HEADER OXIDOREDUCTASE 03-AUG-04 1VLL TITLE CRYSTAL STRUCTURE OF ALANINE DEHYDROGENASE (AF1665) FROM ARCHAEOGLOBUS TITLE 2 FULGIDUS AT 2.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.4.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: DSM 4304; SOURCE 5 GENE: AF1665, ARCB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS 2648890, AF1665, ALANINE DEHYDROGENASE, STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 22-MAY-24 1VLL 1 REMARK REVDAT 7 25-JAN-23 1VLL 1 SEQADV REVDAT 6 13-JUL-11 1VLL 1 VERSN REVDAT 5 24-FEB-09 1VLL 1 VERSN REVDAT 4 28-MAR-06 1VLL 1 JRNL REVDAT 3 19-APR-05 1VLL 1 HEADER TITLE COMPND KEYWDS REVDAT 3 2 1 JRNL REVDAT 2 18-JAN-05 1VLL 1 AUTHOR KEYWDS REMARK REVDAT 1 21-SEP-04 1VLL 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF ALANINE DEHYDROGENASE (AF1665) FROM JRNL TITL 2 ARCHAEOGLOBUS FULGIDUS AT 2.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 897 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1200 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.3770 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4574 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 84.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.60000 REMARK 3 B22 (A**2) : -1.47000 REMARK 3 B33 (A**2) : 3.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.378 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.317 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.347 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4654 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6342 ; 1.312 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 640 ; 5.836 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;35.526 ;24.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 669 ;17.346 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.672 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 747 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3540 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2113 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3218 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 160 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 3 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.240 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3241 ; 1.184 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4991 ; 2.049 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1588 ; 4.204 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1351 ; 6.284 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 321 2 REMARK 3 1 B 1 B 321 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1284 ; 0.05 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 952 ; 0.38 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 1284 ; 0.15 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 952 ; 1.07 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 321 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7520 -14.7739 -18.4681 REMARK 3 T TENSOR REMARK 3 T11: 0.0035 T22: -0.0287 REMARK 3 T33: -0.0003 T12: 0.0560 REMARK 3 T13: -0.1130 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 3.0116 L22: 2.3470 REMARK 3 L33: 4.0827 L12: -0.6774 REMARK 3 L13: -1.1026 L23: 0.9418 REMARK 3 S TENSOR REMARK 3 S11: -0.1603 S12: -0.3431 S13: -0.2311 REMARK 3 S21: 0.5404 S22: 0.1076 S23: -0.0233 REMARK 3 S31: -0.0141 S32: -0.1667 S33: 0.0527 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 321 