HEADER TRANSFERASE 08-SEP-04 1VM7 TITLE CRYSTAL STRUCTURE OF RIBOKINASE (TM0960) FROM THERMOTOGA MARITIMA AT TITLE 2 2.15 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.15; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM0960; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM0960, RIBOKINASE, STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, PSI, JOINT CENTER FOR STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 20-SEP-23 1VM7 1 REMARK REVDAT 6 25-JAN-23 1VM7 1 SEQADV REVDAT 5 13-JUL-11 1VM7 1 VERSN REVDAT 4 24-FEB-09 1VM7 1 VERSN REVDAT 3 28-MAR-06 1VM7 1 JRNL REMARK REVDAT 2 18-JAN-05 1VM7 1 AUTHOR KEYWDS REMARK REVDAT 1 21-SEP-04 1VM7 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF RIBOKINASE (TM0960) FROM THERMOTOGA JRNL TITL 2 MARITIMA AT 2.15 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 32122 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1676 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2001 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4537 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 279 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.99000 REMARK 3 B22 (A**2) : -1.20000 REMARK 3 B33 (A**2) : -0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.85000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.255 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.629 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4616 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4267 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6254 ; 1.477 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9937 ; 0.862 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 594 ; 6.023 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 198 ;37.216 ;25.758 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 787 ;14.158 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.355 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 730 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5174 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 886 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 983 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4503 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2332 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2937 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 299 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.059 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.160 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.254 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3053 ; 0.550 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1222 ; 0.160 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4757 ; 0.839 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1765 ; 1.559 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1497 ; 2.376 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 12 A 40 2 REMARK 3 1 B 12 B 40 2 REMARK 3 2 A 92 A 110 2 REMARK 3 2 B 92 B 110 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 280 ; 0.10 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 452 ; 0.57 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 280 ; 0.15 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 452 ; 0.58 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 11 2 REMARK 3 1 B 2 B 11 2 REMARK 3 2 A 41 A 91 2 REMARK 3 2 B 41 B 91 2 REMARK 3 3 A 111 A 299 2 REMARK 3 3 B 111 B 298 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 1466 ; 0.08 ; 0.05 REMARK 3 MEDIUM POSITIONAL 2 A (A): 2151 ; 0.47 ; 0.50 REMARK 3 TIGHT THERMAL 2 A (A**2): 1466 ; 0.14 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 2151 ; 0.47 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 40 REMARK 3 RESIDUE RANGE : A 92 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): 118.1258 8.1973 30.3153 REMARK 3 T TENSOR REMARK 3 T11: -0.2314 T22: -0.1512 REMARK 