): 30.4250 6.0260 18.9470 REMARK 3 T TENSOR REMARK 3 T11: 0.0744 T22: 0.0962 REMARK 3 T33: 0.0528 T12: 0.0000 REMARK 3 T13: 0.0149 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 2.5661 L22: 0.4507 REMARK 3 L33: 0.6467 L12: -0.0566 REMARK 3 L13: 0.3107 L23: -0.1252 REMARK 3 S TENSOR REMARK 3 S11: 0.0913 S12: 0.2368 S13: -0.1175 REMARK 3 S21: 0.0240 S22: -0.0431 S23: -0.1593 REMARK 3 S31: -0.0063 S32: 0.0789 S33: -0.0482 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 40 C 120 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5100 15.4620 33.3270 REMARK 3 T TENSOR REMARK 3 T11: 0.1364 T22: 0.0789 REMARK 3 T33: 0.0428 T12: 0.0029 REMARK 3 T13: -0.0052 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.3745 L22: 1.3852 REMARK 3 L33: 0.7225 L12: 0.0746 REMARK 3 L13: -0.1236 L23: 0.0171 REMARK 3 S TENSOR REMARK 3 S11: -0.0538 S12: -0.1144 S13: 0.0867 REMARK 3 S21: 0.1216 S22: 0.0194 S23: 0.0012 REMARK 3 S31: -0.0932 S32: -0.0194 S33: 0.0344 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 40 D 119 REMARK 3 ORIGIN FOR THE GROUP (A): -2.1660 8.7470 17.5300 REMARK 3 T TENSOR REMARK 3 T11: 0.0763 T22: 0.0909 REMARK 3 T33: 0.0498 T12: 0.0326 REMARK 3 T13: 0.0033 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 2.8507 L22: 1.0578 REMARK 3 L33: 0.7364 L12: 0.0892 REMARK 3 L13: 0.4961 L23: -0.0127 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: -0.0541 S13: 0.0655 REMARK 3 S21: 0.0556 S22: 0.0924 S23: 0.0982 REMARK 3 S31: -0.1738 S32: -0.1872 S33: -0.0349 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 40 E 121 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9150 -17.5260 30.8530 REMARK 3 T TENSOR REMARK 3 T11: 0.1101 T22: 0.0363 REMARK 3 T33: 0.0863 T12: 0.0093 REMARK 3 T13: 0.0141 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.4419 L22: 2.5511 REMARK 3 L33: 0.0553 L12: -0.0464 REMARK 3 L13: 0.1435 L23: -0.1643 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: -0.0275 S13: -0.1022 REMARK 3 S21: 0.0158 S22: 0.1051 S23: -0.0293 REMARK 3 S31: 0.1457 S32: -0.0600 S33: -0.1026 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 40 F 116 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6510 -7.5440 39.6930 REMARK 3 T TENSOR REMARK 3 T11: 0.1012 T22: 0.1115 REMARK 3 T33: 0.0736 T12: 0.0538 REMARK 3 T13: 0.0805 T23: 0.0635 REMARK 3 L TENSOR REMARK 3 L11: 1.3121 L22: 1.9739 REMARK 3 L33: 2.9862 L12: -0.3446 REMARK 3 L13: 0.5239 L23: -1.0842 REMARK 3 S TENSOR REMARK 3 S11: -0.1210 S12: -0.1904 S13: -0.1269 REMARK 3 S21: 0.3307 S22: 0.1685 S23: 0.3253 REMARK 3 S31: -0.2260 S32: -0.3594 S33: -0.0475 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS 2. CHAIN A 4-17 HAS VERY POOR DENSITY, REMARK 3 OCCUPANCY SET TO 0.5 3. THERE ARE UNEXPLAINED DENSITIES NEAR REMARK 3 PUTATIVE ACTIVE SITES (AROUND 59-62 DISULFIDE BOND), SOME REMARK 3 RESEMBLE MPD. HOWEVER, NOT ALL OF THEM LOOKED SIMILAR. AS A REMARK 3 RESULT, ONLY ONE WAS MODELLED AS MPD, THE REST OF THEM ARE REMARK 3 MODELLED AS UNL, "UNKNOWN LIGAND" 4. UNL 2-7 O1 ATOM IS HEAVIER REMARK 3 THAN OXYGEN, IT FITS THE DENSITY BETTER TO MODEL EACH AS A REMARK 3 SULFATE AND A CLOSE ASSOCIATED WATER REMARK 4 REMARK 4 1VKE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1000001948. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 106734 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 32.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.78 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48000 REMARK 200 FOR SHELL : 1.