HEADER RNA BINDING PROTEIN 10-AUG-04 1VLR TITLE CRYSTAL STRUCTURE OF MRNA DECAPPING ENZYME (DCPS) FROM MUS MUSCULUS AT TITLE 2 1.83 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA DECAPPING ENZYME; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HISTIDINE TRIAD PROTEIN MEMBER 5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DCPS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS 16740816, MRNA DECAPPING ENZYME (DCPS), STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 20-SEP-23 1VLR 1 REMARK REVDAT 6 25-JAN-23 1VLR 1 REMARK SEQADV REVDAT 5 24-FEB-09 1VLR 1 VERSN REVDAT 4 03-OCT-06 1VLR 1 JRNL REVDAT 3 28-MAR-06 1VLR 1 JRNL REVDAT 2 18-JAN-05 1VLR 1 AUTHOR KEYWDS REMARK REVDAT 1 24-AUG-04 1VLR 0 JRNL AUTH G.W.HAN,R.SCHWARZENBACHER,D.MCMULLAN,P.ABDUBEK,E.AMBING, JRNL AUTH 2 H.AXELROD,T.BIORAC,J.M.CANAVES,H.J.CHIU,X.DAI,A.M.DEACON, JRNL AUTH 3 M.DIDONATO,M.A.ELSLIGER,A.GODZIK,C.GRITTINI,S.K.GRZECHNIK, JRNL AUTH 4 J.HALE,E.HAMPTON,J.HAUGEN,M.HORNSBY,L.JAROSZEWSKI,H.E.KLOCK, JRNL AUTH 5 E.KOESEMA,A.KREUSCH,P.KUHN,S.A.LESLEY,T.M.MCPHILLIPS, JRNL AUTH 6 M.D.MILLER,K.MOY,E.NIGOGHOSSIAN,J.PAULSEN,K.QUIJANO,R.REYES, JRNL AUTH 7 G.SPRAGGON,R.C.STEVENS,H.VAN DEN BEDEM,J.VELASQUEZ, JRNL AUTH 8 J.VINCENT,A.WHITE,G.WOLF,Q.XU,K.O.HODGSON,J.WOOLEY, JRNL AUTH 9 I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF AN APO MRNA DECAPPING ENZYME (DCPS) JRNL TITL 2 FROM MOUSE AT 1.83 A RESOLUTION. JRNL REF PROTEINS V. 60 797 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 16001405 JRNL DOI 10.1002/PROT.20467 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0001 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 61546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3300 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3680 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4778 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 806 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.301 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5021 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4668 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6816 ; 1.667 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10820 ; 1.036 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 593 ; 6.429 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 254 ;34.324 ;23.150 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 885 ;13.137 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;18.691 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 768 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5497 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1043 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1003 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5150 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3254 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 612 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.015 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.225 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 117 ; 0.282 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 70 ; 0.206 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3154 ; 1.289 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1174 ; 0.334 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4858 ; 1.798 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2211 ; 2.751 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1958 ; 3.864 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THERE IS A LARGE UNMODELED PEAK IN THE DIFFERENCE MAP REMARK 3 NEAR THE CARBONYL OXYGEN OF PRO-287 IN BOTH CHAINS. REMARK 4 REMARK 4 1VLR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000001991. