HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-AUG-04 1VM0 TITLE X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT2G34160 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNKNOWN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT2G34160; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: B834-DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP13-GW KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, CESG, AT2G34160, KEYWDS 2 UNKNOWN FUNCTION, NITRATE, PSI, CENTER FOR EUKARYOTIC STRUCTURAL KEYWDS 3 GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR G.E.WESENBERG,D.W.SMITH,G.N.PHILLIPS JR.,E.BITTO,C.A.BINGMAN, AUTHOR 2 S.T.M.ALLARD,CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 8 27-DEC-23 1VM0 1 REMARK REVDAT 7 20-OCT-21 1VM0 1 REMARK SEQADV LINK REVDAT 6 04-OCT-17 1VM0 1 REMARK REVDAT 5 13-JUL-11 1VM0 1 VERSN REVDAT 4 24-FEB-09 1VM0 1 VERSN REVDAT 3 12-FEB-08 1VM0 1 REMARK REVDAT 2 01-FEB-05 1VM0 1 AUTHOR KEYWDS REMARK REVDAT 1 31-AUG-04 1VM0 0 JRNL AUTH CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS JRNL TITL X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA JRNL TITL 2 AT2G34160 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.198 REMARK 3 FREE R VALUE TEST SET COUNT : 1030 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1342 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1554 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.15800 REMARK 3 B22 (A**2) : -0.16500 REMARK 3 B33 (A**2) : -0.99300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.186 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1581 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1502 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2115 ; 2.001 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3519 ; 1.019 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 193 ; 5.378 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 253 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1680 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 278 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 285 ; 0.264 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1718 ; 0.247 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 761 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1008 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 115 ; 0.212 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.345 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 100 ; 0.304 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.291 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 988 ; 1.590 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 391 ; 0.347 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1584 ; 3.013 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1334 ; 1.349 ; 4.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 593 ; 5.327 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1111 ; 1.287 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 531 ; 8.468 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2185 ; 3.776 ; 8.000 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000001996. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 32-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97908,0.97931,0.97623 REMARK 200 MONOCHROMATOR : DIAMOND 111 MIRROR REMARK 200 OPTICS : RH MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37012 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.32900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SOLVE 2.06, RESOLVE 2.06 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN 10 MG/ML, 18% PEG2K, POTASSIUM REMARK 280 NITRATE 0.200 M, MOPS 0.100 M, PH 7.0, BATCH, TEMPERATURE 293 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 29.89250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.53950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.89250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.53950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE PROBABLE BIOLOGICAL UNIT REMARK 300 IS A TETRAMER. SEE REMARK 350 FOR INFORMATION ON REMARK 300 GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 59.78500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 79.07900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 ILE A 4 REMARK 465 THR A 5 REMARK 465 ASP A 6 REMARK 465 GLY A 7 REMARK 465 VAL A 8 REMARK 465 ASN A 9 REMARK 465 ASN A 10 REMARK 465 MSE A 11 REMARK 465 ASN A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 THR A 15 REMARK 465 ASP A 16 REMARK 465 SER A 17 REMARK 465 GLN A 18 REMARK 465 ASP A 88 REMARK 465 ASP A 89 REMARK 465 ALA A 90 REMARK 465 ARG A 91 REMARK 465 GLY A 92 REMARK 465 ARG A 93 REMARK 465 ASN A 118 REMARK 465 GLU A 119 REMARK 465 GLU A 120 REMARK 465 LYS A 121 REMARK 465 GLU A 122 REMARK 465 ASP A 123 REMARK 465 ALA A 124 REMARK 465 GLU A 125 REMARK 465 THR A 126 REMARK 465 GLN A 127 REMARK 465 VAL A 128 REMARK 465 GLN A 129 REMARK 465 ASN A 130 REMARK 465 SER B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 ILE B 4 REMARK 465 THR B 5 REMARK 465 ASP B 6 REMARK 465 GLY B 7 REMARK 465 VAL B 8 REMARK 465 ASN B 9 REMARK 465 ASN B 10 REMARK 465 MSE B 11 REMARK 465 ASN B 12 REMARK 465 LEU B 13 REMARK 465 ALA B 14 REMARK 465 THR B 15 REMARK 465 ASP B 16 REMARK 465 SER B 17 REMARK 465 GLN B 18 REMARK 465 LYS B 19 REMARK 465 ASP B 123 REMARK 465 ALA B 124 REMARK 465 GLU B 125 REMARK 465 THR B 126 REMARK 465 GLN B 127 REMARK 465 VAL B 128 REMARK 465 GLN B 129 REMARK 465 ASN B 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 37 O HOH A 468 2.08 REMARK 500 O HOH B 459 O HOH B 472 2.11 REMARK 500 OE2 GLU B 50 O HOH B 494 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 434 O HOH B 434 2665 2.01 REMARK 500 O HOH A 418 O HOH A 418 2665 2.04 REMARK 500 O HOH A 420 O HOH B 422 2664 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE B 43 SE MSE B 43 CE -0.831 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 89 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 47 -41.52 86.52 REMARK 500 SER B 26 -10.42 -150.02 REMARK 500 ASN B 47 -31.86 80.