HEADER TRANSFERASE 05-AUG-04 1VLO TITLE CRYSTAL STRUCTURE OF AMINOMETHYLTRANSFERASE (T PROTEIN; TITLE 2 TETRAHYDROFOLATE-DEPENDENT) OF GLYCINE CLEAVAGE SYSTEM (NP417381) TITLE 3 FROM ESCHERICHIA COLI K12 AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOMETHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYCINE CLEAVAGE SYSTEM T PROTEIN; COMPND 5 EC: 2.1.2.10; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: T PROTEIN, TETRAHYDROFOLATE-DEPENDENT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: GCVT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS NP417381, AMINOMETHYLTRANSFERASE (T PROTEIN; TETRAHYDROFOLATE- KEYWDS 2 DEPENDENT) OF GLYCINE CLEAVAGE SYSTEM, STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI, JOINT CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 13-NOV-24 1VLO 1 REMARK REVDAT 6 25-JAN-23 1VLO 1 SEQADV LINK REVDAT 5 13-JUL-11 1VLO 1 VERSN REVDAT 4 24-FEB-09 1VLO 1 VERSN REVDAT 3 28-MAR-06 1VLO 1 JRNL REVDAT 2 18-JAN-05 1VLO 1 AUTHOR KEYWDS REMARK REVDAT 1 21-SEP-04 1VLO 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF AMINOMETHYLTRANSFERASE (T PROTEIN; JRNL TITL 2 TETRAHYDROFOLATE-DEPENDENT) OF GLYCINE CLEAVAGE SYSTEM JRNL TITL 3 (NP417381) FROM ESCHERICHIA COLI K12 AT 1.70 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0001 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 36059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1920 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2185 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2800 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 419 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : -0.94000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.757 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2897 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2645 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3933 ; 1.345 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6120 ; 0.798 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 373 ; 6.123 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;31.257 ;23.692 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 477 ;11.347 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;15.350 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 436 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3302 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 606 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 535 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2739 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1765 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 298 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.275 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.227 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1930 ; 1.811 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 761 ; 0.420 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2933 ; 2.244 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1170 ; 4.174 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1000 ; 5.419 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 367 REMARK 3 ORIGIN FOR THE GROUP (A): 33.0072 31.1459 5.7922 REMARK 3 T TENSOR REMARK 3 T11: -0.0415 T22: -0.0516 REMARK 3 T33: -0.0539 T12: -0.0032 REMARK 3 T13: 