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64852 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 37.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.690 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 18.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.07 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38900 REMARK 200 FOR SHELL : 3.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1ST0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M KF, 20.0% PEG-3350, NO BUFFER PH REMARK 280 7.2, VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.61550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 PRO A 6 REMARK 465 GLN A 7 REMARK 465 LEU A 8 REMARK 465 LYS A 9 REMARK 465 ARG A 10 REMARK 465 LYS A 11 REMARK 465 ARG A 12 REMARK 465 GLU A 13 REMARK 465 GLN A 14 REMARK 465 GLU A 15 REMARK 465 ALA A 16 REMARK 465 GLU A 17 REMARK 465 GLU A 18 REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 THR A 21 REMARK 465 PRO A 22 REMARK 465 SER A 23 REMARK 465 THR A 24 REMARK 465 GLU A 25 REMARK 465 GLU A 26 REMARK 465 LYS A 27 REMARK 465 GLU A 28 REMARK 465 ALA A 29 REMARK 465 GLY A 30 REMARK 465 VAL A 31 REMARK 465 GLY A 32 REMARK 465 ASN A 33 REMARK 465 GLY A 34 REMARK 465 THR A 35 REMARK 465 SER A 36 REMARK 465 ALA A 37 REMARK 465 ASP A 70 REMARK 465 SER A 71 REMARK 465 GLY A 72 REMARK 465 ASP A 73 REMARK 465 THR A 74 REMARK 465 HIS A 75 REMARK 465 LYS A 182 REMARK 465 ALA A 183 REMARK 465 GLU A 184 REMARK 465 ALA A 185 REMARK 465 ASN A 338 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 THR B 4 REMARK 465 ALA B 5 REMARK 465 PRO B 6 REMARK 465 GLN B 7 REMARK 465 LEU B 8 REMARK 465 LYS B 9 REMARK 465 ARG B 10 REMARK 465 LYS B 11 REMARK 465 ARG B 12 REMARK 465 GLU B 13 REMARK 465 GLN B 14 REMARK 465 GLU B 15 REMARK 465 ALA B 16 REMARK 465 GLU B 17 REMARK 465 GLU B 18 REMARK 465 ALA B 19 REMARK 465 GLU B 20 REMARK 465 THR B 21 REMARK 465 PRO B 22 REMARK 465 SER B 23 REMARK 465 THR B 24 REMARK 465 GLU B 25 REMARK 465 GLU B 26 REMARK 465 LYS B 27 REMARK 465 GLU B 28 REMARK 465 ALA B 29 REMARK 465 GLY B 30 REMARK 465 VAL B 31 REMARK 465 GLY B 32 REMARK 465 ASN B 33 REMARK 465 GLY B 34 REMARK 465 THR B 35 REMARK 465 SER B 36 REMARK 465 ALA B 37 REMARK 465 PRO B 38 REMARK 465 ASP B 70 REMARK 465 SER B 71 REMARK 465 GLY B 72 REMARK 465 ASP B 73 REMARK 465 THR B 74 REMARK 465 HIS B 75 REMARK 465 GLY B 76 REMARK 465 ASN B 338 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 104 CD CE NZ REMARK 470 LYS A 137 CD CE NZ REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 186 CG OD1 OD2 REMARK 470 GLN A 328 CD OE1 NE2 REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 GLN A 335 CG CD OE1 NE2 REMARK 470 GLU B 69 CG CD OE1 OE2 REMARK 470 GLU B 91 CD OE1 OE2 REMARK 470 ASP B 110 CG