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1P8C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.5 MES 25 MPD 0.2 LI2SO4, VAPOR REMARK 280 DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.98750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -160.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 TYR A 3 REMARK 465 LEU A 18 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 TYR B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 5 REMARK 465 PHE B 6 REMARK 465 VAL B 7 REMARK 465 GLU B 8 REMARK 465 ALA B 9 REMARK 465 ARG B 10 REMARK 465 ARG B 11 REMARK 465 GLU B 12 REMARK 465 LEU B 13 REMARK 465 ASN B 14 REMARK 465 GLU B 15 REMARK 465 LYS B 16 REMARK 465 VAL B 17 REMARK 465 LEU B 18 REMARK 465 SER B 19 REMARK 465 ARG B 20 REMARK 465 MET C -11 REMARK 465 GLY C -10 REMARK 465 SER C -9 REMARK 465 ASP C -8 REMARK 465 LYS C -7 REMARK 465 ILE C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 TYR C 3 REMARK 465 LYS C 4 REMARK 465 LYS C 5 REMARK 465 PHE C 6 REMARK 465 VAL C 7 REMARK 465 GLU C 8 REMARK 465 ALA C 9 REMARK 465 ARG C 10 REMARK 465 ARG C 11 REMARK 465 GLU C 12 REMARK 465 LEU C 13 REMARK 465 ASN C 14 REMARK 465 GLU C 15 REMARK 465 LYS C 16 REMARK 465 VAL C 17 REMARK 465 LEU C 18 REMARK 465 SER C 19 REMARK 465 ARG C 20 REMARK 465 LEU C 121 REMARK 465 MET D -11 REMARK 465 GLY D -10 REMARK 465 SER D -9 REMARK 465 ASP D -8 REMARK 465 LYS D -7 REMARK 465 ILE D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 TYR D 3 REMARK 465 LYS D 4 REMARK 465 LYS D 5 REMARK 465 PHE D 6 REMARK 465 VAL D 7 REMARK 465 GLU D 8 REMARK 465 ALA D 9 REMARK 465 ARG D 10 REMARK 465 ARG D 11 REMARK 465 GLU D 12 REMARK 465 LEU D 13 REMARK 465 ASN D 14 REMARK 465 GLU D 15 REMARK 465 LYS D 16 REMARK 465 VAL D 17 REMARK 465 LEU D 18 REMARK 465 SER D 120 REMARK 465 LEU D 121 REMARK 465 MET E -11 REMARK 465 GLY E -10 REMARK 465 SER E -9 REMARK 465 ASP E -8 REMARK 465 LYS E -7 REMARK 465 ILE E -6 REMARK 465 HIS E -5 REMARK 465 HIS E -4 REMARK 465 HIS E -3 REMARK 465 HIS E -2 REMARK 465 HIS E -1 REMARK 465 HIS E 0 REMARK 465 MET E 1 REMARK 465 LEU E 18 REMARK 465 MET F -11 REMARK 465 GLY F -10 REMARK 465 SER F -9 REMARK 465 ASP F -8 REMARK 465 LYS F -7 REMARK 465 ILE F -6 REMARK 465 HIS F -5 REMARK 465 HIS F -4 REMARK 465 HIS F -3 REMARK 465 HIS F -2 REMARK 465 HIS F -1 REMARK 465 HIS F 0 REMARK 465 MET F 1 REMARK 465 GLU F 2 REMARK 465 TYR F 3 REMARK 465 LYS F 4 REMARK 465 LYS F 5 REMARK 465 PHE F 6 REMARK 465 VAL F 7 REMARK 465 GLU F 8 REMARK 465 ALA F 9 REMARK 465 ARG F 10 REMARK 465 ARG F 11 REMARK 465 GLU F 12 REMARK 465 LEU F 13 REMARK 465 ASN F 14 REMARK 465 GLU F 15 REMARK 465 LYS F 16 REMARK 465 VAL F 17 REMARK 465 LEU F 18 REMARK 465 SER F 19 REMARK 465 GLU F 117 REMARK 465 THR F 118 REMARK 465 ILE F 119 REMARK 465 SER F 120 REMARK 465 LEU F 121 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 VAL A 7 CG1 CG2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 GLU A 15 CB CG CD OE1 OE2 REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 VAL A 17 CG1 CG2 REMARK 470 SER A 19 OG REMARK 470 ARG A 20 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 27 NE CZ NH1 NH2 REMARK 470 ARG A 100 CD NE CZ NH1 NH2 REMARK 470 LYS A 114 CE NZ REMARK 470 LEU A 121 CD1 CD2 REMARK 470 ARG B 27 NE CZ NH1 NH2 REMARK 470 ARG B 100 CD NE CZ NH1 NH2 REMARK 470 SER D 19 OG REMARK 470 LYS D 26 CE NZ REMARK 470 ARG D 100 NE CZ NH1 NH2 REMARK 470 GLU E 2 CG CD OE1 OE2 REMARK 470 LYS E 4 CG CD CE NZ REMARK 470 LYS E 5 CG CD CE NZ REMARK 470 GLU E 8 CG CD OE1 OE2 REMARK 470 ARG E 11 