3 T33: -0.1361 T12: -0.0269 REMARK 3 T13: -0.0092 T23: -0.0454 REMARK 3 L TENSOR REMARK 3 L11: 1.4097 L22: 5.3338 REMARK 3 L33: 2.3413 L12: -0.1989 REMARK 3 L13: 0.1364 L23: -1.9080 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: 0.0141 S13: 0.0273 REMARK 3 S21: 0.1811 S22: -0.0842 S23: -0.3560 REMARK 3 S31: 0.0228 S32: 0.3008 S33: 0.0765 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 11 REMARK 3 RESIDUE RANGE : A 41 A 91 REMARK 3 RESIDUE RANGE : A 111 A 299 REMARK 3 ORIGIN FOR THE GROUP (A): 119.9698 24.6232 10.3268 REMARK 3 T TENSOR REMARK 3 T11: -0.0623 T22: -0.1675 REMARK 3 T33: -0.1186 T12: -0.0003 REMARK 3 T13: 0.0584 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: 2.2708 L22: 3.3775 REMARK 3 L33: 3.9110 L12: 0.1257 REMARK 3 L13: -0.5773 L23: 1.3100 REMARK 3 S TENSOR REMARK 3 S11: 0.0962 S12: 0.2396 S13: -0.1662 REMARK 3 S21: -0.6821 S22: 0.0196 S23: -0.2459 REMARK 3 S31: -0.4551 S32: 0.1916 S33: -0.1157 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 40 REMARK 3 RESIDUE RANGE : B 92 B 110 REMARK 3 ORIGIN FOR THE GROUP (A): 108.5727 4.0896 30.3330 REMARK 3 T TENSOR REMARK 3 T11: -0.2046 T22: -0.1970 REMARK 3 T33: -0.1624 T12: -0.0150 REMARK 3 T13: 0.0196 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 1.7284 L22: 2.4665 REMARK 3 L33: 4.8066 L12: -0.4790 REMARK 3 L13: -1.6196 L23: 2.1772 REMARK 3 S TENSOR REMARK 3 S11: -0.0406 S12: 0.0765 S13: 0.0013 REMARK 3 S21: -0.0761 S22: -0.0369 S23: 0.0564 REMARK 3 S31: 0.1516 S32: -0.1963 S33: 0.0776 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 11 REMARK 3 RESIDUE RANGE : B 41 B 91 REMARK 3 RESIDUE RANGE : B 111 B 298 REMARK 3 ORIGIN FOR THE GROUP (A): 103.0448 -0.6870 54.1135 REMARK 3 T TENSOR REMARK 3 T11: -0.1548 T22: -0.0935 REMARK 3 T33: -0.1765 T12: -0.0267 REMARK 3 T13: -0.0241 T23: -0.0762 REMARK 3 L TENSOR REMARK 3 L11: 2.5380 L22: 3.7947 REMARK 3 L33: 2.9346 L12: 0.7870 REMARK 3 L13: 0.6684 L23: -0.5269 REMARK 3 S TENSOR REMARK 3 S11: 0.2518 S12: -0.3016 S13: -0.1608 REMARK 3 S21: 0.4269 S22: -0.0861 S23: -0.0569 REMARK 3 S31: 0.1483 S32: -0.2322 S33: -0.1657 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THERE IS SOME UNEXPLAINED DENSITY AT THE 2-FOLD NEAR REMARK 3 B235-B236 MAIN CHAIN. REMARK 4 REMARK 4 1VM7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000002003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39375 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 60.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.68200 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1GQT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M (NH4)2TARTRATE, 0.4% PEG-3350, REMARK 280 VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 90.57100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.63250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 90.57100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.63250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 354 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LEU B 299 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 30 CE NZ REMARK 470 ASN A 124 CB CG OD1 ND2 REMARK 470 GLU A 128 OE2 REMARK 470 GLN A 162 OE1 NE2 REMARK 470 LYS A 187 CD CE NZ REMARK 470 LYS A 218 CD CE NZ REMARK 470 ASN A 226 OD1 ND2 REMARK 470 GLU A 227 CG CD OE1 OE2 REMARK 470 LYS A 228 CD CE NZ REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 THR A 233 OG1 CG2 REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 LEU A 280 CD1 REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 LYS B 180 CD CE NZ REMARK 470 LYS B 218 CE NZ REMARK 470 GLU B 227 CG CD OE1 OE2 REMARK 470 LYS B 235 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 298 C ASN A 298 O 0.139 REMARK 500 ASN A 298 C LEU A 299 N 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 194 -70.27 -91.31 REMARK 500 ASP A 240 109.71 -166.15 REMARK 500 ALA A 282 -91.00 -87.51 REMARK 500 ASN A 298 -4.48 -53.71 REMARK 500 LEU B 194 -72.09 -85.61 REMARK 500 ASP B 240 112.72 -162.35 REMARK 500 ALA B 282 -88.78 -90.