OD1 OD2 REMARK 470 ARG B 144 CZ NH1 NH2 REMARK 470 LYS B 332 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 224 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 241 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP B 213 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG B 263 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP B 307 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP B 323 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 337 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 42 27.89 -76.46 REMARK 500 PHE A 46 115.49 -168.38 REMARK 500 ASN A 109 -156.48 -116.03 REMARK 500 SER A 228 -173.98 -176.86 REMARK 500 ARG A 293 -36.95 -134.92 REMARK 500 ASN B 109 -162.34 -102.76 REMARK 500 SER B 228 -177.56 -175.67 REMARK 500 TYR B 273 57.29 -99.98 REMARK 500 ARG B 293 -32.54 -140.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 340 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 354778 RELATED DB: TARGETDB DBREF 1VLR A 1 338 UNP Q9DAR7 DCPS_MOUSE 1 338 DBREF 1VLR B 1 338 UNP Q9DAR7 DCPS_MOUSE 1 338 SEQADV 1VLR MET A -11 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR GLY A -10 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR SER A -9 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR ASP A -8 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR LYS A -7 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR ILE A -6 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR HIS A -5 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR HIS A -4 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR HIS A -3 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR HIS A -2 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR HIS A -1 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR HIS A 0 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR MET B -11 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR GLY B -10 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR SER B -9 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR ASP B -8 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR LYS B -7 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR ILE B -6 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR HIS B -5 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR HIS B -4 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR HIS B -3 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR HIS B -2 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR HIS B -1 UNP Q9DAR7 EXPRESSION TAG SEQADV 1VLR HIS B 0 UNP Q9DAR7 EXPRESSION TAG SEQRES 1 A 350 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 350 ALA ASP THR ALA PRO GLN LEU LYS ARG LYS ARG GLU GLN SEQRES 3 A 350 GLU ALA GLU GLU ALA GLU THR PRO SER THR GLU GLU LYS SEQRES 4 A 350 GLU ALA GLY VAL GLY ASN GLY THR SER ALA PRO VAL ARG SEQRES 5 A 350 LEU PRO PHE SER GLY PHE ARG VAL GLN LYS VAL LEU ARG SEQRES 6 A 350 GLU SER ALA ARG ASP LYS ILE ILE PHE LEU HIS GLY LYS SEQRES 7 A 350 VAL ASN GLU ASP SER GLY ASP THR HIS GLY GLU ASP ALA SEQRES 8 A 350 VAL VAL ILE LEU GLU LYS THR PRO PHE GLN VAL GLU HIS SEQRES 9 A 350 VAL ALA GLN LEU LEU THR GLY SER PRO GLU LEU LYS LEU SEQRES 10 A 350 GLN PHE SER ASN ASP ILE TYR SER THR TYR ASN LEU PHE SEQRES 