data_1VM9 # _entry.id 1VM9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VM9 pdb_00001vm9 10.2210/pdb1vm9/pdb RCSB RCSB002005 ? ? WWPDB D_1000002005 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-09-21 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2021-10-20 6 'Structure model' 1 5 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' 6 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' pdbx_struct_conn_angle 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site 7 6 'Structure model' chem_comp_atom 8 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.value' 17 5 'Structure model' '_struct_conn.pdbx_dist_value' 18 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 5 'Structure model' '_struct_ref_seq_dif.details' 31 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 32 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 33 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 1VM9 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2004-09-13 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id GO.34660 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wesenberg, G.E.' 1 'Smith, D.W.' 2 'Phillips Jr., G.N.' 3 'Bingman, C.A.' 4 'Allard, S.T.M.' 5 'Moe, L.A.' 6 'Fox, B.G.' 7 'Center for Eukaryotic Structural Genomics (CESG)' 8 # _citation.id primary _citation.title 'Structure of T4moC, the Rieske-type ferredoxin component of toluene 4-monooxygenase.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 62 _citation.page_first 476 _citation.page_last 482 _citation.year 2006 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16627939 _citation.pdbx_database_id_DOI 10.1107/S0907444906006056 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Moe, L.A.' 1 ? primary 'Bingman, C.A.' 2 ? primary 'Wesenberg, G.E.' 3 ? primary 'Phillips, G.N.' 4 ? primary 'Fox, B.G.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Toluene-4-monooxygenase system protein C' 12141.370 1 ? C84A,C85A ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 non-polymer syn 'FE2/S2 (INORGANIC) CLUSTER' 175.820 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 5 water nat water 18.015 133 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINP DDAALAEYPVEVKGDDIYVSTKGILPNKAHS ; _entity_poly.pdbx_seq_one_letter_code_can ;SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINP DDAALAEYPVEVKGDDIYVSTKGILPNKAHS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier GO.34660 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'FE2/S2 (INORGANIC) CLUSTER' FES 4 1,2-ETHANEDIOL EDO 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 PHE n 1 3 GLU n 1 4 LYS n 1 5 ILE n 1 6 CYS n 1 7 SER n 1 8 LEU n 1 9 ASP n 1 10 ASP n 1 11 ILE n 1 12 TRP n 1 13 VAL n 1 14 GLY n 1 15 GLU n 1 16 MET n 1 17 GLU n 1 18 THR n 1 19 PHE n 1 20 GLU n 1 21 THR n 1 22 SER n 1 23 ASP n 1 24 GLY n 1 25 THR n 1 26 GLU n 1 27 VAL n 1 28 LEU n 1 29 ILE n 1 30 VAL n 1 31 ASN n 1 32 SER n 1 33 GLU n 1 34 GLU n 1 35 HIS n 1 36 GLY n 1 37 VAL n 1 38 LYS n 1 39 ALA n 1 40 TYR n 1 41 GLN n 1 42 ALA n 1 43 MET n 1 44 CYS n 1 45 PRO n 1 46 HIS n 1 47 GLN n 1 48 GLU n 1 49 ILE n 1 50 LEU n 1 51 LEU n 1 52 SER n 1 53 GLU n 1 54 GLY n 1 55 SER n 1 56 TYR n 1 57 GLU n 1 58 GLY n 1 59 GLY n 1 60 VAL n 1 61 ILE n 1 62 THR n 1 63 CYS n 1 64 ARG n 1 65 ALA n 1 66 HIS n 1 67 LEU n 1 68 TRP n 1 69 THR n 1 70 PHE n 1 71 ASN n 1 72 ASP n 1 73 GLY n 1 74 THR n 1 75 GLY n 1 76 HIS n 1 77 GLY n 1 78 ILE n 1 79 ASN n 1 80 PRO n 1 81 ASP n 1 82 ASP n 1 83 ALA n 1 84 ALA n 1 85 LEU n 1 86 ALA n 1 87 GLU n 1 88 TYR n 1 89 PRO n 1 90 VAL n 1 91 GLU n 1 92 VAL n 1 93 LYS n 1 94 GLY n 1 95 ASP n 1 96 ASP n 1 97 ILE n 1 98 TYR n 1 99 VAL n 1 100 SER n 1 101 THR n 1 102 LYS n 1 103 GLY n 1 104 ILE n 1 105 LEU n 1 106 PRO n 1 107 ASN n 1 108 LYS n 1 109 ALA n 1 110 HIS n 1 111 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pseudomonas _entity_src_gen.pdbx_gene_src_gene tmoC _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain KR1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas mendocina' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 300 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pT4CD15bTET(C84AC85A)' _entity_src_gen.plasmid_details 'pET15b derivative' _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 FES non-polymer . 'FE2/S2 (INORGANIC) CLUSTER' ? 