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 12 CG CD OE1 OE2 REMARK 470 LEU E 13 CG CD1 CD2 REMARK 470 GLU E 15 CB CG CD OE1 OE2 REMARK 470 SER E 19 OG REMARK 470 ARG E 20 CG CD NE CZ NH1 NH2 REMARK 470 ARG E 27 CD NE CZ NH1 NH2 REMARK 470 LEU F 23 CG CD1 CD2 REMARK 470 LYS F 26 CD CE NZ REMARK 470 ARG F 100 CD NE CZ NH1 NH2 REMARK 470 LYS F 114 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP E 32 O1 UNL E 123 2.15 REMARK 500 O4 UNL F 122 O HOH F 173 2.17 REMARK 500 O4 UNL A 122 O HOH A 143 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL F 95 CB VAL F 95 CG2 -0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 58 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG C 58 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG C 58 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG D 58 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG D 58 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG E 58 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG E 58 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG F 58 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG F 58 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL E 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL C 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL D 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL F 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL C 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL E 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL C 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL F 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD D 123 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 283477 RELATED DB: TARGETDB REMARK 900 RELATED ID: 356063 RELATED DB: TARGETDB REMARK 900 RELATED ID: 356064 RELATED DB: TARGETDB REMARK 900 RELATED ID: 356065 RELATED DB: TARGETDB REMARK 900 RELATED ID: 356075 RELATED DB: TARGETDB DBREF 1VKE A 1 121 UNP Q9X1V5 Q9X1V5_THEMA 1 121 DBREF 1VKE B 1 121 UNP Q9X1V5 Q9X1V5_THEMA 1 121 DBREF 1VKE C 1 121 UNP Q9X1V5 Q9X1V5_THEMA 1 121 DBREF 1VKE D 1 121 UNP Q9X1V5 Q9X1V5_THEMA 1 121 DBREF 1VKE E 1 121 UNP Q9X1V5 Q9X1V5_THEMA 1 121 DBREF 1VKE F 1 121 UNP Q9X1V5 Q9X1V5_THEMA 1 121 SEQADV 1VKE MET A -11 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE GLY A -10 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE SER A -9 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE ASP A -8 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE LYS A -7 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE ILE A -6 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS A -5 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS A -4 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS A -3 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS A -2 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS A -1 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS A 0 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE MET B -11 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE GLY B -10 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE SER B -9 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE ASP B -8 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE LYS B -7 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE ILE B -6 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS B -5 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS B -4 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS B -3 