0.0035 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.3569 L22: 0.7287 REMARK 3 L33: 0.3645 L12: 0.0607 REMARK 3 L13: 0.1319 L23: -0.0480 REMARK 3 S TENSOR REMARK 3 S11: 0.0245 S12: 0.0316 S13: 0.0161 REMARK 3 S21: -0.0252 S22: -0.0068 S23: 0.0166 REMARK 3 S31: 0.0237 S32: -0.0210 S33: -0.0177 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VLO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000001988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-04; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL11-1; BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.885567; 0.979048,0.979494, REMARK 200 0.885567 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR; NULL REMARK 200 OPTICS : FLAT MIRROR; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38018 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 43.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38900 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.0% PEG-10000, 0.1M HEPES PH 7.5, REMARK 280 VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.25850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.57050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.28200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.57050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.25850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.28200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 THR A -5 REMARK 465 ASP A -4 REMARK 465 PRO A -3 REMARK 465 ALA A -2 REMARK 465 LEU A -1 REMARK 465 ARG A 0 REMARK 465 ALA A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 GLY A 368 REMARK 465 ARG A 369 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 166 CD OE1 NE2 REMARK 470 LYS A 172 CE NZ REMARK 470 GLU A 213 CD OE1 OE2 REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 470 ARG A 345 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 26 SE MSE A 26 CE -0.444 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 43 -101.03 -148.96 REMARK 500 ASP A 241 -169.79 -161.13 REMARK 500 GLU A 295 -1.59 74.26 REMARK 500 PHE A 356 -39.19 -132.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 358290 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIVE EXTRA AMINO ACID RESIDUES (GLY,LEU,CYS,GLY AND ARG) REMARK 999 WERE ENGINEERED INTO THE C-TERMINUS OF PROTEIN CHAIN DUE REMARK 999 TO THE CONSTRUCT DESIGN IN GENE CLONING PROCESS. ONLY REMARK 999 THREE RESIDUES (GLY,LEU AND CYS) OF THESE WERE OBSERVED REMARK 999 IN THE DENSITY AND INCLUDED IN THE MODEL. THE N-TERMINAL REMARK 999 MET OF THE PROTEIN (NOT INCLUDING THE HIS-TAG LINKER) IS REMARK 999 REMOVED FROM THE PROTEIN DUE TO THE CONSTRUCT DESIGN FOR REMARK 999 GENE CLONING. DBREF 1VLO A 1 363 UNP P27248 GCST_ECOLI 1 363 SEQADV 1VLO HIS A -11 UNP P27248 EXPRESSION TAG SEQADV 1VLO HIS A -11 UNP P27248 EXPRESSION TAG SEQADV 1VLO HIS A -10 UNP P27248 EXPRESSION TAG SEQADV 1VLO HIS A -9 UNP P27248 EXPRESSION TAG SEQADV 1VLO HIS A -8 UNP P27248 EXPRESSION TAG SEQADV 1VLO HIS A -7 UNP P27248 EXPRESSION TAG SEQADV 1VLO THR A -5 UNP P27248 EXPRESSION TAG SEQADV 1VLO ASP A -4 UNP P27248 EXPRESSION TAG SEQADV 1VLO PRO A -3 UNP P27248 EXPRESSION TAG SEQADV 1VLO ALA A -2 UNP P27248 EXPRESSION TAG SEQADV 1VLO LEU A -1 UNP P27248 EXPRESSION TAG SEQADV 1VLO ARG A 0 UNP P27248 EXPRESSION TAG SEQADV 1VLO ALA A 