'Fe2 S2' 175.820 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 2 2 SER SER A . n A 1 2 PHE 2 3 3 PHE PHE A . n A 1 3 GLU 3 4 4 GLU GLU A . n A 1 4 LYS 4 5 5 LYS LYS A . n A 1 5 ILE 5 6 6 ILE ILE A . n A 1 6 CYS 6 7 7 CYS CYS A . n A 1 7 SER 7 8 8 SER SER A . n A 1 8 LEU 8 9 9 LEU LEU A . n A 1 9 ASP 9 10 10 ASP ASP A . n A 1 10 ASP 10 11 11 ASP ASP A . n A 1 11 ILE 11 12 12 ILE ILE A . n A 1 12 TRP 12 13 13 TRP TRP A . n A 1 13 VAL 13 14 14 VAL VAL A . n A 1 14 GLY 14 15 15 GLY GLY A . n A 1 15 GLU 15 16 16 GLU GLU A . n A 1 16 MET 16 17 17 MET MET A . n A 1 17 GLU 17 18 18 GLU GLU A . n A 1 18 THR 18 19 19 THR THR A . n A 1 19 PHE 19 20 20 PHE PHE A . n A 1 20 GLU 20 21 21 GLU GLU A . n A 1 21 THR 21 22 22 THR THR A . n A 1 22 SER 22 23 23 SER SER A . n A 1 23 ASP 23 24 24 ASP ASP A . n A 1 24 GLY 24 25 25 GLY GLY A . n A 1 25 THR 25 26 26 THR THR A . n A 1 26 GLU 26 27 27 GLU GLU A . n A 1 27 VAL 27 28 28 VAL VAL A . n A 1 28 LEU 28 29 29 LEU LEU A . n A 1 29 ILE 29 30 30 ILE ILE A . n A 1 30 VAL 30 31 31 VAL VAL A . n A 1 31 ASN 31 32 32 ASN ASN A . n A 1 32 SER 32 33 33 SER SER A . n A 1 33 GLU 33 34 34 GLU GLU A . n A 1 34 GLU 34 35 35 GLU GLU A . n A 1 35 HIS 35 36 36 HIS HIS A . n A 1 36 GLY 36 37 37 GLY GLY A . n A 1 37 VAL 37 38 38 VAL VAL A . n A 1 38 LYS 38 39 39 LYS LYS A . n A 1 39 ALA 39 40 40 ALA ALA A . n A 1 40 TYR 40 41 41 TYR TYR A . n A 1 41 GLN 41 42 42 GLN GLN A . n A 1 42 ALA 42 43 43 ALA ALA A . n A 1 43 MET 43 44 44 MET MET A . n A 1 44 CYS 44 45 45 CYS CYS A . n A 1 45 PRO 45 46 46 PRO PRO A . n A 1 46 HIS 46 47 47 HIS HIS A . n A 1 47 GLN 47 48 48 GLN GLN A . n A 1 48 GLU 48 49 49 GLU GLU A . n A 1 49 ILE 49 50 50 ILE ILE A . n A 1 50 LEU 50 51 51 LEU LEU A . n A 1 51 LEU 51 52 52 LEU LEU A . n A 1 52 SER 52 53 53 SER SER A . n A 1 53 GLU 53 54 54 GLU GLU A . n A 1 54 GLY 54 55 55 GLY GLY A . n A 1 55 SER 55 56 56 SER SER A . n A 1 56 TYR 56 57 57 TYR TYR A . n A 1 57 GLU 57 58 58 GLU GLU A . n A 1 58 GLY 58 59 59 GLY GLY A . n A 1 59 GLY 59 60 60 GLY GLY A . n A 1 60 VAL 60 61 61 VAL VAL A . n A 1 61 ILE 61 62 62 ILE ILE A . n A 1 62 THR 62 63 63 THR THR A . n A 1 63 CYS 63 64 64 CYS CYS A . n A 1 64 ARG 64 65 65 ARG ARG A . n A 1 65 ALA 65 66 66 ALA ALA A . n A 1 66 HIS 66 67 67 HIS HIS A . n A 1 67 LEU 67 68 68 LEU LEU A . n A 1 68 TRP 68 69 69 TRP TRP A . n A 1 69 THR 69 70 70 THR THR A . n A 1 70 PHE 70 71 71 PHE PHE A . n A 1 71 ASN 71 72 72 ASN ASN A . n A 1 72 ASP 72 73 73 ASP ASP A . n A 1 73 GLY 73 74 74 GLY GLY A . n A 1 74 THR 74 75 75 THR THR A . n A 1 75 GLY 75 76 76 GLY GLY A . n A 1 76 HIS 76 77 77 HIS HIS A . n A 1 77 GLY 77 78 78 GLY GLY A . n A 1 78 ILE 78 79 79 ILE ILE A . n A 1 79 ASN 79 80 80 ASN ASN A . n A 1 80 PRO 80 81 81 PRO PRO A . n A 1 81 ASP 81 82 82 ASP ASP A . n A 1 82 ASP 82 83 83 ASP ASP A . n A 1 83 ALA 83 84 84 ALA ALA A . n A 1 84 ALA 84 85 85 ALA ALA A . n A 1 85 LEU 85 86 86 LEU LEU A . n A 1 86 ALA 86 87 87 ALA ALA A . n A 1 87 GLU 87 88 88 GLU GLU A . n A 1 88 TYR 88 89 89 TYR TYR A . n A 1 89 PRO 89 90 90 PRO PRO A . n A 1 90 VAL 90 91 91 VAL VAL A . n A 1 91 GLU 91 92 92 GLU GLU A . n A 1 92 VAL 92 93 93 VAL VAL A . n A 1 93 LYS 93 94 94 LYS LYS A . n A 1 94 GLY 94 95 95 GLY GLY A . n A 1 95 ASP 95 96 96 ASP ASP A . n A 1 96 ASP 96 97 97 ASP ASP A . n A 1 97 ILE 97 98 98 ILE ILE A . n A 1 98 TYR 98 99 99 TYR TYR A . n A 1 99 VAL 99 100 100 VAL VAL A . n A 1 100 SER 100 101 101 SER SER A . n A 1 101 THR 101 102 102 THR THR A . n A 1 102 LYS 102 103 103 LYS LYS A . n A 1 103 GLY 103 104 104 GLY GLY A . n A 1 104 ILE 104 105 105 ILE ILE A . n A 1 105 LEU 105 106 106 LEU LEU A . n A 1 106 PRO 106 107 107 PRO PRO A . n A 1 107 ASN 107 108 108 ASN ASN A . n A 1 108 LYS 108 109 109 LYS LYS A . n A 1 109 ALA 109 110 110 ALA ALA A . n A 1 110 HIS 110 111 ? ? ? A . n A 1 111 SER 111 112 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 901 901 MG MG A . C 2 MG 1 902 902 MG MG A . D 3 FES 1 900 900 FES FES A . E 4 EDO 1 801 801 EDO EDO A . F 4 EDO 1 802 802 EDO EDO A . G 4 EDO 1 803 803 EDO EDO A . H 5 HOH 1 903 1 HOH HOH A . H 5 HOH 2 904 2 HOH HOH A . H 5 HOH 3 905 3 HOH HOH A . H 5 HOH 4 906 4 HOH HOH A . H 5 HOH 5 907 5 HOH HOH A . H 5 HOH 6 908 6 HOH HOH A . H 5 HOH 7 909 7 HOH HOH A . H 5 HOH 8 910 8 HOH HOH A . H 5 HOH 9 911 9 HOH HOH A . H 5 HOH 10 912 10 HOH HOH A . H 5 HOH 11 913 11 HOH HOH A . H 5 HOH 12 914 12 HOH HOH A . H 5 HOH 13 915 13 HOH HOH A . H 5 HOH 14 916 14 HOH HOH A . H 5 HOH 15 917 15 HOH HOH A . H 5 HOH 16 918 16 HOH HOH A . H 5 HOH 17 919 17 HOH HOH A . H 5 HOH 18 920 18 HOH HOH A . H 5 HOH 19 921 19 HOH HOH A . H 5 HOH 20 922 20 HOH HOH A . H 5 HOH 21 923 21 HOH HOH A . H 5 HOH 22 924 22 HOH HOH A . H 5 HOH 23 925 23 HOH HOH A . H 5 HOH 24 926 24 HOH HOH A . H 5 HOH 25 927 25 HOH HOH A . H 5 HOH 26 928 26 HOH HOH A . H 5 HOH 27 929 27 HOH HOH A . H 5 HOH 28 930 28 HOH HOH A . H 5 HOH 29 931 29 HOH HOH A . H 5 HOH 30 932 30 HOH HOH A . H 5 HOH 31 933 31 HOH HOH A . H 5 HOH 32 934 32 HOH HOH A . H 5 HOH 33 935 33 HOH HOH A . H 5 HOH 34 936 34 HOH HOH A . H 5 HOH 35 937 35 HOH HOH A . H 5 HOH 36 938 36 HOH