HEADER BIOSYNTHETIC PROTEIN 27-JUL-04 1VLI TITLE CRYSTAL STRUCTURE OF SPORE COAT POLYSACCHARIDE BIOSYNTHESIS PROTEIN TITLE 2 SPSE (BSU37870) FROM BACILLUS SUBTILIS AT 2.38 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPORE COAT POLYSACCHARIDE BIOSYNTHESIS PROTEIN SPSE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: SPSE, IPA-67D; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS 2636322, SPORE COAT POLYSACCHARIDE BIOSYNTHESIS PROTEIN SPSE, KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, BSU37870, KEYWDS 3 SPSE, PSI, JOINT CENTER FOR STRUCTURAL GENOMICS, BIOSYNTHETIC KEYWDS 4 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 1VLI 1 REMARK SEQADV LINK REVDAT 6 04-OCT-17 1VLI 1 REMARK REVDAT 5 13-JUL-11 1VLI 1 VERSN REVDAT 4 24-FEB-09 1VLI 1 VERSN REVDAT 3 28-MAR-06 1VLI 1 JRNL REVDAT 2 18-JAN-05 1VLI 1 AUTHOR KEYWDS REMARK REVDAT 1 21-SEP-04 1VLI 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF SPORE COAT POLYSACCHARIDE BIOSYNTHESIS JRNL TITL 2 PROTEIN SPSE (BSU37870) FROM BACILLUS SUBTILIS AT 2.38 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1256 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1713 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2739 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 61.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.57000 REMARK 3 B22 (A**2) : -3.57000 REMARK 3 B33 (A**2) : 5.35000 REMARK 3 B12 (A**2) : -1.78000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.223 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.689 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2800 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3803 ; 1.508 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 6.475 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;40.701 ;24.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 458 ;16.513 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;15.146 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 430 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2127 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1181 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1924 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 102 ; 0.129 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.119 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.172 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1838 ; 2.225 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2880 ; 3.719 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1076 ; 6.435 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 923 ; 8.737 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 368 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3153 27.0739 82.8304 REMARK 3 T TENSOR REMARK 3 T11: 0.0537 T22: -0.1670 REMARK 3 T33: -0.1977 T12: 0.2215 REMARK 3 T13: -0.1619 T23: -0.0494 REMARK 3 L TENSOR REMARK 3 L11: 1.8562 L22: 1.4335 REMARK 3 L33: 2.4594 L12: -0.2725 REMARK 3 L13: 1.3546 L23: 0.2768 REMARK 3 S TENSOR REMARK 3 S11: -0.1490 S12: -0.1278 S13: 0.1114 REMARK 3 S21: -0.1229 S22: -0.0609 S23: -0.0819 REMARK 3 S31: -0.3229 S32: 0.0251 S33: 0.2099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A LOW OCCUPIED ZINC WAS TENATIVELY REMARK 3 MODELLED TO COORDINATE HIS214 AND HIS236 2. THE DENSITY BETWEEN REMARK 3 64-74 APPEARS TO BE CONTINUOUS, HOWEVER, IT IS IMPOSSIBLE TO REMARK 3 BUILD ALL THE MISSING RESIDUES INTO IT. AS A RESULT, ATOMIC REMARK 3 COORDINATES WERE NOT MODELED INTO THIS DENSITY. 