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 19 O REMARK 620 2 LYS A 20 O 67.6 REMARK 620 3 ARG A 22 O 86.5 101.2 REMARK 620 4 TYR A 42 OH 132.1 66.8 88.4 REMARK 620 5 HOH A 422 O 75.8 139.4 93.3 152.1 REMARK 620 6 HOH B 423 O 151.0 140.8 91.0 76.6 75.5 REMARK 620 7 HOH B 432 O 92.6 73.1 174.1 87.9 92.0 92.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 300 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 26 O REMARK 620 2 SER B 26 O 107.7 REMARK 620 3 GLU B 120 O 101.4 150.8 REMARK 620 4 GLU B 120 OE1 84.7 90.8 90.3 REMARK 620 5 GLU B 122 OE2 81.9 81.9 104.1 162.0 REMARK 620 6 HOH B 437 O 175.4 76.4 74.6 97.3 96.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.8793 RELATED DB: TARGETDB DBREF 1VM0 A 2 130 UNP O22969 Y2416_ARATH 2 130 DBREF 1VM0 B 2 130 UNP O22969 Y2416_ARATH 2 130 SEQADV 1VM0 SER A 1 UNP O22969 CLONING ARTIFACT SEQADV 1VM0 MSE A 11 UNP O22969 MET 11 MODIFIED RESIDUE SEQADV 1VM0 MSE A 43 UNP O22969 MET 43 MODIFIED RESIDUE SEQADV 1VM0 MSE A 56 UNP O22969 MET 56 MODIFIED RESIDUE SEQADV 1VM0 MSE A 80 UNP O22969 MET 80 MODIFIED RESIDUE SEQADV 1VM0 ILE A 83 UNP O22969 THR 83 ENGINEERED MUTATION SEQADV 1VM0 MSE A 114 UNP O22969 MET 114 MODIFIED RESIDUE SEQADV 1VM0 THR A 126 UNP O22969 ALA 126 ENGINEERED MUTATION SEQADV 1VM0 SER B 1 UNP O22969 CLONING ARTIFACT SEQADV 1VM0 MSE B 11 UNP O22969 MET 11 MODIFIED RESIDUE SEQADV 1VM0 MSE B 43 UNP O22969 MET 43 MODIFIED RESIDUE SEQADV 1VM0 MSE B 56 UNP O22969 MET 56 MODIFIED RESIDUE SEQADV 1VM0 MSE B 80 UNP O22969 MET 80 MODIFIED RESIDUE SEQADV 1VM0 ILE B 83 UNP O22969 THR 83 ENGINEERED MUTATION SEQADV 1VM0 MSE B 114 UNP O22969 MET 114 MODIFIED RESIDUE SEQADV 1VM0 THR B 126 UNP O22969 ALA 126 ENGINEERED MUTATION SEQRES 1 A 130 SER GLU GLU ILE THR ASP GLY VAL ASN ASN MSE ASN LEU SEQRES 2 A 130 ALA THR ASP SER GLN LYS LYS ASN ARG ILE GLN VAL SER SEQRES 3 A 130 ASN THR LYS LYS PRO LEU PHE PHE TYR VAL ASN LEU ALA SEQRES 4 A 130 LYS ARG TYR MSE GLN GLN TYR ASN ASP VAL GLU LEU SER SEQRES 5 A 130 ALA LEU GLY MSE ALA ILE ALA THR VAL VAL THR VAL THR SEQRES 6 A 130 GLU ILE LEU LYS ASN ASN GLY PHE ALA VAL GLU LYS LYS SEQRES 7 A 130 ILE MSE THR SER ILE VAL ASP ILE LYS ASP ASP ALA ARG SEQRES 8 A 130 GLY ARG PRO VAL GLN LYS ALA LYS ILE GLU ILE THR LEU SEQRES 9 A 130 VAL LYS SER GLU LYS PHE ASP GLU LEU MSE ALA ALA ALA SEQRES 10 A 130 ASN GLU GLU LYS GLU ASP ALA GLU THR GLN VAL GLN ASN SEQRES 1 B 130 SER GLU GLU ILE THR ASP GLY VAL ASN ASN MSE ASN LEU SEQRES 2 B 130 ALA THR ASP SER GLN LYS LYS ASN ARG ILE GLN VAL SER SEQRES 3 B 130 ASN THR LYS LYS PRO LEU PHE PHE TYR VAL ASN LEU ALA SEQRES 4 B 130 LYS ARG TYR MSE GLN GLN TYR ASN ASP VAL GLU LEU SER SEQRES 5 B 130 ALA LEU GLY MSE ALA ILE ALA THR VAL VAL THR VAL THR SEQRES 6 B 130 GLU ILE LEU LYS ASN ASN GLY PHE ALA VAL GLU LYS LYS SEQRES 7 B 130 ILE MSE THR SER ILE VAL ASP ILE LYS ASP ASP ALA ARG SEQRES 8 B 130 GLY ARG PRO VAL GLN LYS ALA LYS ILE GLU ILE THR LEU SEQRES 9 B 130 VAL LYS SER GLU LYS PHE ASP GLU LEU MSE ALA ALA ALA SEQRES 10 B 130 ASN GLU GLU LYS GLU ASP ALA GLU THR GLN VAL GLN ASN MODRES 1VM0 MSE A 43 MET SELENOMETHIONINE MODRES 1VM0 MSE A 56 MET SELENOMETHIONINE MODRES 1VM0 MSE A 80 MET SELENOMETHIONINE