HOH A . H 5 HOH 37 939 37 HOH HOH A . H 5 HOH 38 940 38 HOH HOH A . H 5 HOH 39 941 39 HOH HOH A . H 5 HOH 40 942 40 HOH HOH A . H 5 HOH 41 943 41 HOH HOH A . H 5 HOH 42 944 43 HOH HOH A . H 5 HOH 43 945 44 HOH HOH A . H 5 HOH 44 946 45 HOH HOH A . H 5 HOH 45 947 46 HOH HOH A . H 5 HOH 46 948 47 HOH HOH A . H 5 HOH 47 949 48 HOH HOH A . H 5 HOH 48 950 49 HOH HOH A . H 5 HOH 49 951 50 HOH HOH A . H 5 HOH 50 952 51 HOH HOH A . H 5 HOH 51 953 52 HOH HOH A . H 5 HOH 52 954 53 HOH HOH A . H 5 HOH 53 955 54 HOH HOH A . H 5 HOH 54 956 55 HOH HOH A . H 5 HOH 55 957 56 HOH HOH A . H 5 HOH 56 958 57 HOH HOH A . H 5 HOH 57 959 58 HOH HOH A . H 5 HOH 58 960 60 HOH HOH A . H 5 HOH 59 961 61 HOH HOH A . H 5 HOH 60 962 62 HOH HOH A . H 5 HOH 61 963 63 HOH HOH A . H 5 HOH 62 964 64 HOH HOH A . H 5 HOH 63 965 66 HOH HOH A . H 5 HOH 64 966 67 HOH HOH A . H 5 HOH 65 967 69 HOH HOH A . H 5 HOH 66 968 70 HOH HOH A . H 5 HOH 67 969 71 HOH HOH A . H 5 HOH 68 970 72 HOH HOH A . H 5 HOH 69 971 74 HOH HOH A . H 5 HOH 70 972 75 HOH HOH A . H 5 HOH 71 973 76 HOH HOH A . H 5 HOH 72 974 78 HOH HOH A . H 5 HOH 73 975 79 HOH HOH A . H 5 HOH 74 976 80 HOH HOH A . H 5 HOH 75 977 81 HOH HOH A . H 5 HOH 76 978 82 HOH HOH A . H 5 HOH 77 979 83 HOH HOH A . H 5 HOH 78 980 84 HOH HOH A . H 5 HOH 79 981 85 HOH HOH A . H 5 HOH 80 982 86 HOH HOH A . H 5 HOH 81 983 88 HOH HOH A . H 5 HOH 82 984 89 HOH HOH A . H 5 HOH 83 985 90 HOH HOH A . H 5 HOH 84 986 91 HOH HOH A . H 5 HOH 85 987 92 HOH HOH A . H 5 HOH 86 988 93 HOH HOH A . H 5 HOH 87 989 94 HOH HOH A . H 5 HOH 88 990 95 HOH HOH A . H 5 HOH 89 991 96 HOH HOH A . H 5 HOH 90 992 97 HOH HOH A . H 5 HOH 91 993 98 HOH HOH A . H 5 HOH 92 994 100 HOH HOH A . H 5 HOH 93 995 101 HOH HOH A . H 5 HOH 94 996 103 HOH HOH A . H 5 HOH 95 997 104 HOH HOH A . H 5 HOH 96 998 105 HOH HOH A . H 5 HOH 97 999 106 HOH HOH A . H 5 HOH 98 1000 107 HOH HOH A . H 5 HOH 99 1001 108 HOH HOH A . H 5 HOH 100 1002 109 HOH HOH A . H 5 HOH 101 1003 110 HOH HOH A . H 5 HOH 102 1004 111 HOH HOH A . H 5 HOH 103 1005 112 HOH HOH A . H 5 HOH 104 1006 113 HOH HOH A . H 5 HOH 105 1007 114 HOH HOH A . H 5 HOH 106 1008 115 HOH HOH A . H 5 HOH 107 1009 116 HOH HOH A . H 5 HOH 108 1010 118 HOH HOH A . H 5 HOH 109 1011 119 HOH HOH A . H 5 HOH 110 1012 120 HOH HOH A . H 5 HOH 111 1013 122 HOH HOH A . H 5 HOH 112 1014 126 HOH HOH A . H 5 HOH 113 1015 127 HOH HOH A . H 5 HOH 114 1016 128 HOH HOH A . H 5 HOH 115 1017 129 HOH HOH A . H 5 HOH 116 1018 133 HOH HOH A . H 5 HOH 117 1019 134 HOH HOH A . H 5 HOH 118 1020 135 HOH HOH A . H 5 HOH 119 1021 139 HOH HOH A . H 5 HOH 120 1022 144 HOH HOH A . H 5 HOH 121 1023 146 HOH HOH A . H 5 HOH 122 1024 147 HOH HOH A . H 5 HOH 123 1025 149 HOH HOH A . H 5 HOH 124 1026 151 HOH HOH A . H 5 HOH 125 1027 152 HOH HOH A . H 5 HOH 126 1028 153 HOH HOH A . H 5 HOH 127 1029 155 HOH HOH A . H 5 HOH 128 1030 157 HOH HOH A . H 5 HOH 129 1031 160 HOH HOH A . H 5 HOH 130 1032 161 HOH HOH A . H 5 HOH 131 1033 162 HOH HOH A . H 5 HOH 132 1034 163 HOH HOH A . H 5 HOH 133 1035 164 HOH HOH A . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 SOLVE 2.06 28-Dec-2003 program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 RESOLVE 2.06 02-Jan-2004 program 'Terwilliger, T. C' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 REFMAC refmac_5.1.24 24/04/2001 program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 5 PDB_EXTRACT 1.0 02/20/2004 program H.Yang sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C/C++ ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 8 ARP/wARP . ? ? ? ? 'model building' ? ? ? 9 # _cell.entry_id 1VM9 _cell.length_a 44.510 _cell.length_b 52.400 _cell.length_c 83.556 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1VM9 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1VM9 _exptl.crystals_number 2 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 38.67 _exptl_crystal.density_Matthews 2.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;10 MG/ML PROTEIN, 0.100M MES-ACETATE, 0.16M MAGNESIUM CHLORIDE, 24 PERCENT W/V MEPEG 5000, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.pdbx_collection_date _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.details 1 2004-02-27 CCD 'MAR CCD 165 mm' 'RH MIRROR' 2 2004-03-03 'IMAGE PLATE' 'RIGAKU RAXIS IV' MULTILAYER # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_scattering_type 1 'SINGLE WAVELENGTH' 'DIAMOND 111 MIRROR' M 1 x-ray 2 'SINGLE WAVELENGTH' 'Osmic CMF12-38Cu6' M 1 x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97924 1.0 2 1.5418 1.0 # loop_ _diffrn_source.pdbx_wavelength_list _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength 0.97924 1 SYNCHROTRON 'APS BEAMLINE 32-ID' APS 32-ID ? 