1 UNP P27248 EXPRESSION TAG SEQADV 1VLO MSE A 18 UNP P27248 MET 17 MODIFIED RESIDUE SEQADV 1VLO MSE A 25 UNP P27248 MET 24 MODIFIED RESIDUE SEQADV 1VLO MSE A 25 UNP P27248 MET 25 MODIFIED RESIDUE SEQADV 1VLO MSE A 46 UNP P27248 MET 45 MODIFIED RESIDUE SEQADV 1VLO MSE A 52 UNP P27248 MET 51 MODIFIED RESIDUE SEQADV 1VLO MSE A 88 UNP P27248 MET 87 MODIFIED RESIDUE SEQADV 1VLO MSE A 144 UNP P27248 MET 143 MODIFIED RESIDUE SEQADV 1VLO MSE A 171 UNP P27248 MET 170 MODIFIED RESIDUE SEQADV 1VLO MSE A 233 UNP P27248 MET 232 MODIFIED RESIDUE SEQADV 1VLO MSE A 240 UNP P27248 MET 239 MODIFIED RESIDUE SEQADV 1VLO MSE A 251 UNP P27248 MET 250 MODIFIED RESIDUE SEQADV 1VLO MSE A 286 UNP P27248 MET 285 MODIFIED RESIDUE SEQADV 1VLO MSE A 347 UNP P27248 MET 346 MODIFIED RESIDUE SEQADV 1VLO GLY A 365 UNP P27248 SEE REMARK 999 SEQADV 1VLO LEU A 366 UNP P27248 SEE REMARK 999 SEQADV 1VLO CYS A 367 UNP P27248 SEE REMARK 999 SEQADV 1VLO GLY A 368 UNP P27248 SEE REMARK 999 SEQADV 1VLO ARG A 369 UNP P27248 SEE REMARK 999 SEQRES 1 A 381 HIS HIS HIS HIS HIS HIS THR ASP PRO ALA LEU ARG ALA SEQRES 2 A 381 ALA GLN GLN THR PRO LEU TYR GLU GLN HIS THR LEU CYS SEQRES 3 A 381 GLY ALA ARG MSE VAL ASP PHE HIS GLY TRP MSE MSE PRO SEQRES 4 A 381 LEU HIS TYR GLY SER GLN ILE ASP GLU HIS HIS ALA VAL SEQRES 5 A 381 ARG THR ASP ALA GLY MSE PHE ASP VAL SER HIS MSE THR SEQRES 6 A 381 ILE VAL ASP LEU ARG GLY SER ARG THR ARG GLU PHE LEU SEQRES 7 A 381 ARG TYR LEU LEU ALA ASN ASP VAL ALA LYS LEU THR LYS SEQRES 8 A 381 SER GLY LYS ALA LEU TYR SER GLY MSE LEU ASN ALA SER SEQRES 9 A 381 GLY GLY VAL ILE ASP ASP LEU ILE VAL TYR TYR PHE THR SEQRES 10 A 381 GLU ASP PHE PHE ARG LEU VAL VAL ASN SER ALA THR ARG SEQRES 11 A 381 GLU LYS ASP LEU SER TRP ILE THR GLN HIS ALA GLU PRO SEQRES 12 A 381 PHE GLY ILE GLU ILE THR VAL ARG ASP ASP LEU SER MSE SEQRES 13 A 381 ILE ALA VAL GLN GLY PRO ASN ALA GLN ALA LYS ALA ALA SEQRES 14 A 381 THR LEU PHE ASN ASP ALA GLN ARG GLN ALA VAL GLU GLY SEQRES 15 A 381 MSE LYS PRO PHE PHE GLY VAL GLN ALA GLY ASP LEU PHE SEQRES 16 A 381 ILE ALA THR THR GLY TYR THR GLY GLU ALA GLY TYR GLU SEQRES 17 A 381 ILE ALA LEU PRO ASN GLU LYS ALA ALA ASP PHE TRP ARG SEQRES 18 A 381 ALA LEU VAL GLU ALA GLY VAL LYS PRO CYS GLY LEU GLY SEQRES 19 A 381 ALA ARG ASP THR LEU ARG LEU GLU ALA GLY MSE ASN LEU SEQRES 20 A 381 TYR GLY GLN GLU MSE ASP GLU THR ILE SER PRO LEU ALA SEQRES 21 A 381 ALA ASN MSE GLY TRP THR ILE ALA TRP GLU PRO ALA ASP SEQRES 22 A 381 ARG ASP PHE ILE GLY ARG GLU ALA LEU GLU VAL GLN ARG SEQRES 23 A 381 GLU HIS GLY THR GLU LYS LEU VAL GLY LEU VAL MSE THR SEQRES 24 A 381 GLU LYS GLY VAL LEU ARG ASN GLU LEU PRO VAL ARG PHE SEQRES 25 A 381 THR ASP ALA GLN GLY ASN GLN HIS GLU GLY ILE ILE THR SEQRES 26 A 381 SER GLY THR PHE SER PRO THR LEU GLY TYR SER ILE ALA SEQRES 27 A 381 LEU ALA ARG VAL PRO GLU GLY ILE GLY GLU THR ALA ILE SEQRES 28 A 381 VAL GLN ILE ARG ASN ARG GLU MSE PRO VAL LYS VAL THR SEQRES 29 A 381 LYS PRO VAL PHE VAL ARG ASN GLY LYS ALA VAL ALA GLY SEQRES 30 A 381 LEU CYS GLY ARG MODRES 1VLO MSE A 18 MET SELENOMETHIONINE MODRES 1VLO MSE A 25 MET SELENOMETHIONINE MODRES 1VLO MSE A 26 MET SELENOMETHIONINE MODRES 1VLO MSE A 46 MET SELENOMETHIONINE MODRES 1VLO MSE A 52 MET SELENOMETHIONINE MODRES 1VLO MSE A 88 MET SELENOMETHIONINE MODRES 1VLO MSE A 144 MET SELENOMETHIONINE