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282829 RELATED DB: TARGETDB DBREF 1VM7 A 1 299 UNP Q9X055 Q9X055_THEMA 1 299 DBREF 1VM7 B 1 299 UNP Q9X055 Q9X055_THEMA 1 299 SEQADV 1VM7 MET A -11 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 GLY A -10 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 SER A -9 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 ASP A -8 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 LYS A -7 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 ILE A -6 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 HIS A -5 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 HIS A -4 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 HIS A -3 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 HIS A -2 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 HIS A -1 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 HIS A 0 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 MET B -11 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 GLY B -10 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 SER B -9 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 ASP B -8 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 LYS B -7 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 ILE B -6 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 HIS B -5 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 HIS B -4 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 HIS B -3 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 HIS B -2 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 HIS B -1 UNP Q9X055 EXPRESSION TAG SEQADV 1VM7 HIS B 0 UNP Q9X055 EXPRESSION TAG SEQRES 1 A 311 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 311 PHE LEU VAL ILE SER VAL VAL GLY SER SER ASN ILE ASP SEQRES 3 A 311 ILE VAL LEU LYS VAL ASP HIS PHE THR LYS PRO GLY GLU SEQRES 4 A 311 THR GLN LYS ALA ILE GLU MET ASN VAL PHE PRO GLY GLY SEQRES 5 A 311 LYS GLY ALA ASN GLN ALA VAL THR VAL ALA LYS ILE GLY SEQRES 6 A 311 GLU LYS GLY CYS ARG PHE VAL THR CYS ILE GLY ASN ASP SEQRES 7 A 311 ASP TYR SER ASP LEU LEU ILE GLU ASN TYR GLU LYS LEU SEQRES 8 A 311 GLY ILE THR GLY TYR ILE ARG VAL SER LEU PRO THR GLY SEQRES 9 A 311 ARG ALA PHE ILE GLU VAL ASP LYS THR GLY GLN ASN ARG SEQRES 10 A 311 ILE ILE ILE PHE PRO GLY ALA ASN ALA GLU LEU LYS LYS SEQRES 11 A 311 GLU LEU ILE ASP TRP ASN THR LEU SER GLU SER ASP ILE SEQRES 12 A 311 LEU LEU LEU GLN ASN GLU ILE PRO PHE GLU THR THR LEU SEQRES 13 A 311 GLU CYS ALA LYS ARG PHE ASN GLY ILE VAL ILE PHE ASP SEQRES 14 A 311 PRO ALA PRO ALA GLN GLY ILE ASN GLU GLU ILE PHE GLN SEQRES 15 A 311 TYR LEU ASP TYR LEU THR PRO ASN GLU LYS GLU ILE GLU SEQRES 16 A 311 ALA LEU SER LYS ASP PHE PHE GLY GLU PHE LEU THR VAL SEQRES 17 A 311 GLU LYS ALA ALA GLU LYS PHE LEU GLU LEU GLY VAL LYS SEQRES 18 A 311 ASN VAL ILE VAL LYS LEU GLY ASP LYS GLY VAL LEU LEU SEQRES 19 A 311 VAL ASN LYS ASN GLU LYS LYS HIS PHE PRO THR PHE LYS SEQRES 20 A 311 VAL LYS ALA VAL ASP THR THR ALA ALA GLY ASP VAL PHE SEQRES 21 A 311 ASN GLY ALA PHE ALA VAL ALA LEU SER GLU GLY LYS ASN SEQRES 22 A 311 PRO GLU GLU ALA VAL ILE PHE GLY THR ALA ALA ALA ALA SEQRES 23 A 311 ILE SER VAL THR ARG LEU GLY ALA GLN SER SER ILE PRO SEQRES 24 A 311 ALA ARG GLU GLU VAL GLU ALA PHE LEU LYS ASN LEU SEQRES 1 B 311 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 311 PHE LEU VAL ILE SER VAL VAL GLY SER SER ASN ILE ASP SEQRES 3 B 311 ILE VAL LEU LYS VAL ASP HIS PHE THR LYS PRO GLY GLU SEQRES 4 B 311 THR GLN LYS ALA ILE GLU MET ASN VAL PHE PRO GLY GLY SEQRES 5 B 311 LYS GLY ALA ASN GLN ALA VAL THR VAL ALA LYS ILE GLY SEQRES 6 B 311 GLU LYS GLY CYS ARG PHE VAL THR CYS ILE GLY ASN ASP SEQRES 7 B 311 ASP TYR SER ASP LEU LEU ILE GLU ASN TYR GLU LYS LEU SEQRES 8 B 311 GLY ILE THR GLY TYR ILE ARG VAL