1.5418 2 'ROTATING ANODE' 'RIGAKU RU200' ? ? ? # _reflns.entry_id 1VM9 _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.48 _reflns.number_obs 16626 _reflns.percent_possible_obs 99.900 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_chi_squared 0.899 _reflns.pdbx_redundancy 13.6 _reflns.pdbx_netI_over_sigmaI 32.5 _reflns.number_all ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_low _reflns_shell.d_res_high _reflns_shell.number_measured_all _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_chi_squared _reflns_shell.number_unique_all _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.53 1.48 1621 99.800 0.277 0.599 ? ? 7.75 11.8 ? ? ? ? 1 1.59 1.53 1635 99.600 0.21 0.627 ? ? 7.75 11.8 ? ? ? ? 2 1.67 1.59 1640 99.800 0.165 0.694 ? ? 7.75 11.8 ? ? ? ? 3 1.75 1.67 1623 99.900 0.121 0.768 ? ? 7.75 11.8 ? ? ? ? 4 1.86 1.75 1658 100.000 0.091 0.832 ? ? 7.75 11.8 ? ? ? ? 5 2.01 1.86 1661 100.000 0.07 0.991 ? ? 7.75 11.8 ? ? ? ? 6 2.21 2.01 1652 100.000 0.058 1.056 ? ? 7.75 11.8 ? ? ? ? 7 2.53 2.21 1662 100.000 0.051 1.241 ? ? 7.75 11.8 ? ? ? ? 8 3.19 2.53 1697 100.000 0.045 0.989 ? ? 7.75 11.8 ? ? ? ? 9 50.00 3.19 1777 99.800 0.045 1.054 ? ? 7.75 11.8 ? ? ? ? 10 # _refine.entry_id 1VM9 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.B_iso_mean 14.035 _refine.aniso_B[1][1] 0.288 _refine.aniso_B[2][2] 0.692 _refine.aniso_B[3][3] -0.980 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'BABINET MODEL PLUS MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_d_res_high 1.480 _refine.ls_d_res_low 33.925 _refine.ls_number_reflns_R_free 838 _refine.ls_R_factor_obs 0.15586 _refine.ls_R_factor_R_work 0.1548 _refine.ls_R_factor_R_free 0.1759 _refine.ls_R_factor_all 0.156 _refine.ls_wR_factor_R_work 0.156 _refine.ls_wR_factor_R_free 0.180 _refine.ls_percent_reflns_R_free 5.048 _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.correlation_coeff_Fo_to_Fc_free 0.962 _refine.pdbx_overall_ESU_R 0.068 _refine.pdbx_overall_ESU_R_Free 0.067 _refine.overall_SU_ML 0.041 _refine.overall_SU_B 1.070 _refine.ls_percent_reflns_obs 99.660 _refine.ls_number_reflns_obs 15761 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_method_to_determine_struct SAD _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 845 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 996 _refine_hist.d_res_high 1.480 _refine_hist.d_res_low 33.925 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 878 0.020 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 747 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1188 2.427 1.954 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1759 0.995 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 109 6.121 5.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 131 0.118 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 974 0.014 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 157 0.022 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 164 0.194 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 860 0.255 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 420 0.178 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 496 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 89 0.236 0.200 ? 'X-RAY DIFFRACTION' ? 'Metal-ion: refined atoms' 1 0.074 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 9 0.173 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 40 0.272 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 16 0.257 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 542 1.683 2.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 224 0.357 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 877 2.884 4.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_other 742 1.399 4.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 336 4.240 6.000 ? 'X-RAY DIFFRACTION' ? r_scbond_other 523 0.975 6.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 308 6.608 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_other 1017 2.973 8.000 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.percent_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 1.5187 1.480 1199 1089 0.196 66 0.213 20 . . . . . . 'X-RAY DIFFRACTION' 1.5602 1.519 1200 1135 0.21 60 0.271 20 . . . . . . 'X-RAY DIFFRACTION' 1.6053 1.560 1128 1084 0.198 42 0.197 20 . . . . . . 'X-RAY DIFFRACTION' 1.6546 1.605 1118 1051 0.184 64 0.17 20 . . . . . . 'X-RAY DIFFRACTION' 1.7088 1.655 1103 1060 0.175 43 0.193 20 . . . . . . 'X-RAY DIFFRACTION' 1.7686 1.709 1036 979 0.157 56 0.188 20 . . . . . . 'X-RAY DIFFRACTION' 1.8351 1.769 1014 973 0.165 41 0.191 20 . . . . . . 'X-RAY DIFFRACTION' 1.9098 1.835 989 927 0.159 62 0.151 20 . . . . . . 'X-RAY DIFFRACTION' 1.9945 1.910 926 883 0.164 43 0.225 20 . . . . . . 