11 A 350 PRO PRO ARG HIS LEU SER ASP ILE LYS THR THR VAL VAL SEQRES 12 A 350 TYR PRO ALA THR GLU LYS HIS LEU GLN LYS TYR MET ARG SEQRES 13 A 350 GLN ASP LEU ARG LEU ILE ARG GLU THR GLY ASP ASP TYR SEQRES 14 A 350 ARG THR ILE THR LEU PRO TYR LEU GLU SER GLN SER LEU SEQRES 15 A 350 SER ILE GLN TRP VAL TYR ASN ILE LEU ASP LYS LYS ALA SEQRES 16 A 350 GLU ALA ASP ARG ILE VAL PHE GLU ASN PRO ASP PRO SER SEQRES 17 A 350 ASP GLY PHE VAL LEU ILE PRO ASP LEU LYS TRP ASN GLN SEQRES 18 A 350 GLN GLN LEU ASP ASP LEU TYR LEU ILE ALA ILE CYS HIS SEQRES 19 A 350 ARG ARG GLY ILE ARG SER LEU ARG ASP LEU THR PRO GLU SEQRES 20 A 350 HIS LEU PRO LEU LEU ARG ASN ILE LEU ARG GLU GLY GLN SEQRES 21 A 350 GLU ALA ILE LEU LYS ARG TYR GLN VAL THR GLY ASP ARG SEQRES 22 A 350 LEU ARG VAL TYR LEU HIS TYR LEU PRO SER TYR TYR HIS SEQRES 23 A 350 LEU HIS VAL HIS PHE THR ALA LEU GLY PHE GLU ALA PRO SEQRES 24 A 350 GLY SER GLY VAL GLU ARG ALA HIS LEU LEU ALA GLN VAL SEQRES 25 A 350 ILE GLU ASN LEU GLU CYS ASP PRO LYS HIS TYR GLN GLN SEQRES 26 A 350 ARG THR LEU THR PHE ALA LEU ARG THR ASP ASP PRO LEU SEQRES 27 A 350 LEU GLN LEU LEU GLN LYS ALA GLN GLN GLU ARG ASN SEQRES 1 B 350 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 350 ALA ASP THR ALA PRO GLN LEU LYS ARG LYS ARG GLU GLN SEQRES 3 B 350 GLU ALA GLU GLU ALA GLU THR PRO SER THR GLU GLU LYS SEQRES 4 B 350 GLU ALA GLY VAL GLY ASN GLY THR SER ALA PRO VAL ARG SEQRES 5 B 350 LEU PRO PHE SER GLY PHE ARG VAL GLN LYS VAL LEU ARG SEQRES 6 B 350 GLU SER ALA ARG ASP LYS ILE ILE PHE LEU HIS GLY LYS SEQRES 7 B 350 VAL ASN GLU ASP SER GLY ASP THR HIS GLY GLU ASP ALA SEQRES 8 B 350 VAL VAL ILE LEU GLU LYS THR PRO PHE GLN VAL GLU HIS SEQRES 9 B 350 VAL ALA GLN LEU LEU THR GLY SER PRO GLU LEU LYS LEU SEQRES 10 B 350 GLN PHE SER ASN ASP ILE TYR SER THR TYR ASN LEU PHE SEQRES 11 B 350 PRO PRO ARG HIS LEU SER ASP ILE LYS THR THR VAL VAL SEQRES 12 B 350 TYR PRO ALA THR GLU LYS HIS LEU GLN LYS TYR MET ARG SEQRES 13 B 350 GLN ASP LEU ARG LEU ILE ARG GLU THR GLY ASP ASP TYR SEQRES 14 B 350 ARG THR ILE THR LEU PRO TYR LEU GLU SER GLN SER LEU SEQRES 15 B 350 SER ILE GLN TRP VAL TYR ASN ILE LEU ASP LYS LYS ALA SEQRES 16 B 350 GLU ALA ASP ARG ILE VAL PHE GLU ASN PRO ASP PRO SER SEQRES 17 B 350 ASP GLY PHE VAL LEU ILE PRO ASP LEU LYS TRP ASN GLN SEQRES 18 B 350 GLN GLN LEU ASP ASP LEU TYR LEU ILE ALA ILE CYS HIS SEQRES 19 B 350 ARG ARG GLY ILE ARG SER LEU ARG ASP LEU THR PRO GLU SEQRES 20 B 350 HIS LEU PRO LEU LEU ARG ASN ILE LEU ARG GLU GLY GLN SEQRES 21 B 350 GLU ALA ILE LEU LYS ARG TYR GLN VAL THR GLY ASP ARG SEQRES 22 B 350 LEU ARG VAL TYR LEU HIS TYR LEU PRO SER TYR TYR HIS SEQRES 23 B 350 LEU HIS VAL HIS PHE THR ALA LEU GLY PHE GLU ALA PRO SEQRES 24 B 350 GLY SER GLY VAL GLU ARG ALA HIS LEU LEU ALA GLN VAL SEQRES 25 B 350 ILE GLU ASN LEU GLU CYS ASP PRO LYS HIS TYR GLN GLN SEQRES 26 B 350 ARG THR LEU THR PHE ALA LEU ARG THR ASP ASP PRO LEU SEQRES 27 B 350 LEU GLN LEU LEU GLN LYS ALA GLN GLN GLU ARG ASN HET EDO A 339 4 HET EDO A 340 4 HET EDO A 341 4 HET EDO A 342 4 HET EDO B 339 4 HET EDO B 340 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 6(C2 H6 O2) FORMUL 9 HOH *806(H2 O) HELIX 1 1 GLN A 89 THR A 98 1 10 HELIX 2 2 PRO A 120 ASP A 125 1 6 HELIX 3 3 THR A 135 MET