MODRES 1VLO MSE A 171 MET SELENOMETHIONINE MODRES 1VLO MSE A 233 MET SELENOMETHIONINE MODRES 1VLO MSE A 240 MET SELENOMETHIONINE MODRES 1VLO MSE A 251 MET SELENOMETHIONINE MODRES 1VLO MSE A 286 MET SELENOMETHIONINE MODRES 1VLO MSE A 347 MET SELENOMETHIONINE HET MSE A 18 8 HET MSE A 25 16 HET MSE A 26 8 HET MSE A 46 8 HET MSE A 52 16 HET MSE A 88 8 HET MSE A 144 8 HET MSE A 171 8 HET MSE A 233 8 HET MSE A 240 8 HET MSE A 251 8 HET MSE A 286 8 HET MSE A 347 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 2 HOH *419(H2 O) HELIX 1 1 LEU A 7 CYS A 14 1 8 HELIX 2 2 SER A 32 ASP A 43 1 12 HELIX 3 3 ARG A 61 LEU A 70 1 10 HELIX 4 4 ASP A 73 LEU A 77 5 5 HELIX 5 5 ASN A 114 ALA A 116 5 3 HELIX 6 6 THR A 117 GLU A 130 1 14 HELIX 7 7 PRO A 131 GLY A 133 5 3 HELIX 8 8 ASN A 151 THR A 158 1 8 HELIX 9 9 ASN A 161 GLU A 169 1 9 HELIX 10 10 ASN A 201 ALA A 214 1 14 HELIX 11 11 GLY A 220 ALA A 231 1 12 HELIX 12 12 SER A 245 ALA A 249 5 5 HELIX 13 13 MSE A 251 ILE A 255 5 5 HELIX 14 14 GLY A 266 GLY A 277 1 12 HELIX 15 15 ALA A 364 CYS A 367 5 4 SHEET 1 A 2 ARG A 17 PHE A 21 0 SHEET 2 A 2 TRP A 24 HIS A 29 -1 O TRP A 24 N PHE A 21 SHEET 1 B 6 GLY A 176 ALA A 179 0 SHEET 2 B 6 LEU A 182 ALA A 185 -1 O LEU A 182 N ALA A 179 SHEET 3 B 6 GLY A 194 PRO A 200 -1 O ALA A 198 N PHE A 183 SHEET 4 B 6 LEU A 142 GLN A 148 -1 N VAL A 147 O TYR A 195 SHEET 5 B 6 GLY A 45 ASP A 48 -1 N GLY A 45 O GLN A 148 SHEET 6 B 6 LYS A 217 PRO A 218 1 O LYS A 217 N MSE A 46 SHEET 1 C 5 ALA A 83 LEU A 89 0 SHEET 2 C 5 VAL A 95 THR A 105 -1 O ILE A 96 N MSE A 88 SHEET 3 C 5 PHE A 108 VAL A 113 -1 O ARG A 110 N TYR A 102 SHEET 4 C 5 THR A 53 ARG A 58 -1 N THR A 53 O VAL A 113 SHEET 5 C 5 GLU A 135 VAL A 138 -1 O THR A 137 N ASP A 56 SHEET 1 D 7 LYS A 280 MSE A 286 0 SHEET 2 D 7 TYR A 323 VAL A 330 -1 O ALA A 328 N VAL A 282 SHEET 3 D 7 GLN A 307 SER A 318 -1 N SER A 314 O LEU A 327 SHEET 4 D 7 PRO A 297 THR A 301 -1 N PHE A 300 O HIS A 308 SHEET 5 D 7 THR A 337 ILE A 342 -1 O ILE A 339 N ARG A 299 SHEET 6 D 7 ARG A 345 THR A 352 -1 O ARG A 345 N ILE A 342 SHEET 7 D 7 LYS A 280 MSE A 286 -1 N VAL A 285 O LYS A 350 SHEET 1 E 2 VAL A 357 ARG A 358 0 SHEET 2 E 2 LYS A 361 ALA A 362 -1 O LYS A 361 N ARG A 358 LINK C ARG A 17 N MSE A 18 1555 1555 1.33 LINK C MSE A 18 N VAL A 19 1555 1555 1.33 LINK C TRP A 24 N AMSE A 25 1555 1555 1.33 LINK C TRP A 24 N BMSE A 25 1555 1555 1.33 LINK C AMSE A 25 N MSE A 26 1555 1555 1.33 LINK C BMSE A 25 N MSE A 26 1555 1555 1.34 LINK C MSE A 26 N PRO A 27 1555 1555 1.33 LINK C GLY A 45 N MSE A 46 1555 1555 1.32 LINK C MSE A 46 N PHE A 47 1555 1555 1.33 LINK C HIS A 51 N AMSE A 52 1555 1555 1.34 LINK C HIS A 51 N BMSE A 52 1555 1555 1.32 LINK C AMSE A 52 N THR A 53 1555 1555 1.33 LINK C BMSE A 52 N THR A 53 1555 1555 1.33 LINK C GLY A 87 N MSE A 88 1555 1555 1.34 LINK C MSE A 88 N LEU A 89 1555 1555 1.32 LINK C SER A 143 N MSE A 144 1555 1555 1.32 LINK C MSE A 144 N ILE A 145 1555 1555 1.33 LINK C GLY A 170 N MSE A 171 1555 1555 1.33 LINK C MSE A 171 N LYS A 172 1555 1555 1.33 LINK C GLY A 232 N MSE A 233 1555 1555 1.32 LINK C MSE A 233 N ASN A 234 1555 1555 1.34 LINK C GLU A 239 N MSE A 240 1555 1555 1.33 LINK C MSE A 240 N ASP A 241 1555 1555 1.32 LINK C ASN A 250 N MSE A 251 1555 1555 1.35 LINK C MSE A 251 N GLY A 252 1555 1555 1.33 LINK C VAL A 285 N MSE