'X-RAY DIFFRACTION' 2.0915 1.994 895 847 0.17 48 0.176 20 . . . . . . 'X-RAY DIFFRACTION' 2.2041 2.091 871 814 0.156 57 0.164 20 . . . . . . 'X-RAY DIFFRACTION' 2.3372 2.204 811 773 0.144 38 0.202 20 . . . . . . 'X-RAY DIFFRACTION' 2.4977 2.337 773 737 0.134 36 0.163 20 . . . . . . 'X-RAY DIFFRACTION' 2.6966 2.498 703 663 0.15 40 0.2 20 . . . . . . 'X-RAY DIFFRACTION' 2.9522 2.697 675 647 0.159 28 0.146 20 . . . . . . 'X-RAY DIFFRACTION' 3.2975 2.952 601 568 0.139 33 0.15 20 . . . . . . 'X-RAY DIFFRACTION' 3.8016 3.297 557 528 0.134 29 0.144 20 . . . . . . 'X-RAY DIFFRACTION' 4.6415 3.802 448 432 0.124 16 0.169 20 . . . . . . 'X-RAY DIFFRACTION' 6.5035 4.641 378 353 0.139 25 0.178 20 . . . . . . 'X-RAY DIFFRACTION' 33.9250 6.503 231 218 0.204 11 0.188 20 . . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 1VM9 _struct.title ;The X-ray Structure of the cys84ala cys85ala double mutant of the [2Fe-2S] Ferredoxin subunit of Toluene-4-Monooxygenase from Pseudomonas Mendocina KR1 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VM9 _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text ;STRUCTURAL GENOMICS, CESG, PROTEIN STRUCTURE INITIATIVE, PSI, FERREDOXIN, FES, [2FE-2S] CLUSTER, RIESKE PROTEIN, TOLUENE-4-MONOOXYGENASE SUBUNIT, Center for Eukaryotic Structural Genomics, ELECTRON TRANSPORT ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TMOC_PSEME _struct_ref.pdbx_db_accession Q00458 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINP DDCCLAEYPVEVKGDDIYVSTKGILPNKAHS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VM9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 111 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q00458 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 111 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 112 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VM9 ALA A 83 ? UNP Q00458 CYS 83 'engineered mutation' 84 1 1 1VM9 ALA A 84 ? UNP Q00458 CYS 84 'engineered mutation' 85 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ;The asymmetric unit contains a monomer with no higher oligomeric state apparent from symmetry. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 9 ? ILE A 11 ? ASP A 10 ILE A 12 5 ? 3 HELX_P HELX_P2 2 LEU A 50 ? GLY A 54 ? LEU A 51 GLY A 55 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 44 SG ? ? ? 1_555 D FES . FE1 ? ? A CYS 45 A FES 900 1_555 ? ? ? ? ? ? ? 2.272 ? ? metalc2 metalc ? ? A HIS 46 ND1 ? ? ? 1_555 D FES . FE2 ? ? A HIS 47 A FES 900 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc3 metalc ? ? A SER 52 O ? ? ? 1_555 B MG . MG ? ? A SER 53 A MG 901 1_555 ? ? ? ? ? ? ? 2.112 ? ? metalc4 metalc ? ? A CYS 63 SG ? ? ? 1_555 D FES . FE1 ? ? A CYS 64 A FES 900 1_555 ? ? ? ? ? ? ? 2.331 ? ? metalc5 metalc ? ? A HIS 66 ND1 ? ? ? 1_555 D FES . FE2 ? ? A HIS 67 A FES 900 1_555 ? ? ? ? ? ? ? 2.074 ? ? metalc6 metalc ? ? A ASP 95 OD2 ? ? ? 1_555 C MG . MG ? ? A ASP 96 A MG 902 1_555 ? ? ? ? ? ? ? 2.130 ? ? metalc7 metalc ? ? A ASP 96 OD1 ? ? ? 1_555 C MG . MG ? ? A ASP 97 A MG 902 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc8 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 901 A HOH 903 1_555 ? ? ? ? ? ? ? 2.408 ? ? metalc9 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 901 A HOH 904 1_555 ? ? ? ? ? ? ? 2.229 ? ? metalc10 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 901 A HOH 905 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc11 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 901 A HOH 906 1_555 ? ? ? ? ? ? ? 2.122 ? ? metalc12 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 901 A HOH 907 1_555 ? ? ? ? ? ? ? 2.110 ? ? metalc13 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 902 A HOH 908 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc14 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 902 A HOH 909 1_555 ? ? ? ? ? ? ? 2.021 ? ? metalc15 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 902 A HOH 910 1_555 ? ? ? ? ? ? ? 1.915 ? ? metalc16 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 902 A HOH 911 1_555 ? ? ? ? ? ? ? 2.146 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 44 ? A CYS 45 ? 1_555 FE1 ? D FES . ? A FES 900 ? 1_555 S1 ? D FES . ? A FES 900 ? 1_555 110.9 ? 2 SG ? A CYS 44 ? A CYS 45 ? 1_555 FE1 ? D FES . ? A FES 900 ? 1_555 S2 ? D FES . ? A FES 900 ? 1_555 110.3 ? 3 S1 ? D FES . ? A FES 900 ? 1_555 FE1 ? D FES . ? A FES 900 ? 1_555 S2 ? D FES . ? A FES 900 ? 1_555 105.8 ? 4 SG ? A CYS 44 ? A CYS 45 ? 1_555 FE1 ? D FES . ? A FES 900 ? 1_555 SG ? A CYS 63 ? A CYS 64 ? 1_555 107.5 ? 5 S1 ? D FES . ? A FES 900 ? 1_555 FE1 ? D FES . ? A FES 900 ? 1_555 SG ? A CYS 63 ? A CYS 64 ? 1_555 111.7 ? 6 S2 ? D FES . ? A FES 900 ? 