MODRES 1VM0 MSE A 114 MET SELENOMETHIONINE MODRES 1VM0 MSE B 43 MET SELENOMETHIONINE MODRES 1VM0 MSE B 56 MET SELENOMETHIONINE MODRES 1VM0 MSE B 80 MET SELENOMETHIONINE MODRES 1VM0 MSE B 114 MET SELENOMETHIONINE HET MSE A 43 8 HET MSE A 56 8 HET MSE A 80 8 HET MSE A 114 8 HET MSE B 43 8 HET MSE B 56 8 HET MSE B 80 8 HET MSE B 114 8 HET K A 301 1 HET NO3 A 402 4 HET K B 300 1 HET NO3 B 400 4 HET NO3 B 401 4 HET NO3 B 403 4 HETNAM MSE SELENOMETHIONINE HETNAM K POTASSIUM ION HETNAM NO3 NITRATE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 K 2(K 1+) FORMUL 4 NO3 4(N O3 1-) FORMUL 9 HOH *161(H2 O) HELIX 1 1 PRO A 31 ASN A 47 1 17 HELIX 2 2 ALA A 57 ASN A 71 1 15 HELIX 3 3 LYS A 109 ALA A 117 1 9 HELIX 4 4 PRO B 31 ASN B 47 1 17 HELIX 5 5 ALA B 57 ASN B 71 1 15 HELIX 6 6 LYS B 109 ASN B 118 1 10 SHEET 1 A 4 ARG A 22 GLN A 24 0 SHEET 2 A 4 ASP A 48 LEU A 54 1 O GLU A 50 N ILE A 23 SHEET 3 A 4 VAL A 95 LYS A 106 -1 O ILE A 102 N LEU A 51 SHEET 4 A 4 ALA A 74 ILE A 86 -1 N LYS A 78 O THR A 103 SHEET 1 B 4 ARG B 22 VAL B 25 0 SHEET 2 B 4 ASP B 48 LEU B 54 1 O GLU B 50 N ILE B 23 SHEET 3 B 4 VAL B 95 LYS B 106 -1 O ILE B 102 N LEU B 51 SHEET 4 B 4 ALA B 74 ILE B 86 -1 N ILE B 86 O VAL B 95 LINK C TYR A 42 N MSE A 43 1555 1555 1.33 LINK C MSE A 43 N GLN A 44 1555 1555 1.32 LINK C GLY A 55 N MSE A 56 1555 1555 1.33 LINK C MSE A 56 N ALA A 57 1555 1555 1.34 LINK C ILE A 79 N MSE A 80 1555 1555 1.34 LINK C MSE A 80 N THR A 81 1555 1555 1.33 LINK C LEU A 113 N MSE A 114 1555 1555 1.33 LINK C MSE A 114 N ALA A 115 1555 1555 1.33 LINK C TYR B 42 N MSE B 43 1555 1555 1.33 LINK C MSE B 43 N GLN B 44 1555 1555 1.33 LINK C GLY B 55 N MSE B 56 1555 1555 1.33 LINK C MSE B 56 N ALA B 57 1555 1555 1.33 LINK C ILE B 79 N MSE B 80 1555 1555 1.33 LINK C MSE B 80 N THR B 81 1555 1555 1.33 LINK C LEU B 113 N MSE B 114 1555 1555 1.33 LINK C MSE B 114 N ALA B 115 1555 1555 1.33 LINK O LYS A 19 K K A 301 1555 1555 2.62 LINK O LYS A 20 K K A 301 1555 1555 3.47 LINK O ARG A 22 K K A 301 1555 1555 2.58 LINK O SER A 26 K K B 300 3557 1555 2.57 LINK OH TYR A 42 K K A 301 1555 1555 2.93 LINK K K A 301 O HOH A 422 1555 1555 2.77 LINK K K A 301 O HOH B 423 1555 3547 2.72 LINK K K A 301 O HOH B 432 1555 3547 2.75 LINK O SER B 26 K K B 300 3557 1555 2.54 LINK O GLU B 120 K K B 300 1555 1555 2.82 LINK OE1 GLU B 120 K K B 300 1555 1555 2.67 LINK OE2 GLU B 122 K K B 300 1555 1555 2.76 LINK K K B 300 O HOH B 437 1555 1555 2.85 SITE 1 AC1 7 LYS A 19 LYS A 20 ARG A 22 TYR A 42 SITE 2 AC1 7 HOH A 422 HOH B 423 HOH B 432 SITE 1 AC2 5 LYS A 40 ILE A 67 ASN A 71 PHE A 73 SITE 2 AC2 5 PHE B 33 SITE 1 AC3 5 SER A 26 SER B 26 GLU B 120 GLU B 122 SITE 2 AC3 5 HOH B 437 SITE 1 AC4 7 GLU A 66 ILE A 67 ASN A 70 ASN A 71 SITE 2 AC4 7 HOH A 406 LEU B 32 PHE B 33 SITE 1 AC5 8 PRO A 31 LEU A 32 PHE A 33 GLU B 66 SITE 2 AC5 8 ILE B 67 ASN B 70 ASN B 71 HOH B 409 SITE 1 AC6 5 PHE A 33 LYS B 40 ILE B 67 ASN B 71 SITE 2 AC6 5 PHE B 73 CRYST1 59.785 79.079 43.730 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016727 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022868 0.00000