A 286 1555 1555 1.33 LINK C MSE A 286 N THR A 287 1555 1555 1.33 LINK C GLU A 346 N MSE A 347 1555 1555 1.32 LINK C MSE A 347 N PRO A 348 1555 1555 1.33 CISPEP 1 GLU A 258 PRO A 259 0 2.00 CRYST1 46.517 64.564 117.141 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021498 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015489 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008537 0.00000 CONECT 104 113 CONECT 113 104 114 CONECT 114 113 115 117 CONECT 115 114 116 121 CONECT 116 115 CONECT 117 114 118 CONECT 118 117 119 CONECT 119 118 120 CONECT 120 119 CONECT 121 115 CONECT 163 175 176 CONECT 175 163 177 CONECT 176 163 178 CONECT 177 175 179 183 CONECT 178 176 180 184 CONECT 179 177 181 191 CONECT 180 178 182 191 CONECT 181 179 CONECT 182 180 CONECT 183 177 185 CONECT 184 178 186 CONECT 185 183 187 CONECT 186 184 188 CONECT 187 185 189 CONECT 188 186 190 CONECT 189 187 CONECT 190 188 CONECT 191 179 180 192 CONECT 192 191 193 195 CONECT 193 192 194 199 CONECT 194 193 CONECT 195 192 196 CONECT 196 195 197 CONECT 197 196 198 CONECT 198 197 CONECT 199 193 CONECT 345 347 CONECT 347 345 348 CONECT 348 347 349 351 CONECT 349 348 350 355 CONECT 350 349 CONECT 351 348 352 CONECT 352 351 353 CONECT 353 352 354 CONECT 354 353 CONECT 355 349 CONECT 389 397 398 CONECT 397 389 399 CONECT 398 389 400 CONECT 399 397 401 405 CONECT 400 398 402 406 CONECT 401 399 403 413 CONECT 402 400 404 413 CONECT 403 401 CONECT 404 402 CONECT 405 399 407 CONECT 406 400 408 CONECT 407 405 409 CONECT 408 406 410 CONECT 409 407 411 CONECT 410 408 412 CONECT 411 409 CONECT 412 410 CONECT 413 401 402 CONECT 686 688 CONECT 688 686 689 CONECT 689 688 690 692 CONECT 690 689 691 696 CONECT 691 690 CONECT 692 689 693 CONECT 693 692 694 CONECT 694 693 695 CONECT 695 694 CONECT 696 690 CONECT 1142 1146 CONECT 1146 1142 1147 CONECT 1147 1146 1148 1150 CONECT 1148 1147 1149 1154 CONECT 1149 1148 CONECT 1150 1147 1151 CONECT 1151 1150 1152 CONECT 1152 1151 1153 CONECT 1153 1152 CONECT 1154 1148 CONECT 1342 1344 CONECT 1344 1342 1345 CONECT 1345 1344 1346 1348 CONECT 1346 1345 1347 1352 CONECT 1347 1346 CONECT 1348 1345 1349 CONECT 1349 1348 1350 CONECT 1350 1349 1351 CONECT 1351 1350 CONECT 1352 1346 CONECT 1799 1801 CONECT 1801 1799 1802 CONECT 1802 1801 1803 1805 CONECT 1803 1802 1804 1809 CONECT 1804 1803 CONECT 1805 1802 1806 CONECT 1806 1805 1807 CONECT 1807 1806 1808 CONECT 1808 1807 CONECT 1809 1803 CONECT 1852 1859 CONECT 1859 1852 1860 CONECT 1860 1859 1861 1863 CONECT 1861 1860 1862 1867 CONECT 1862 1861 CONECT 1863 1860 1864 CONECT 1864 1863 1865 CONECT 1865 1864 1866 CONECT 1866 1865 CONECT 1867 1861 CONECT 1932 1938 CONECT 1938 1932 1939 CONECT 1939 1938 1940 1942 CONECT 1940 1939 1941 1946 CONECT 1941 1940 CONECT 1942 1939 1943 CONECT 1943 1942 1944 CONECT 1944 1943 1945 CONECT 1945 1944 CONECT 1946 1940 CONECT 2215 2220 CONECT 2220 2215 2221 CONECT 2221 2220 2222 2224 CONECT 2222 2221 2223 2228 CONECT 2223 2222 CONECT 2224 2221 2225 CONECT 2225 2224 2226 CONECT 2226 2225 2227 CONECT 2227 2226 CONECT 2228 2222 CONECT 2675 2682 CONECT 2682 2675 2683 CONECT 2683 2682 2684 2686 CONECT 2684 2683 2685 2690 CONECT 2685 2684 CONECT 2686 2683 2687 CONECT 2687 2686 2688 CONECT 2688 2687 2689 CONECT 2689 2688 CONECT 2690 2684 MASTER 343 0 13 15 22 0 0 6 3219 1 144 30 END