1_555 FE1 ? D FES . ? A FES 900 ? 1_555 SG ? A CYS 63 ? A CYS 64 ? 1_555 110.7 ? 7 ND1 ? A HIS 46 ? A HIS 47 ? 1_555 FE2 ? D FES . ? A FES 900 ? 1_555 S1 ? D FES . ? A FES 900 ? 1_555 113.0 ? 8 ND1 ? A HIS 46 ? A HIS 47 ? 1_555 FE2 ? D FES . ? A FES 900 ? 1_555 S2 ? D FES . ? A FES 900 ? 1_555 117.4 ? 9 S1 ? D FES . ? A FES 900 ? 1_555 FE2 ? D FES . ? A FES 900 ? 1_555 S2 ? D FES . ? A FES 900 ? 1_555 104.0 ? 10 ND1 ? A HIS 46 ? A HIS 47 ? 1_555 FE2 ? D FES . ? A FES 900 ? 1_555 ND1 ? A HIS 66 ? A HIS 67 ? 1_555 86.3 ? 11 S1 ? D FES . ? A FES 900 ? 1_555 FE2 ? D FES . ? A FES 900 ? 1_555 ND1 ? A HIS 66 ? A HIS 67 ? 1_555 116.7 ? 12 S2 ? D FES . ? A FES 900 ? 1_555 FE2 ? D FES . ? A FES 900 ? 1_555 ND1 ? A HIS 66 ? A HIS 67 ? 1_555 119.5 ? 13 O ? A SER 52 ? A SER 53 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? H HOH . ? A HOH 903 ? 1_555 81.5 ? 14 O ? A SER 52 ? A SER 53 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? H HOH . ? A HOH 904 ? 1_555 165.2 ? 15 O ? H HOH . ? A HOH 903 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? H HOH . ? A HOH 904 ? 1_555 86.8 ? 16 O ? A SER 52 ? A SER 53 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? H HOH . ? A HOH 905 ? 1_555 93.6 ? 17 O ? H HOH . ? A HOH 903 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? H HOH . ? A HOH 905 ? 1_555 87.2 ? 18 O ? H HOH . ? A HOH 904 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? H HOH . ? A HOH 905 ? 1_555 94.8 ? 19 O ? A SER 52 ? A SER 53 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? H HOH . ? A HOH 906 ? 1_555 104.2 ? 20 O ? H HOH . ? A HOH 903 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? H HOH . ? A HOH 906 ? 1_555 171.3 ? 21 O ? H HOH . ? A HOH 904 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? H HOH . ? A HOH 906 ? 1_555 88.6 ? 22 O ? H HOH . ? A HOH 905 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? H HOH . ? A HOH 906 ? 1_555 85.9 ? 23 O ? A SER 52 ? A SER 53 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? H HOH . ? A HOH 907 ? 1_555 85.3 ? 24 O ? H HOH . ? A HOH 903 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? H HOH . ? A HOH 907 ? 1_555 94.1 ? 25 O ? H HOH . ? A HOH 904 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? H HOH . ? A HOH 907 ? 1_555 86.6 ? 26 O ? H HOH . ? A HOH 905 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? H HOH . ? A HOH 907 ? 1_555 178.2 ? 27 O ? H HOH . ? A HOH 906 ? 1_555 MG ? B MG . ? A MG 901 ? 1_555 O ? H HOH . ? A HOH 907 ? 1_555 93.0 ? 28 OD2 ? A ASP 95 ? A ASP 96 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 OD1 ? A ASP 96 ? A ASP 97 ? 1_555 91.0 ? 29 OD2 ? A ASP 95 ? A ASP 96 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? H HOH . ? A HOH 908 ? 1_555 95.3 ? 30 OD1 ? A ASP 96 ? A ASP 97 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? H HOH . ? A HOH 908 ? 1_555 88.5 ? 31 OD2 ? A ASP 95 ? A ASP 96 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? H HOH . ? A HOH 909 ? 1_555 78.4 ? 32 OD1 ? A ASP 96 ? A ASP 97 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? H HOH . ? A HOH 909 ? 1_555 91.9 ? 33 O ? H HOH . ? A HOH 908 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? H HOH . ? A HOH 909 ? 1_555 173.7 ? 34 OD2 ? A ASP 95 ? A ASP 96 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? H HOH . ? A HOH 910 ? 1_555 171.6 ? 35 OD1 ? A ASP 96 ? A ASP 97 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? H HOH . ? A HOH 910 ? 1_555 91.6 ? 36 O ? H HOH . ? A HOH 908 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? H HOH . ? A HOH 910 ? 1_555 92.8 ? 37 O ? H HOH . ? A HOH 909 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? H HOH . ? A HOH 910 ? 1_555 93.5 ? 38 OD2 ? A ASP 95 ? A ASP 96 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? H HOH . ? A HOH 911 ? 1_555 85.8 ? 39 OD1 ? A ASP 96 ? A ASP 97 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? H HOH . ? A HOH 911 ? 1_555 176.7 ? 40 O ? H HOH . ? A HOH 908 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? H HOH . ? A HOH 911 ? 1_555 91.3 ? 41 O ? H HOH . ? A HOH 909 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? H HOH . ? A HOH 911 ? 1_555 87.9 ? 42 O ? H HOH . ? A HOH 910 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? H HOH . ? A HOH 911 ? 