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2799 -19.1183 -47.0774 REMARK 3 T TENSOR REMARK 3 T11: 0.0963 T22: 0.0964 REMARK 3 T33: 0.1383 T12: -0.2754 REMARK 3 T13: 0.0159 T23: 0.1064 REMARK 3 L TENSOR REMARK 3 L11: 2.5881 L22: 3.4969 REMARK 3 L33: 2.9537 L12: -0.9114 REMARK 3 L13: -0.9621 L23: 0.9143 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: 0.2393 S13: 0.1700 REMARK 3 S21: -0.8599 S22: 0.2334 S23: -0.4600 REMARK 3 S31: -0.3189 S32: 0.2956 S33: -0.2720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE DATA USED IN THE FINAL REFINEMENT REMARK 3 WAS FROM A NATIVE CRYSTAL. THE REFINEMENT OF THE COORDINATES WAS REMARK 3 RESTRAINED WITH THE EXPERIMENTAL PHASES FROM A CRYSTAL OF THE REMARK 3 SELENOMETHIONINE-SUBSTITUTED PROTEIN THAT WAS USED FOR INITIAL REMARK 3 PHASE DETERMINATION BY MULTIPLE WAVELENGTH ANOMALOUS DISPERSION. REMARK 4 REMARK 4 1VLL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000001986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-04; 20-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS REMARK 200 BEAMLINE : 8.3.1; 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115880; 0.9794, 0.9796, 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111); DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC; ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17713 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 56.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.36200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA FROM A CRYSTAL CONTAINING SE-MET SUBSTITUTED WAS USED REMARK 200 FOR THE MAD PHASING EXPERIMENTS AND DATA FROM A CRYSTAL OF THE REMARK 200 NATIVE PROTEIN WAS USED FOR THE FINAL REFINEMENT. THE 3 ANGSTROM REMARK 200 MAD PHASES WERE EXTENDED TO 2.8 ANGSTROMS USING THE NATIVE REMARK 200 STRUCTURE FACTOR AMPLITUDES IN THE PROGRAM RESOLVE. AFTER THE REMARK 200 INITIAL TRACE PDB ENTRY 1OMO WAS USED TO FACILITATE COMPLETION REMARK 200 OF THE MODEL. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M ACETIC ACID, 0.052M CITRATE_NA3, REMARK 280 29% PEG MME 550 , VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 293K. 0.05M ACETIC ACID, 0.05M CITRATE_NA3, 30% PEG REMARK 280 MME 550 , VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.35100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.89150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.21850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.89150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.35100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.21850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ILE A 322 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 ILE B 322 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 9 CG CD OE1 OE2 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 ARG A 52 NE CZ NH1 NH2 REMARK 470 ASP A 75 CG OD1 OD2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 SER A 126 OG REMARK 470 ASP A 149 CG OD1 OD2 REMARK 470 ILE A 150 CG1 CG2 CD1 REMARK 470 ARG A 159 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 SER A 168 OG REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 ILE A 175 CG1 CG2 CD1 REMARK 470 SER A 176 OG REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 ARG A 187 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 199 CG CD CE NZ REMARK 470 VAL A 201 CG1 CG2 REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 GLU A 205 CG CD OE1 OE2 REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 VAL A 228 CG1 CG2 REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 LYS A 232 CG CD CE NZ REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 SER A 255 OG REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 ILE A 285 CG1 CG2 CD1 REMARK 470 LYS A 311 CE NZ REMARK 470 ASN A 312 CG OD1 ND2 REMARK 470 SER A 315 OG REMARK 470 LYS A 316 CE NZ REMARK 470 LYS A 318 CG CD CE NZ REMARK 470 ARG A 321 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 6 CD1 CD2 REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 ASP B 75 CG OD1 OD2 REMARK 470 SER B 89 OG REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 ASN B 124 CG OD1 ND2 REMARK 470 SER B 125 OG REMARK 470 SER B 126 OG REMARK 470 VAL B 127 CG1 CG2 REMARK 470 ASP B 149 CG OD1 OD2 REMARK 470 ILE B 150 CG1 CG2 CD1 REMARK 470 GLU B 152 CG CD OE1 OE2 REMARK 470 VAL B 153 CG1 CG2 REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 VAL B 158 CG1 CG2 REMARK 470 ARG B 159 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 160 CG CD OE1 OE2 REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 LYS B 165 CG CD CE NZ REMARK 470 SER B 168 OG REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 470 ILE B 175 CG1 CG2 CD1 REMARK 470 SER B 176 OG REMARK 470 SER B 178 OG REMARK 470 VAL B 179 CG1 CG2 REMARK 470 GLN B 180 CG CD OE1 NE2 REMARK 470 GLU B 183 CG CD OE1 OE2 REMARK 470 GLU B 184 CG CD OE1 OE2 REMARK 470 SER B 186 OG REMARK 470 ARG B 187 CG CD NE CZ NH1 NH2 REMARK 470 SER B 197 OG REMARK 470 LYS B 199 CG CD CE NZ REMARK 470 VAL B 201 CG1 CG2 REMARK 470 LYS B 203 CG CD CE NZ REMARK 470 GLU B 208 CG CD OE1 OE2 REMARK 470 GLU B 209 CG CD OE1 OE2 REMARK 470 ILE B 216 CG1 CG2 CD1 REMARK 470 LYS B 223 CE NZ REMARK 470 VAL B 228 CG1 CG2 REMARK 470 LYS B 232 CG CD CE NZ REMARK 470 VAL B 254 CG1 CG2 REMARK 470 LYS B 256 CG CD CE NZ REMARK 470 GLU B 262 CG CD OE1 OE2 REMARK 470 GLU B 280 CG CD OE1 OE2 REMARK 470 SER B 281 OG REMARK 470 ASP B 282 CG OD1 OD2 REMARK 470 GLU B 283 CG CD OE1 OE2 REMARK 470 ILE B 285 CG1 CG2 CD1 REMARK 470 LEU B 293 CD1 CD2 REMARK 470 LEU B 309 CD1 CD2 REMARK 470 LYS B 311 CG CD CE NZ REMARK 470 SER B 315 OG REMARK 470 LYS B 316 CD CE NZ REMARK 470 LYS B 318 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 169 CG TYR B 169 CD2 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 196 50.31 -97.57 REMARK 500 VAL A 228 -19.77 -47.11 REMARK 500 GLU A 280 -86.35 -106.84 REMARK 500 PRO B 95 85.83 -69.60 REMARK 500 CYS B 188 -171.99 -170.73 REMARK 500 PRO B 196 43.28 -101.76 REMARK 500 VAL B 228 -19.87 -46.21 REMARK 500 GLU B 262 -32.68 -38.84 REMARK 500 GLU B 280 -88.10 -102.22 REMARK 500 THR B 291 -37.04 -133.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 354281 RELATED DB: TARGETDB DBREF 1VLL A 1 322 UNP O28608 O28608_ARCFU 1 322 DBREF 1VLL B 1 322 UNP O28608 O28608_ARCFU 1 322 SEQADV 1VLL MET A -11 UNP O28608 EXPRESSION TAG SEQADV 1VLL GLY A -10 UNP O28608 EXPRESSION TAG SEQADV 1VLL SER A -9 UNP O28608 EXPRESSION TAG SEQADV 1VLL ASP A -8 UNP O28608 EXPRESSION TAG SEQADV 1VLL LYS A -7 UNP O28608 EXPRESSION TAG SEQADV 1VLL ILE A -6 UNP O28608 EXPRESSION TAG SEQADV 1VLL HIS A -5 UNP O28608 EXPRESSION TAG SEQADV 1VLL HIS A -4 UNP O28608 EXPRESSION TAG SEQADV 1VLL HIS A -3 UNP O28608 EXPRESSION TAG SEQADV 1VLL HIS A -2 UNP O28608 EXPRESSION TAG SEQADV 1VLL HIS A -1 UNP O28608 EXPRESSION TAG SEQADV 1VLL HIS A 0 UNP