SER LEU PRO THR GLY SEQRES 9 B 311 ARG ALA PHE ILE GLU VAL ASP LYS THR GLY GLN ASN ARG SEQRES 10 B 311 ILE ILE ILE PHE PRO GLY ALA ASN ALA GLU LEU LYS LYS SEQRES 11 B 311 GLU LEU ILE ASP TRP ASN THR LEU SER GLU SER ASP ILE SEQRES 12 B 311 LEU LEU LEU GLN ASN GLU ILE PRO PHE GLU THR THR LEU SEQRES 13 B 311 GLU CYS ALA LYS ARG PHE ASN GLY ILE VAL ILE PHE ASP SEQRES 14 B 311 PRO ALA PRO ALA GLN GLY ILE ASN GLU GLU ILE PHE GLN SEQRES 15 B 311 TYR LEU ASP TYR LEU THR PRO ASN GLU LYS GLU ILE GLU SEQRES 16 B 311 ALA LEU SER LYS ASP PHE PHE GLY GLU PHE LEU THR VAL SEQRES 17 B 311 GLU LYS ALA ALA GLU LYS PHE LEU GLU LEU GLY VAL LYS SEQRES 18 B 311 ASN VAL ILE VAL LYS LEU GLY ASP LYS GLY VAL LEU LEU SEQRES 19 B 311 VAL ASN LYS ASN GLU LYS LYS HIS PHE PRO THR PHE LYS SEQRES 20 B 311 VAL LYS ALA VAL ASP THR THR ALA ALA GLY ASP VAL PHE SEQRES 21 B 311 ASN GLY ALA PHE ALA VAL ALA LEU SER GLU GLY LYS ASN SEQRES 22 B 311 PRO GLU GLU ALA VAL ILE PHE GLY THR ALA ALA ALA ALA SEQRES 23 B 311 ILE SER VAL THR ARG LEU GLY ALA GLN SER SER ILE PRO SEQRES 24 B 311 ALA ARG GLU GLU VAL GLU ALA PHE LEU LYS ASN LEU FORMUL 3 HOH *279(H2 O) HELIX 1 1 GLY A 40 GLU A 54 1 15 HELIX 2 2 ASP A 66 LEU A 79 1 14 HELIX 3 3 PRO A 110 LEU A 116 5 7 HELIX 4 4 LYS A 117 ILE A 121 5 5 HELIX 5 5 ASP A 122 SER A 127 1 6 HELIX 6 6 PRO A 139 PHE A 150 1 12 HELIX 7 7 ASN A 165 LEU A 172 5 8 HELIX 8 8 ASN A 178 GLY A 191 1 14 HELIX 9 9 THR A 195 LEU A 206 1 12 HELIX 10 10 GLY A 216 LYS A 218 5 3 HELIX 11 11 ALA A 243 GLU A 258 1 16 HELIX 12 12 ASN A 261 VAL A 277 1 17 HELIX 13 13 ALA A 282 ILE A 286 5 5 HELIX 14 14 ALA A 288 ASN A 298 1 11 HELIX 15 15 GLY B 40 GLU B 54 1 15 HELIX 16 16 ASP B 66 GLY B 80 1 15 HELIX 17 17 PRO B 110 LEU B 116 5 7 HELIX 18 18 LYS B 117 ILE B 121 5 5 HELIX 19 19 ASP B 122 SER B 127 1 6 HELIX 20 20 PRO B 139 PHE B 150 1 12 HELIX 21 21 ASN B 165 LEU B 172 5 8 HELIX 22 22 ASN B 178 GLY B 191 1 14 HELIX 23 23 THR B 195 LEU B 206 1 12 HELIX 24 24 GLY B 216 LYS B 218 5 3 HELIX 25 25 ALA B 243 GLU B 258 1 16 HELIX 26 26 ASN B 261 VAL B 277 1 17 HELIX 27 27 ALA B 282 ILE B 286 5 5 HELIX 28 28 ALA B 288 ASN B 298 1 11 SHEET 1 A 9 ILE A 81 ARG A 86 0 SHEET 2 A 9 CYS A 57 ILE A 63 1 N PHE A 59 O THR A 82 SHEET 3 A 9 ILE A 5 VAL A 8 1 N VAL A 7 O VAL A 60 SHEET 4 A 9 ILE A 131 LEU A 134 1 O LEU A 133 N SER A 6 SHEET 5 A 9 ILE A 153 PHE A 156 1 O ILE A 153 N LEU A 132 SHEET 6 A 9 TYR A 174 LEU A 175 1 O TYR A 174 N PHE A 156 SHEET 7 A 9 ASN A 210 LYS A 214 1 O ILE A 212 N LEU A 175 SHEET 8 A 9 VAL A 220 ASN A 224 -1 O VAL A 223 N VAL A 211 SHEET 9 A 9 GLU A 227 PHE A 231 -1 O PHE A 231 N VAL A 220 SHEET 1 B 5 GLU A 33 GLY A 39 0 SHEET 2 B 5 ASN A 12 LYS A 18 -1 N ASP A 14 O PHE A 37 SHEET 3 B 5 ARG A 93 VAL A 98 1 O ILE A 96 N LEU A 17 SHEET 4 B 5 ASN A 104 PHE A 109 -1 O ILE A 107 N PHE A 95 SHEET 5 B 5 THR B 28 LYS B 30 1 O GLN B 29 N ILE A 106 SHEET 1 C 5 THR A 28 LYS A 30 0 SHEET 2 C 5 ASN B 104 PHE B 109 1 O ILE B 106 N GLN A 29 SHEET 3 C 5 ARG B 93 VAL B 98 -1 N PHE B 95 O ILE B 107 SHEET 4 C 5 ASN B 12 LYS B 18 1 N ILE B 15 O ALA B 94 SHEET 5 C 5 GLU B 33 GLY B 39 -1 O PHE B 37 N ASP B 14 SHEET 1 D 9 ILE B 81 ARG B 86 0 SHEET 2 D 9 CYS B 57 ILE B 63 1 N PHE B 59 O THR B 82 SHEET 3 D 9 ILE B 5 VAL B 8 1 N VAL B 7 O VAL B 60 SHEET 4 D 9 ILE B 131 LEU B 134 1 O LEU B 133 N VAL B 8 SHEET 5 D 9 ILE B 153 PHE B 156 1 O ILE B 153 N LEU B 132 SHEET 6 D 9 TYR B 174 LEU B 175 1 O TYR B 174 N PHE B 156 SHEET 7 D 9 ASN B 210 LYS B 214 1 O ILE B 212 N LEU B 175 SHEET 8 D 9 VAL B 220 ASN B 224 -1 O LEU B 221 N VAL B 213 SHEET 9 D 9 GLU B 227 PHE B 231 -1 O PHE B 231 N VAL B 220 CISPEP 1 ALA A 159 PRO A 160 0 -10.24 CISPEP 2 ALA B 159 PRO B 160 0 -6.32 CRYST1 181.142 45.265 77.260 90.00 93.30 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005521 0.000000 0.000318 0.00000 SCALE2 0.000000 0.022092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012965 0.00000