3. DIFFICULT TO REMARK 3 BUILD LOOPS: 216-220, 244-248. 4. LOOP WITH POOR DENSITY: 293- REMARK 3 297. 5. OLIGOMERIC STATE WAS TENATIVELY ASSIGNED AS MONOMER. REMARK 4 REMARK 4 1VLI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000001984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-04; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL9-1; BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.879288; 0.879288, 0.978780, REMARK 200 0.979359 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR; NULL REMARK 200 OPTICS : ADSC FLAT MIRROR; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24673 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 29.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.70000 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP, AUTOSHARP, SOLOMON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG MME 2000, 0.04M TRIS_BASE, REMARK 280 0.06M TRIS CL , VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 136.90600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.45300 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 68.45300 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 136.90600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 136.90600 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 205.35900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 375 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 GLY A 65 REMARK 465 LEU A 66 REMARK 465 TYR A 67 REMARK 465 LYS A 68 REMARK 465 THR A 69 REMARK 465 ALA A 70 REMARK 465 ALA A 71 REMARK 465 GLY A 72 REMARK 465 LYS A 73 REMARK 465 SER A 369 REMARK 465 PRO A 370 REMARK 465 PHE A 371 REMARK 465 HIS A 372 REMARK 465 GLU A 373 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 CD CE NZ REMARK 470 GLN A 61 CD OE1 NE2 REMARK 470 LYS A 62 CE NZ REMARK 470 ASP A 74 CG OD1 OD2 REMARK 470 ILE A 77 CD1 REMARK 470 ARG A 99 NE CZ NH1 NH2 REMARK 470 ASN A 174 OD1 ND2 REMARK 470 LYS A 258 CD CE NZ REMARK 470 LYS A 272 CD CE NZ REMARK 470 THR A 276 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 270 CB GLU A 270 CG 0.125 REMARK 500 GLU A 270 CD GLU A 270 OE1 0.260 REMARK 500 GLU A 270 CD GLU A 270 OE2 0.168 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 270 OE1 - CD - OE2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 363 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 7 -118.71 57.68 REMARK 500 ASP A 14 -10.47 74.62 REMARK 500 ASN A 26 8.68 -66.96 REMARK 500 GLN A 175 75.40 -100.55 REMARK 500 CYS A 181 146.61 -171.14 REMARK 500 ASN A 193 56.48 38.58 REMARK 500 ASP A 240 115.17 -164.43 REMARK 500 PRO A 244 105.18 -56.81 REMARK 500 ALA A 246 -83.28 -58.12 REMARK 500 LYS A 277 98.04 47.82 REMARK 500 GLU A 320 -25.23 -37.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 374 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 HIS A 236 NE2 102.1 REMARK 620 3 HOH A 417 O 139.7 114.5 REMARK 620 4 HOH A 455 O 72.8 88.1 122.