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS B -2 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS B -1 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS B 0 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE MET C -11 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE GLY C -10 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE SER C -9 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE ASP C -8 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE LYS C -7 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE ILE C -6 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS C -5 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS C -4 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS C -3 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS C -2 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS C -1 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS C 0 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE MET D -11 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE GLY D -10 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE SER D -9 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE ASP D -8 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE LYS D -7 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE ILE D -6 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS D -5 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS D -4 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS D -3 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS D -2 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS D -1 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS D 0 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE MET E -11 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE GLY E -10 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE SER E -9 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE ASP E -8 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE LYS E -7 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE ILE E -6 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS E -5 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS E -4 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS E -3 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS E -2 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS E -1 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS E 0 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE MET F -11 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE GLY F -10 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE SER F -9 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE ASP F -8 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE LYS F -7 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE ILE F -6 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS F -5 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS F -4 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS F -3 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS F -2 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS F -1 UNP Q9X1V5 EXPRESSION TAG SEQADV 1VKE HIS F 0 UNP Q9X1V5 EXPRESSION TAG SEQRES 1 A 133 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 133 GLU TYR LYS LYS PHE VAL GLU ALA ARG ARG GLU LEU ASN SEQRES 3 A 133 GLU LYS VAL LEU SER ARG GLY THR LEU ASN THR LYS ARG SEQRES 4 A 133 PHE PHE ASN LEU ASP SER ALA VAL TYR ARG PRO GLY LYS SEQRES 5 A 133 LEU ASP VAL LYS THR LYS GLU LEU MET GLY LEU VAL ALA SEQRES 6 A 133 SER THR VAL LEU ARG CYS ASP