1_555 91.7 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 79 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 80 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 80 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 81 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.99 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 3 ? SER A 7 ? GLU A 4 SER A 8 A 2 ASP A 96 ? VAL A 99 ? ASP A 97 VAL A 100 A 3 VAL A 90 ? LYS A 93 ? VAL A 91 LYS A 94 B 1 GLU A 15 ? GLU A 20 ? GLU A 16 GLU A 21 B 2 GLU A 26 ? SER A 32 ? GLU A 27 SER A 33 B 3 GLY A 36 ? GLN A 41 ? GLY A 37 GLN A 42 B 4 GLU A 87 ? TYR A 88 ? GLU A 88 TYR A 89 C 1 SER A 55 ? GLU A 57 ? SER A 56 GLU A 58 C 2 VAL A 60 ? THR A 62 ? VAL A 61 THR A 63 C 3 THR A 69 ? ASN A 71 ? THR A 70 ASN A 72 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 5 ? N ILE A 6 O ILE A 97 ? O ILE A 98 A 2 3 O TYR A 98 ? O TYR A 99 N GLU A 91 ? N GLU A 92 B 1 2 N GLU A 17 ? N GLU A 18 O ILE A 29 ? O ILE A 30 B 2 3 N VAL A 30 ? N VAL A 31 O LYS A 38 ? O LYS A 39 B 3 4 N ALA A 39 ? N ALA A 40 O TYR A 88 ? O TYR A 89 C 1 2 N SER A 55 ? N SER A 56 O THR A 62 ? O THR A 63 C 2 3 N ILE A 61 ? N ILE A 62 O PHE A 70 ? O PHE A 71 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 901 ? 6 'BINDING SITE FOR RESIDUE MG A 901' AC2 Software A MG 902 ? 6 'BINDING SITE FOR RESIDUE MG A 902' AC3 Software A FES 900 ? 6 'BINDING SITE FOR RESIDUE FES A 900' AC4 Software A EDO 801 ? 4 'BINDING SITE FOR RESIDUE EDO A 801' AC5 Software A EDO 802 ? 3 'BINDING SITE FOR RESIDUE EDO A 802' AC6 Software A EDO 803 ? 6 'BINDING SITE FOR RESIDUE EDO A 803' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 SER A 52 ? SER A 53 . ? 1_555 ? 2 AC1 6 HOH H . ? HOH A 903 . ? 1_555 ? 3 AC1 6 HOH H . ? HOH A 904 . ? 1_555 ? 4 AC1 6 HOH H . ? HOH A 905 . ? 1_555 ? 5 AC1 6 HOH H . ? HOH A 906 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH A 907 . ? 1_555 ? 7 AC2 6 ASP A 95 ? ASP A 96 . ? 1_555 ? 8 AC2 6 ASP A 96 ? ASP A 97 . ? 1_555 ? 9 AC2 6 HOH H . ? HOH A 908 . ? 1_555 ? 10 AC2 6 HOH H . ? HOH A 909 . ? 1_555 ? 11 AC2 6 HOH H . ? HOH A 910 . ? 1_555 ? 12 AC2 6 HOH H . ? HOH A 911 . ? 1_555 ? 13 AC3 6 CYS A 44 ? CYS A 45 . ? 1_555 ? 14 AC3 6 HIS A 46 ? HIS A 47 . ? 1_555 ? 15 AC3 6 GLN A 47 ? GLN A 48 . ? 1_555 ? 16 AC3 6 CYS A 63 ? CYS A 64 . ? 1_555 ? 17 AC3 6 HIS A 66 ? HIS A 67 . ? 1_555 ? 18 AC3 6 TRP A 68 ? TRP A 69 . ? 1_555 ? 19 AC4 4 SER A 55 ? SER A 56 . ? 1_555 ? 20 AC4 4 THR A 62 ? THR A 63 . ? 1_555 ? 21 AC4 4 ARG A 64 ? ARG A 65 . ? 1_555 ? 22 AC4 4 HOH H . ? HOH A 1006 . ? 1_555 ? 23 AC5 3 TRP A 68 ? TRP A 69 . ? 3_555 ? 24 AC5 3 PRO A 80 ? PRO A 81 . ? 1_555 ? 25 AC5 3 ASP A 82 ? ASP A 83 . ? 1_555 ? 26 AC6 6 VAL A 13 ? VAL A 14 . ? 1_555 ? 27 AC6 6 ASN A 31 ? ASN A 32 . ? 1_555 ? 28 AC6 6 SER A 32 ? SER A 33 . ? 1_555 ? 29 AC6 6 GLU A 33 ? GLU A 34 . ? 1_555 ? 30 AC6 6 GLY A 36 ? GLY A 37 . ? 1_555 ? 31 AC6 6 HOH H . ? HOH A 1016 . ? 4_566 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 930 ? ? O A HOH 1035 ? ? 2.08 2 1 O A HOH 920 ? ? O A HOH 1030 ? ? 2.08 3 1 OE1 A GLU 35 ? ? O A HOH 1035 ? ? 2.10 4 1 O A HOH 990 ? ? O A HOH 1033 ? ? 2.11 5 1 O A HOH 937 ? ? O A HOH 1024 ? ? 2.15 6 1 O A HOH 1002 ? ? O A HOH 1010 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 961 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 1035 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_545 _pdbx_validate_symm_contact.dist 2.12 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 97 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 97 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 97 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.58 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 6.28 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 7 ? ? -171.15 -178.42 2 1 ILE A 79 ? ? -102.85 -66.95 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Center for Eukaryotic Structural Genomics' _pdbx_SG_project.initial_of_center CESG # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.Cartn_x _pdbx_phasing_MAD_set_site.Cartn_y _pdbx_phasing_MAD_set_site.Cartn_z _pdbx_phasing_MAD_set_site.occupancy _pdbx_phasing_MAD_set_site.b_iso 1 FE 7.526 7.892 19.297 0.80 22.1 2 FE 8.851 9.296 21.233 1.06 34.3 # loop_ _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom 20.000 6.67 421 0.43 6.67 4.27 666 0.37 4.27 3.36 835 0.37 3.36 2.85 987 0.39 2.85 2.52 1091 0.36 2.52 2.29 1185 0.33 2.29 2.10 1275 0.26 2.10 1.96 1304 0.18 # _pdbx_phasing_dm.entry_id 1VM9 _pdbx_phasing_dm.fom_acentric 0.69 _pdbx_phasing_dm.fom_centric 0.66 _pdbx_phasing_dm.fom 0.68 _pdbx_phasing_dm.reflns_acentric 6735 _pdbx_phasing_dm.reflns_centric 1031 _pdbx_phasing_dm.reflns 7766 # loop_ _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 19.587 5.4 0.94 0.86 0.94 252 119 371 5.4 3.4 0.95 0.89 0.94 875 211 1086 3.4 2.7 0.88 0.80 0.87 1139 191 1330 2.7 2.4 0.76 0.61 0.74 1162 158 1320 2.4 2.0 0.59 0.46 0.58 2067 230 2297 2.0 1.9 0.36 0.29 0.35 1240 122 1362 # _phasing.method MAD # _phasing_MAD.entry_id 1VM9 _phasing_MAD.pdbx_d_res_high 1.900 _phasing_MAD.pdbx_d_res_low 20.000 _phasing_MAD.pdbx_reflns 7764 _phasing_MAD.pdbx_fom 0.32 