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 374 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 355716 RELATED DB: TARGETDB DBREF 1VLI A 1 373 UNP P39625 SPSE_BACSU 1 373 SEQADV 1VLI MSE A -11 UNP P39625 EXPRESSION TAG SEQADV 1VLI GLY A -10 UNP P39625 EXPRESSION TAG SEQADV 1VLI SER A -9 UNP P39625 EXPRESSION TAG SEQADV 1VLI ASP A -8 UNP P39625 EXPRESSION TAG SEQADV 1VLI LYS A -7 UNP P39625 EXPRESSION TAG SEQADV 1VLI ILE A -6 UNP P39625 EXPRESSION TAG SEQADV 1VLI HIS A -5 UNP P39625 EXPRESSION TAG SEQADV 1VLI HIS A -4 UNP P39625 EXPRESSION TAG SEQADV 1VLI HIS A -3 UNP P39625 EXPRESSION TAG SEQADV 1VLI HIS A -2 UNP P39625 EXPRESSION TAG SEQADV 1VLI HIS A -1 UNP P39625 EXPRESSION TAG SEQADV 1VLI HIS A 0 UNP P39625 EXPRESSION TAG SEQADV 1VLI MSE A 1 UNP P39625 MET 1 MODIFIED RESIDUE SEQADV 1VLI MSE A 53 UNP P39625 MET 53 MODIFIED RESIDUE SEQADV 1VLI MSE A 59 UNP P39625 MET 59 MODIFIED RESIDUE SEQADV 1VLI MSE A 84 UNP P39625 MET 84 MODIFIED RESIDUE SEQADV 1VLI MSE A 86 UNP P39625 MET 86 MODIFIED RESIDUE SEQADV 1VLI MSE A 149 UNP P39625 MET 149 MODIFIED RESIDUE SEQADV 1VLI MSE A 179 UNP P39625 MET 179 MODIFIED RESIDUE SEQADV 1VLI MSE A 199 UNP P39625 MET 199 MODIFIED RESIDUE SEQADV 1VLI MSE A 260 UNP P39625 MET 260 MODIFIED RESIDUE SEQRES 1 A 385 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 385 ALA ALA PHE GLN ILE ALA ASN LYS THR VAL GLY LYS ASP SEQRES 3 A 385 ALA PRO VAL PHE ILE ILE ALA GLU ALA GLY ILE ASN HIS SEQRES 4 A 385 ASP GLY LYS LEU ASP GLN ALA PHE ALA LEU ILE ASP ALA SEQRES 5 A 385 ALA ALA GLU ALA GLY ALA ASP ALA VAL LYS PHE GLN MSE SEQRES 6 A 385 PHE GLN ALA ASP ARG MSE TYR GLN LYS ASP PRO GLY LEU SEQRES 7 A 385 TYR LYS THR ALA ALA GLY LYS ASP VAL SER ILE PHE SER SEQRES 8 A 385 LEU VAL GLN SER MSE GLU MSE PRO ALA GLU TRP ILE LEU SEQRES 9 A 385 PRO LEU LEU ASP TYR CYS ARG GLU LYS GLN VAL ILE PHE SEQRES 10 A 385 LEU SER THR VAL CYS ASP GLU GLY SER ALA ASP LEU LEU SEQRES 11 A 385 GLN SER THR SER PRO SER ALA PHE LYS ILE ALA SER TYR SEQRES 12 A 385 GLU ILE ASN HIS LEU PRO LEU LEU LYS TYR VAL ALA ARG SEQRES 13 A 385 LEU ASN ARG PRO MSE ILE PHE SER THR ALA GLY ALA GLU SEQRES 14 A 385 ILE SER ASP VAL HIS GLU ALA TRP ARG THR ILE ARG ALA SEQRES 15 A 385 GLU GLY ASN ASN GLN ILE ALA ILE MSE HIS CYS VAL ALA SEQRES 16 A 385 LYS TYR PRO ALA PRO PRO GLU TYR SER ASN LEU SER VAL SEQRES 17 A 385 ILE PRO MSE LEU ALA ALA ALA PHE PRO GLU ALA VAL ILE SEQRES 18 A 385 GLY PHE SER ASP HIS SER GLU HIS PRO THR GLU ALA PRO SEQRES 19 A 385 CYS ALA ALA VAL ARG LEU GLY ALA LYS LEU ILE GLU LYS SEQRES 20 A 385 HIS PHE THR ILE ASP LYS ASN LEU PRO GLY ALA ASP HIS SEQRES 21 A 385 SER PHE ALA LEU ASN PRO ASP GLU LEU LYS GLU MSE VAL SEQRES 22 A 385 ASP GLY ILE ARG LYS THR GLU ALA GLU LEU LYS GLN GLY SEQRES 23 A 385 ILE THR LYS PRO VAL SER GLU LYS LEU LEU GLY SER SER SEQRES 24 A 385 TYR LYS THR THR THR ALA ILE GLU GLY GLU ILE ARG ASN SEQRES 25 A 385 PHE ALA TYR ARG GLY ILE PHE THR THR ALA PRO ILE GLN SEQRES 26 A 385 LYS GLY GLU ALA PHE SER GLU ASP ASN ILE ALA VAL LEU SEQRES 27 A 385 ARG PRO GLY GLN LYS PRO GLN GLY LEU HIS PRO ARG PHE SEQRES 28 A 385 PHE GLU LEU LEU