ASP CYS ILE ARG TYR HIS SEQRES 7 A 133 LEU VAL ARG CYS VAL GLN GLU GLY ALA SER ASP GLU GLU SEQRES 8 A 133 ILE PHE GLU ALA LEU ASP ILE ALA LEU VAL VAL GLY GLY SEQRES 9 A 133 SER ILE VAL ILE PRO HIS LEU ARG ARG ALA VAL GLY PHE SEQRES 10 A 133 LEU GLU GLU LEU ARG GLU MET GLU LYS ASN GLY GLU THR SEQRES 11 A 133 ILE SER LEU SEQRES 1 B 133 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 133 GLU TYR LYS LYS PHE VAL GLU ALA ARG ARG GLU LEU ASN SEQRES 3 B 133 GLU LYS VAL LEU SER ARG GLY THR LEU ASN THR LYS ARG SEQRES 4 B 133 PHE PHE ASN LEU ASP SER ALA VAL TYR ARG PRO GLY LYS SEQRES 5 B 133 LEU ASP VAL LYS THR LYS GLU LEU MET GLY LEU VAL ALA SEQRES 6 B 133 SER THR VAL LEU ARG CYS ASP ASP CYS ILE ARG TYR HIS SEQRES 7 B 133 LEU VAL ARG CYS VAL GLN GLU GLY ALA SER ASP GLU GLU SEQRES 8 B 133 ILE PHE GLU ALA LEU ASP ILE ALA LEU VAL VAL GLY GLY SEQRES 9 B 133 SER ILE VAL ILE PRO HIS LEU ARG ARG ALA VAL GLY PHE SEQRES 10 B 133 LEU GLU GLU LEU ARG GLU MET GLU LYS ASN GLY GLU THR SEQRES 11 B 133 ILE SER LEU SEQRES 1 C 133 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 C 133 GLU TYR LYS LYS PHE VAL GLU ALA ARG ARG GLU LEU ASN SEQRES 3 C 133 GLU LYS VAL LEU SER ARG GLY THR LEU ASN THR LYS ARG SEQRES 4 C 133 PHE PHE ASN LEU ASP SER ALA VAL TYR ARG PRO GLY LYS SEQRES 5 C 133 LEU ASP VAL LYS THR LYS GLU LEU MET GLY LEU VAL ALA SEQRES 6 C 133 SER THR VAL LEU ARG CYS ASP ASP CYS ILE ARG TYR HIS SEQRES 7 C 133 LEU VAL ARG CYS VAL GLN GLU GLY ALA SER ASP GLU GLU SEQRES 8 C 133 ILE PHE GLU ALA LEU ASP ILE ALA LEU VAL VAL GLY GLY SEQRES 9 C 133 SER ILE VAL ILE PRO HIS LEU ARG ARG ALA VAL GLY PHE SEQRES 10 C 133 LEU GLU GLU LEU ARG GLU MET GLU LYS ASN GLY GLU THR SEQRES 11 C 133 ILE SER LEU SEQRES 1 D 133 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 D 133 GLU TYR LYS LYS PHE VAL GLU ALA ARG ARG GLU LEU ASN SEQRES 3 D 133 GLU LYS VAL LEU SER ARG GLY THR LEU ASN THR LYS ARG SEQRES 4 D 133 PHE PHE ASN LEU ASP SER ALA VAL TYR ARG PRO GLY LYS SEQRES 5 D 133 LEU ASP VAL LYS THR LYS GLU LEU MET GLY LEU VAL ALA SEQRES 6 D 133 SER THR VAL LEU ARG CYS ASP ASP CYS ILE ARG TYR HIS SEQRES 7 D 133 LEU VAL ARG CYS VAL GLN GLU GLY ALA SER ASP GLU GLU SEQRES 8 D 133 ILE PHE GLU ALA LEU ASP ILE ALA LEU VAL VAL GLY GLY SEQRES 9 D 133 SER ILE VAL ILE PRO HIS LEU ARG ARG ALA VAL GLY PHE SEQRES 10 D 133 LEU GLU GLU LEU ARG GLU MET GLU LYS ASN GLY GLU THR SEQRES 11 D 133 ILE SER LEU SEQRES 1 E 133 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 E 133 GLU TYR LYS LYS PHE VAL GLU ALA ARG ARG GLU LEU ASN SEQRES 3 E 133 GLU LYS VAL LEU SER ARG GLY THR LEU ASN THR LYS ARG SEQRES 4 E 133 PHE PHE ASN LEU ASP SER ALA VAL TYR ARG PRO GLY LYS SEQRES 5 E 133 LEU ASP VAL LYS THR LYS GLU LEU MET GLY LEU VAL ALA SEQRES 6 E 133 SER THR VAL LEU ARG CYS ASP ASP CYS ILE ARG TYR HIS SEQRES 7 E 133 LEU VAL ARG CYS VAL GLN GLU GLY ALA SER ASP GLU GLU SEQRES 8 E 133 ILE PHE GLU ALA LEU ASP ILE ALA LEU VAL VAL GLY GLY SEQRES 9 E 133 SER ILE VAL ILE PRO HIS LEU ARG ARG ALA VAL GLY PHE SEQRES 10 E 133 LEU GLU GLU LEU ARG GLU MET GLU LYS ASN GLY GLU THR SEQRES 11 E 133 ILE SER LEU SEQRES 1 F 133 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 F 133 GLU TYR LYS LYS PHE VAL GLU ALA ARG ARG GLU LEU ASN SEQRES 3 F 133 GLU LYS VAL LEU SER ARG GLY THR LEU ASN THR LYS ARG SEQRES 4 F 133 PHE PHE ASN LEU ASP SER ALA VAL TYR ARG PRO GLY LYS SEQRES 5 F 133 LEU ASP VAL LYS THR LYS GLU LEU MET GLY LEU VAL ALA SEQRES 6 F 133 SER THR VAL LEU ARG CYS ASP ASP CYS ILE ARG TYR HIS SEQRES 7 F 133 LEU VAL ARG CYS VAL