A 143 1 9 HELIX 4 4 THR A 153 ILE A 160 1 8 HELIX 5 5 ILE A 160 SER A 169 1 10 HELIX 6 6 ILE A 172 ASP A 180 1 9 HELIX 7 7 SER A 228 LEU A 232 5 5 HELIX 8 8 THR A 233 GLU A 235 5 3 HELIX 9 9 HIS A 236 GLN A 256 1 21 HELIX 10 10 THR A 258 ASP A 260 5 3 HELIX 11 11 LEU A 297 ASP A 307 1 11 HELIX 12 12 LYS A 309 ARG A 314 1 6 HELIX 13 13 ASP A 324 ARG A 337 1 14 HELIX 14 14 GLN B 89 THR B 98 1 10 HELIX 15 15 PRO B 120 SER B 124 5 5 HELIX 16 16 THR B 135 MET B 143 1 9 HELIX 17 17 THR B 153 ILE B 160 1 8 HELIX 18 18 ILE B 160 SER B 167 1 8 HELIX 19 19 ILE B 172 ASP B 180 1 9 HELIX 20 20 GLU B 184 ILE B 188 5 5 HELIX 21 21 GLN B 211 ASP B 214 5 4 HELIX 22 22 SER B 228 LEU B 232 5 5 HELIX 23 23 THR B 233 GLU B 235 5 3 HELIX 24 24 HIS B 236 GLN B 256 1 21 HELIX 25 25 THR B 258 ASP B 260 5 3 HELIX 26 26 LEU B 297 ASP B 307 1 11 HELIX 27 27 LYS B 309 ARG B 314 1 6 HELIX 28 28 ASP B 324 ARG B 337 1 14 SHEET 1 A 6 ARG A 47 SER A 55 0 SHEET 2 A 6 ILE A 60 VAL A 67 -1 O HIS A 64 N LYS A 50 SHEET 3 A 6 GLU A 77 LYS A 85 -1 O GLU A 77 N VAL A 67 SHEET 4 A 6 ILE A 126 VAL A 131 -1 O VAL A 131 N VAL A 80 SHEET 5 A 6 TYR B 112 PHE B 118 -1 O SER B 113 N VAL A 130 SHEET 6 A 6 GLU B 102 SER B 108 -1 N GLU B 102 O PHE B 118 SHEET 1 B 6 GLU A 102 SER A 108 0 SHEET 2 B 6 TYR A 112 PHE A 118 -1 O THR A 114 N GLN A 106 SHEET 3 B 6 ILE B 126 VAL B 131 -1 O THR B 128 N TYR A 115 SHEET 4 B 6 ASP B 78 LYS B 85 -1 N VAL B 80 O VAL B 131 SHEET 5 B 6 ILE B 60 LYS B 66 -1 N LEU B 63 O VAL B 81 SHEET 6 B 6 ARG B 47 SER B 55 -1 N GLN B 49 O HIS B 64 SHEET 1 C 2 LEU A 147 GLU A 152 0 SHEET 2 C 2 LEU A 316 ARG A 321 -1 O PHE A 318 N ILE A 150 SHEET 1 D 6 PHE A 190 ASN A 192 0 SHEET 2 D 6 PHE A 199 PRO A 203 -1 O LEU A 201 N PHE A 190 SHEET 3 D 6 TYR A 216 CYS A 221 -1 O ILE A 218 N ILE A 202 SHEET 4 D 6 HIS A 276 ALA A 281 -1 O PHE A 279 N LEU A 217 SHEET 5 D 6 LEU A 262 HIS A 267 -1 N TYR A 265 O HIS A 278 SHEET 6 D 6 ALA A 294 LEU A 296 -1 O HIS A 295 N LEU A 266 SHEET 1 E 2 LEU B 147 GLU B 152 0 SHEET 2 E 2 LEU B 316 ARG B 321 -1 O PHE B 318 N ILE B 150 SHEET 1 F 6 PHE B 190 ASN B 192 0 SHEET 2 F 6 PHE B 199 PRO B 203 -1 O PHE B 199 N ASN B 192 SHEET 3 F 6 TYR B 216 CYS B 221 -1 O ILE B 218 N ILE B 202 SHEET 4 F 6 HIS B 276 ALA B 281 -1 O PHE B 279 N LEU B 217 SHEET 5 F 6 LEU B 262 HIS B 267 -1 N TYR B 265 O HIS B 278 SHEET 6 F 6 ALA B 294 LEU B 296 -1 O HIS B 295 N LEU B 266 CISPEP 1 TYR A 132 PRO A 133 0 -9.17 CISPEP 2 TYR A 268 LEU A 269 0 -0.21 CISPEP 3 TYR B 132 PRO B 133 0 -4.68 CISPEP 4 TYR B 268 LEU B 269 0 3.03 SITE 1 AC1 7 GLY B 45 ARG B 47 LYS B 66 VAL B 67 SITE 2 AC1 7 GLU B 69 GLU B 235 HOH B 565 SITE 1 AC2 6 PHE A 190 GLU A 246 GLU A 249 ALA A 250 SITE 2 AC2 6 LYS A 253 HOH A 568 SITE 1 AC3 1 GLY A 76 SITE 1 AC4 8 GLN A 299 HOH A 630 ASN B 303 HIS B 310 SITE 2 AC4 8 ARG B 314 THR B 315 LEU B 316 HOH B 701 SITE 1 AC5 8 ASN A 303 HIS A 310 ARG A 314 THR A 315 SITE 2 AC5 8 LEU A 316 HOH A 373 HOH A 497 GLN B 299 SITE 1 AC6 5 HOH A 444 PRO B 119 PRO B 120 ARG B 121 SITE 2 AC6 5 SER B 124 CRYST1 65.399 59.231 100.140 90.00 103.80 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015291 0.000000 0.003756 0.00000 SCALE2 0.000000 0.016883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010283 0.00000