THR SER GLY VAL ARG ALA VAL ARG ASP SEQRES 29 A 385 ILE PRO ALA ASP THR GLY ILE VAL TRP ASP ASP ILE LEU SEQRES 30 A 385 LEU LYS ASP SER PRO PHE HIS GLU MODRES 1VLI MSE A 53 MET SELENOMETHIONINE MODRES 1VLI MSE A 59 MET SELENOMETHIONINE MODRES 1VLI MSE A 84 MET SELENOMETHIONINE MODRES 1VLI MSE A 86 MET SELENOMETHIONINE MODRES 1VLI MSE A 149 MET SELENOMETHIONINE MODRES 1VLI MSE A 179 MET SELENOMETHIONINE MODRES 1VLI MSE A 199 MET SELENOMETHIONINE MODRES 1VLI MSE A 260 MET SELENOMETHIONINE HET MSE A 53 8 HET MSE A 59 8 HET MSE A 84 8 HET MSE A 86 8 HET MSE A 149 8 HET MSE A 179 8 HET MSE A 199 8 HET MSE A 260 8 HET ZN A 374 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *83(H2 O) HELIX 1 1 LYS A 30 GLY A 45 1 16 HELIX 2 2 GLN A 55 TYR A 60 5 6 HELIX 3 3 SER A 76 VAL A 81 1 6 HELIX 4 4 GLN A 82 MSE A 84 5 3 HELIX 5 5 PRO A 87 GLU A 89 5 3 HELIX 6 6 TRP A 90 LYS A 101 1 12 HELIX 7 7 ASP A 111 SER A 120 1 10 HELIX 8 8 ALA A 129 ILE A 133 5 5 HELIX 9 9 HIS A 135 ARG A 144 1 10 HELIX 10 10 GLU A 157 ALA A 170 1 14 HELIX 11 11 PRO A 188 SER A 192 5 5 HELIX 12 12 ASN A 193 LEU A 194 5 2 HELIX 13 13 SER A 195 PHE A 204 1 10 HELIX 14 14 THR A 219 LEU A 228 1 10 HELIX 15 15 ASN A 253 GLY A 274 1 22 HELIX 16 16 SER A 280 GLY A 285 1 6 HELIX 17 17 GLU A 297 ALA A 302 1 6 HELIX 18 18 HIS A 336 ARG A 338 5 3 HELIX 19 19 PHE A 339 SER A 345 1 7 HELIX 20 20 VAL A 360 ILE A 364 5 5 SHEET 1 A 2 ALA A 3 ILE A 6 0 SHEET 2 A 2 LYS A 9 GLY A 12 -1 O LYS A 9 N ILE A 6 SHEET 1 B 8 ILE A 104 LEU A 106 0 SHEET 2 B 8 ALA A 48 PHE A 51 1 N VAL A 49 O ILE A 104 SHEET 3 B 8 PHE A 18 GLY A 24 1 N ALA A 21 O LYS A 50 SHEET 4 B 8 LEU A 232 HIS A 236 1 O LYS A 235 N GLU A 22 SHEET 5 B 8 VAL A 208 ASP A 213 1 N ASP A 213 O GLU A 234 SHEET 6 B 8 ILE A 176 CYS A 181 1 N HIS A 180 O SER A 212 SHEET 7 B 8 MSE A 149 SER A 152 1 N PHE A 151 O MSE A 179 SHEET 8 B 8 PHE A 126 ILE A 128 1 N PHE A 126 O ILE A 150 SHEET 1 C 2 GLY A 305 THR A 308 0 SHEET 2 C 2 ILE A 323 LEU A 326 -1 O ALA A 324 N PHE A 307 LINK C GLN A 52 N MSE A 53 1555 1555 1.33 LINK C MSE A 53 N PHE A 54 1555 1555 1.33 LINK C ARG A 58 N MSE A 59 1555 1555 1.33 LINK C MSE A 59 N TYR A 60 1555 1555 1.34 LINK C SER A 83 N MSE A 84 1555 1555 1.32 LINK C MSE A 84 N GLU A 85 1555 1555 1.33 LINK C GLU A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N PRO A 87 1555 1555 1.34 LINK C PRO A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N ILE A 150 1555 1555 1.33 LINK C ILE A 178 N MSE A 179 1555 1555 1.34 LINK C MSE A 179 N HIS A 180 1555 1555 1.32 LINK C PRO A 198 N MSE A 199 1555 1555 1.33 LINK C MSE A 199 N LEU A 200 1555 1555 1.34 LINK C GLU A 259 N MSE A 260 1555 1555 1.34 LINK C MSE A 260 N VAL A 261 1555 1555 1.33 LINK NE2 HIS A 214 ZN ZN A 374 1555 1555 2.40 LINK NE2 HIS A 236 ZN ZN A 374 1555 1555 2.26 LINK ZN ZN A 374 O HOH A 417 1555 1555 2.39 LINK ZN ZN A 374 O HOH A 455 1555 1555 2.48 CISPEP 1 TYR A 185 PRO A 186 0 -3.95 SITE 1 AC1 4 HIS A 214 HIS A 236 HOH A 417 HOH A 455 CRYST1 70.578 70.578 205.359 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014169 0.008180 0.000000 0.00000 SCALE2 0.000000 0.016361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004870 0.00000