O28608 EXPRESSION TAG SEQADV 1VLL MET B -11 UNP O28608 EXPRESSION TAG SEQADV 1VLL GLY B -10 UNP O28608 EXPRESSION TAG SEQADV 1VLL SER B -9 UNP O28608 EXPRESSION TAG SEQADV 1VLL ASP B -8 UNP O28608 EXPRESSION TAG SEQADV 1VLL LYS B -7 UNP O28608 EXPRESSION TAG SEQADV 1VLL ILE B -6 UNP O28608 EXPRESSION TAG SEQADV 1VLL HIS B -5 UNP O28608 EXPRESSION TAG SEQADV 1VLL HIS B -4 UNP O28608 EXPRESSION TAG SEQADV 1VLL HIS B -3 UNP O28608 EXPRESSION TAG SEQADV 1VLL HIS B -2 UNP O28608 EXPRESSION TAG SEQADV 1VLL HIS B -1 UNP O28608 EXPRESSION TAG SEQADV 1VLL HIS B 0 UNP O28608 EXPRESSION TAG SEQRES 1 A 334 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 334 GLU THR LEU ILE LEU THR GLN GLU GLU VAL GLU SER LEU SEQRES 3 A 334 ILE SER MET ASP GLU ALA MET ASN ALA VAL GLU GLU ALA SEQRES 4 A 334 PHE ARG LEU TYR ALA LEU GLY LYS ALA GLN MET PRO PRO SEQRES 5 A 334 LYS VAL TYR LEU GLU PHE GLU LYS GLY ASP LEU ARG ALA SEQRES 6 A 334 MET PRO ALA HIS LEU MET GLY TYR ALA GLY LEU LYS TRP SEQRES 7 A 334 VAL ASN SER HIS PRO GLY ASN PRO ASP LYS GLY LEU PRO SEQRES 8 A 334 THR VAL MET ALA LEU MET ILE LEU ASN SER PRO GLU THR SEQRES 9 A 334 GLY PHE PRO LEU ALA VAL MET ASP ALA THR TYR THR THR SEQRES 10 A 334 SER LEU ARG THR GLY ALA ALA GLY GLY ILE ALA ALA LYS SEQRES 11 A 334 TYR LEU ALA ARG LYS ASN SER SER VAL PHE GLY PHE ILE SEQRES 12 A 334 GLY CYS GLY THR GLN ALA TYR PHE GLN LEU GLU ALA LEU SEQRES 13 A 334 ARG ARG VAL PHE ASP ILE GLY GLU VAL LYS ALA TYR ASP SEQRES 14 A 334 VAL ARG GLU LYS ALA ALA LYS LYS PHE VAL SER TYR CYS SEQRES 15 A 334 GLU ASP ARG GLY ILE SER ALA SER VAL GLN PRO ALA GLU SEQRES 16 A 334 GLU ALA SER ARG CYS ASP VAL LEU VAL THR THR THR PRO SEQRES 17 A 334 SER ARG LYS PRO VAL VAL LYS ALA GLU TRP VAL GLU GLU SEQRES 18 A 334 GLY THR HIS ILE ASN ALA ILE GLY ALA ASP GLY PRO GLY SEQRES 19 A 334 LYS GLN GLU LEU ASP VAL GLU ILE LEU LYS LYS ALA LYS SEQRES 20 A 334 ILE VAL VAL ASP ASP LEU GLU GLN ALA LYS HIS GLY GLY SEQRES 21 A 334 GLU ILE ASN VAL ALA VAL SER LYS GLY VAL ILE GLY VAL SEQRES 22 A 334 GLU ASP VAL HIS ALA THR ILE GLY GLU VAL ILE ALA GLY SEQRES 23 A 334 LEU LYS ASP GLY ARG GLU SER ASP GLU GLU ILE THR ILE SEQRES 24 A 334 PHE ASP SER THR GLY LEU ALA ILE GLN ASP VAL ALA VAL SEQRES 25 A 334 ALA LYS VAL VAL TYR GLU ASN ALA LEU SER LYS ASN VAL SEQRES 26 A 334 GLY SER LYS ILE LYS PHE PHE ARG ILE SEQRES 1 B 334 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 334 GLU THR LEU ILE LEU THR GLN GLU GLU VAL GLU SER LEU SEQRES 3 B 334 ILE SER MET ASP GLU ALA MET ASN ALA VAL GLU GLU ALA SEQRES 4 B 334 PHE ARG LEU TYR ALA LEU GLY LYS ALA GLN MET PRO PRO SEQRES 5 B 334 LYS VAL TYR LEU GLU PHE GLU LYS GLY ASP LEU ARG ALA SEQRES 6 B 334 MET PRO ALA HIS LEU MET GLY TYR ALA GLY LEU LYS TRP SEQRES 7 B 334 VAL ASN SER HIS PRO GLY ASN PRO ASP LYS GLY LEU PRO SEQRES 8 B 334 THR VAL MET ALA LEU MET ILE LEU ASN SER PRO GLU THR SEQRES 9 B 334 GLY PHE PRO LEU ALA VAL MET ASP ALA THR TYR THR THR SEQRES 10 B 334 SER LEU ARG THR GLY ALA ALA GLY GLY ILE ALA ALA LYS SEQRES 11 B 334 TYR LEU ALA ARG LYS ASN SER SER VAL PHE GLY PHE ILE SEQRES 12 B 334 GLY CYS GLY THR GLN ALA TYR PHE GLN LEU GLU ALA LEU SEQRES 13 B 334 ARG ARG VAL PHE ASP ILE GLY GLU VAL LYS ALA TYR ASP SEQRES 14 B 334 VAL ARG GLU LYS ALA ALA LYS LYS PHE VAL SER TYR CYS SEQRES 15 B 334 GLU ASP ARG GLY ILE SER ALA SER VAL GLN PRO ALA GLU SEQRES 16 B 334 GLU ALA SER ARG CYS ASP VAL LEU VAL THR THR THR PRO SEQRES 17 B 334 SER ARG LYS PRO VAL VAL