GLN GLU GLY ALA SER ASP GLU GLU SEQRES 8 F 133 ILE PHE GLU ALA LEU ASP ILE ALA LEU VAL VAL GLY GLY SEQRES 9 F 133 SER ILE VAL ILE PRO HIS LEU ARG ARG ALA VAL GLY PHE SEQRES 10 F 133 LEU GLU GLU LEU ARG GLU MET GLU LYS ASN GLY GLU THR SEQRES 11 F 133 ILE SER LEU HET UNL A 122 6 HET UNL A 123 3 HET UNL B 122 6 HET UNL B 123 2 HET UNL C 122 6 HET UNL C 123 6 HET UNL C 124 3 HET UNL D 122 6 HET MPD D 123 8 HET UNL E 122 6 HET UNL E 123 6 HET UNL F 122 6 HET UNL F 123 4 HETNAM UNL UNKNOWN LIGAND HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 15 MPD C6 H14 O2 FORMUL 20 HOH *435(H2 O) HELIX 1 1 LYS A 4 VAL A 17 1 14 HELIX 2 2 THR A 22 VAL A 35 1 14 HELIX 3 3 ASP A 42 LEU A 57 1 16 HELIX 4 4 CYS A 59 GLU A 73 1 15 HELIX 5 5 SER A 76 GLY A 92 1 17 HELIX 6 6 VAL A 95 ASN A 115 1 21 HELIX 7 7 THR B 22 VAL B 35 1 14 HELIX 8 8 ASP B 42 LEU B 57 1 16 HELIX 9 9 CYS B 59 GLU B 73 1 15 HELIX 10 10 SER B 76 GLY B 92 1 17 HELIX 11 11 VAL B 95 ASN B 115 1 21 HELIX 12 12 THR C 22 VAL C 35 1 14 HELIX 13 13 ASP C 42 LEU C 57 1 16 HELIX 14 14 CYS C 59 GLU C 73 1 15 HELIX 15 15 SER C 76 GLY C 92 1 17 HELIX 16 16 VAL C 95 ASN C 115 1 21 HELIX 17 17 THR D 22 VAL D 35 1 14 HELIX 18 18 ASP D 42 LEU D 57 1 16 HELIX 19 19 CYS D 59 GLU D 73 1 15 HELIX 20 20 SER D 76 GLY D 92 1 17 HELIX 21 21 VAL D 95 ASN D 115 1 21 HELIX 22 22 GLU E 2 VAL E 17 1 16 HELIX 23 23 SER E 19 GLY E 21 5 3 HELIX 24 24 THR E 22 VAL E 35 1 14 HELIX 25 25 ASP E 42 LEU E 57 1 16 HELIX 26 26 CYS E 59 GLU E 73 1 15 HELIX 27 27 SER E 76 GLY E 92 1 17 HELIX 28 28 VAL E 95 GLY E 116 1 22 HELIX 29 29 THR F 22 VAL F 35 1 14 HELIX 30 30 ASP F 42 LEU F 57 1 16 HELIX 31 31 CYS F 59 GLU F 73 1 15 HELIX 32 32 SER F 76 GLY F 92 1 17 HELIX 33 33 VAL F 95 GLY F 116 1 22 SSBOND 1 CYS A 59 CYS A 62 1555 1555 2.16 SSBOND 2 CYS B 59 CYS B 62 1555 1555 2.19 SSBOND 3 CYS C 59 CYS C 62 1555 1555 2.17 SSBOND 4 CYS D 59 CYS D 62 1555 1555 2.14 SSBOND 5 CYS E 59 CYS E 62 1555 1555 2.18 SSBOND 6 CYS F 59 CYS F 62 1555 1555 2.15 SITE 1 AC1 10 ARG A 58 CYS A 59 ASP A 60 ASP A 61 SITE 2 AC1 10 HIS A 98 HOH A 143 HOH A 154 HOH A 197 SITE 3 AC1 10 HIS E 98 ARG E 101 SITE 1 AC2 11 HOH A 197 HIS B 98 ARG B 101 ARG E 58 SITE 2 AC2 11 CYS E 59 ASP E 60 ASP E 61 HIS E 98 SITE 3 AC2 11 HOH E 145 HOH E 148 HOH E 194 SITE 1 AC3 9 HIS A 98 ARG A 101 ARG B 58 CYS B 59 SITE 2 AC3 9 ASP B 60 ASP B 61 HIS B 98 HOH B 135 SITE 3 AC3 9 HOH B 171 SITE 1 AC4 10 ARG C 58 CYS C 59 ASP C 60 ASP C 61 SITE 2 AC4 10 HIS C 98 HOH C 156 HOH C 179 HOH D 185 SITE 3 AC4 10 HIS F 98 ARG F 101 SITE 1 AC5 10 HIS C 98 ARG C 101 ARG D 58 CYS D 59 SITE 2 AC5 10 ASP D 60 ASP D 61 HIS D 98 HOH D 145 SITE 3 AC5 10 HOH D 146 HOH D 185 SITE 1 AC6 9 HIS D 98 ARG D 101 ARG F 58 CYS F 59 SITE 2 AC6 9 ASP F 60 ASP F 61 HIS F 98 HOH F 130 SITE 3 AC6 9 HOH F 173 SITE 1 AC7 5 LEU C 57 ARG C 58 HOH C 185 LEU D 57 SITE 2 AC7 5 ARG D 58 SITE 1 AC8 7 SER B 93 ASP E 32 TYR E 36 SER E 54 SITE 2 AC8 7 CYS E 62 HIS E 66 VAL F 90 SITE 1 AC9 6 SER A 93 ASP B 32 TYR B 36 HIS B 66 SITE 2 AC9 6 HOH B 198 VAL C 90 SITE 1 BC1 5 ASP A 32 TYR A 36 CYS A 62 HIS A 66 SITE 2 BC1 5 SER E 93 SITE 1 BC2 3 TYR C 36 SER C 54 HIS C 66 SITE 1 BC3 5 SER D 93 ASP F 32 TYR F 36 SER F 54 SITE 2 BC3 5 HIS F 66 SITE 1 BC4 7 VAL A 90 SER C 93 ASP D 32 TYR D 36 SITE 2 BC4 7 SER D 54 CYS D 62 HIS D 66 CRYST1 67.922 67.975 90.077 90.00 97.52 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014723 0.000000 0.001944 0.00000 SCALE2 0.000000 0.014711 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011198 0.00000