LYS ALA GLU TRP VAL GLU GLU SEQRES 18 B 334 GLY THR HIS ILE ASN ALA ILE GLY ALA ASP GLY PRO GLY SEQRES 19 B 334 LYS GLN GLU LEU ASP VAL GLU ILE LEU LYS LYS ALA LYS SEQRES 20 B 334 ILE VAL VAL ASP ASP LEU GLU GLN ALA LYS HIS GLY GLY SEQRES 21 B 334 GLU ILE ASN VAL ALA VAL SER LYS GLY VAL ILE GLY VAL SEQRES 22 B 334 GLU ASP VAL HIS ALA THR ILE GLY GLU VAL ILE ALA GLY SEQRES 23 B 334 LEU LYS ASP GLY ARG GLU SER ASP GLU GLU ILE THR ILE SEQRES 24 B 334 PHE ASP SER THR GLY LEU ALA ILE GLN ASP VAL ALA VAL SEQRES 25 B 334 ALA LYS VAL VAL TYR GLU ASN ALA LEU SER LYS ASN VAL SEQRES 26 B 334 GLY SER LYS ILE LYS PHE PHE ARG ILE HELIX 1 1 THR A 7 SER A 13 1 7 HELIX 2 2 SER A 16 LEU A 33 1 18 HELIX 3 3 ASN A 73 GLY A 77 5 5 HELIX 4 4 ALA A 101 ALA A 121 1 21 HELIX 5 5 GLY A 134 ARG A 145 1 12 HELIX 6 6 ARG A 159 ASP A 172 1 14 HELIX 7 7 PRO A 181 SER A 186 1 6 HELIX 8 8 LYS A 203 VAL A 207 5 5 HELIX 9 9 ASP A 227 LYS A 233 1 7 HELIX 10 10 ASP A 240 GLY A 247 1 8 HELIX 11 11 ILE A 250 LYS A 256 1 7 HELIX 12 12 GLY A 260 GLU A 262 5 3 HELIX 13 13 ILE A 268 ALA A 273 1 6 HELIX 14 14 LEU A 293 LYS A 311 1 19 HELIX 15 15 THR B 7 SER B 13 1 7 HELIX 16 16 SER B 16 LEU B 33 1 18 HELIX 17 17 ASN B 73 GLY B 77 5 5 HELIX 18 18 ALA B 101 ALA B 121 1 21 HELIX 19 19 GLY B 134 ARG B 145 1 12 HELIX 20 20 ARG B 159 ASP B 172 1 14 HELIX 21 21 PRO B 181 SER B 186 1 6 HELIX 22 22 LYS B 203 VAL B 207 5 5 HELIX 23 23 ASP B 227 LYS B 233 1 7 HELIX 24 24 ASP B 240 GLY B 247 1 8 HELIX 25 25 ILE B 250 LYS B 256 1 7 HELIX 26 26 GLY B 260 GLU B 262 5 3 HELIX 27 27 ILE B 268 ALA B 273 1 6 HELIX 28 28 LEU B 293 LYS B 311 1 19 SHEET 1 A 7 VAL A 42 PHE A 46 0 SHEET 2 A 7 GLY A 49 LEU A 58 -1 O ALA A 53 N VAL A 42 SHEET 3 A 7 TYR A 61 SER A 69 -1 O LYS A 65 N MET A 54 SHEET 4 A 7 ALA A 83 ASN A 88 -1 O ASN A 88 N ALA A 62 SHEET 5 A 7 PRO A 95 ASP A 100 -1 O ALA A 97 N LEU A 87 SHEET 6 A 7 THR A 3 LEU A 6 1 N LEU A 4 O LEU A 96 SHEET 7 A 7 SER A 315 ILE A 317 -1 O ILE A 317 N THR A 3 SHEET 1 B 8 SER A 176 VAL A 179 0 SHEET 2 B 8 GLU A 152 TYR A 156 1 N ALA A 155 O SER A 178 SHEET 3 B 8 VAL A 127 ILE A 131 1 N PHE A 130 O LYS A 154 SHEET 4 B 8 VAL A 190 THR A 193 1 O VAL A 192 N GLY A 129 SHEET 5 B 8 HIS A 212 ALA A 215 1 O HIS A 212 N LEU A 191 SHEET 6 B 8 ILE A 285 ASP A 289 1 O PHE A 288 N ILE A 213 SHEET 7 B 8 ALA A 234 VAL A 238 1 N VAL A 237 O ASP A 289 SHEET 8 B 8 VAL A 264 THR A 267 1 O HIS A 265 N ILE A 236 SHEET 1 C 7 VAL B 42 PHE B 46 0 SHEET 2 C 7 GLY B 49 LEU B 58 -1 O ALA B 53 N VAL B 42 SHEET 3 C 7 TYR B 61 SER B 69 -1 O LYS B 65 N MET B 54 SHEET 4 C 7 ALA B 83 ASN B 88 -1 O ASN B 88 N ALA B 62 SHEET 5 C 7 PRO B 95 ASP B 100 -1 O ALA B 97 N LEU B 87 SHEET 6 C 7 THR B 3 LEU B 6 1 N LEU B 4 O LEU B 96 SHEET 7 C 7 SER B 315 ILE B 317 -1 O ILE B 317 N THR B 3 SHEET 1 D 8 SER B 176 VAL B 179 0 SHEET 2 D 8 GLU B 152 TYR B 156 1 N ALA B 155 O SER B 178 SHEET 3 D 8 VAL B 127 ILE B 131 1 N PHE B 130 O LYS B 154 SHEET 4 D 8 VAL B 190 THR B 193 1 O VAL B 190 N GLY B 129 SHEET 5 D 8 HIS B 212 ALA B 215 1 O HIS B 212 N LEU B 191 SHEET 6 D 8 ILE B 285 ASP B 289 1 O THR B 286 N ILE B 213 SHEET 7 D 8 ALA B 234 VAL B 238 1 N VAL B 237 O ILE B 287 SHEET 8 D 8 VAL B 264 THR B 267 1 O HIS B 265 N ILE B 236 CRYST1 56.702 92.437 131.783 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017636 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010818 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007588 0.00000