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 111 ? A HIS 110 2 1 Y 1 A SER 112 ? A SER 111 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 FES FE1 FE N N 98 FES FE2 FE N N 99 FES S1 S N N 100 FES S2 S N N 101 GLN N N N N 102 GLN CA C N S 103 GLN C C N N 104 GLN O O N N 105 GLN CB C N N 106 GLN CG C N N 107 GLN CD C N N 108 GLN OE1 O N N 109 GLN NE2 N N N 110 GLN OXT O N N 111 GLN H H N N 112 GLN H2 H N N 113 GLN HA H N N 114 GLN HB2 H N N 115 GLN HB3 H N N 116 GLN HG2 H N N 117 GLN HG3 H N N 118 GLN HE21 H N N 119 GLN HE22 H N N 120 GLN HXT H N N 121 GLU N N N N 122 GLU CA C N S 123 GLU C C N N 124 GLU O O N N 125 GLU CB C N N 126 GLU CG C N N 127 GLU CD C N N 128 GLU OE1 O N N 129 GLU OE2 O N N 130 GLU OXT O N N 131 GLU H H N N 132 GLU H2 H N N 133 GLU HA H N N 134 GLU HB2 H N N 135 GLU HB3 H N N 136 GLU HG2 H N N 137 GLU HG3 H N N 138 GLU HE2 H N N 139 GLU HXT H N N 140 GLY N N N N 141 GLY CA C N N 142 GLY C C N N 143 GLY O O N N 144 GLY OXT O N N 145 GLY H H N N 146 GLY H2 H N N 147 GLY HA2 H N N 148 GLY HA3 H N N 149 GLY HXT H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 MG MG MG N N 264 PHE N N N N 265 PHE CA C N S 266 PHE C C N N 267 PHE O O N N 268 PHE CB C N N 269 PHE CG C Y N 270 PHE CD1 C Y N 271 PHE CD2 C Y N 272 PHE CE1 C Y N 273 PHE CE2 C Y N 274 PHE CZ C Y N 275 PHE OXT O N N 276 PHE H H N N 277 PHE H2 H N N 278 PHE HA H N N 279 PHE HB2 H N N 280 PHE HB3 H N N 281 PHE HD1 H N N 282 PHE HD2 H N N 283 PHE HE1 H N N 284 PHE HE2 H N N 285 PHE HZ H N N 286 PHE HXT H N N 287 PRO N N N N 288 PRO CA C N S 289 PRO C C N N 290 PRO O O N N 291 PRO CB C N N 292 PRO CG C N N 293 PRO CD C N N 294 PRO OXT O N N 295 PRO H H N N 296 PRO HA H N N 297 PRO HB2 H N N 298 PRO HB3 H N N 299 PRO HG2 H N N 300 PRO HG3 H N N 301 PRO HD2 H N N 302 PRO HD3 H N N 303 PRO HXT H N N 304 SER N N N N 305 SER CA C N S 306 SER C C N N 307 SER O O N N 308 SER CB C N N 309 SER OG O N N 310 SER OXT O N N 311 SER H H N N 312 SER H2 H N N 313 SER HA H N N 314 SER HB2 H N N 315 SER HB3 H N N 316 SER HG H N N 317 SER HXT H N N 318 THR N N N N 319 THR CA C N S 320 THR C C N N 321 THR O O N N 322 THR CB C N R 323 THR OG1 O N N 324 THR CG2 C N N 325 THR OXT O N N 326 THR H H N N 327 THR H2 H N N 328 THR HA H N N 329 THR HB H N N 330 THR HG1 H N N 331 THR HG21 H N N 332 THR HG22 H N N 333 THR HG23 H N N 334 THR HXT H N N 335 TRP N N N N 336 TRP CA C N S 337 TRP C C N N 338 TRP O O N N 339 TRP CB C N N 340 TRP CG C Y N 341 TRP CD1 C Y N 342 TRP CD2 C Y N 343 TRP NE1 N Y N 344 TRP CE2 C Y N 345 TRP CE3 C Y N 346 TRP CZ2 C Y N 347 TRP CZ3 C Y N 348 TRP CH2 C Y N 349 TRP OXT O N N 350 TRP H H N N 351 TRP H2 H N N 352 TRP HA H N N 353 TRP HB2 H N N 354 TRP HB3 H N N 355 TRP HD1 H N N 356 TRP HE1 H N N 357 TRP HE3 H N N 358 TRP HZ2 H N N 359 TRP HZ3 H N N 360 TRP HH2 H N N 361 TRP HXT H N N 362 TYR N N N N 363 TYR CA C N S 364 TYR C C N N 365 TYR O O N N 366 TYR CB C N N 367 TYR CG C Y N 368 TYR CD1 C Y N 369 TYR CD2 C Y N 370 TYR CE1 C Y N 371 TYR CE2 C Y N 372 TYR CZ C Y N 373 TYR OH O N N 374 TYR OXT O N N 375 TYR H H N N 376 TYR H2 H N N 377 TYR HA H N N 378 TYR HB2 H N N 379 TYR HB3 H N N 380 TYR HD1 H N N 381 TYR HD2 H N N 382 TYR HE1 H N N 383 TYR HE2 H N N 384 TYR HH H N N 385 TYR HXT H N N 386 VAL N N N N 387 VAL CA C N S 388 VAL C C N N 389 VAL O O N N 390 VAL CB C N N 391 VAL CG1 C N N 392 VAL CG2 C N N 393 VAL OXT O N N 394 VAL H H N N 395 VAL H2 H N N 396 VAL HA H N N 397 VAL HB H N N 398 VAL HG11 H N N 399 VAL HG12 H N N 400 VAL HG13 H N N 401 VAL HG21 H N N 402 VAL HG22 H N N 403 VAL HG23 H N N 404 VAL HXT H N N 405 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 FES FE1 S1 sing N N 92 FES FE1 S2 sing N N 93 FES FE2 S1 sing N N 94 FES FE2 S2 sing N N 95 GLN N CA sing N N 96 GLN N H sing N N 97 GLN N H2 sing N N 98 GLN CA C sing N N 99 GLN CA CB sing N N 100 GLN CA HA sing N N 101 GLN C O doub N N 102 GLN C OXT sing N N 103 GLN CB CG sing N N 104 GLN CB HB2 sing N N 105 GLN CB HB3 sing N N 106 GLN CG CD sing N N 107 GLN CG HG2 sing N N 108 GLN CG HG3 sing N N 109 GLN CD OE1 doub N N 110 GLN CD NE2 sing N N 111 GLN NE2 HE21 sing N N 112 GLN NE2 HE22 sing N N 113 GLN OXT HXT sing N N 114 GLU N CA sing N N 115 GLU N H sing N N 116 GLU N H2 sing N N 117 GLU CA C sing N N 118 GLU CA CB sing N N 119 GLU CA HA sing N N 120 GLU C O doub N N 121 GLU C OXT sing N N 122 GLU CB CG sing N N 123 GLU CB HB2 sing N N 124 GLU CB HB3 sing N N 125 GLU CG CD sing N N 126 GLU CG HG2 sing N N 127 GLU CG HG3 sing N N 128 GLU CD OE1 doub N N 129 GLU CD OE2 sing N N 130 GLU OE2 HE2 sing N N 131 GLU OXT HXT sing N N 132 GLY N CA sing N N 133 GLY N H sing N N 134 GLY N H2 sing N N 135 GLY CA C sing N N 136 GLY CA HA2 sing N N 137 GLY CA HA3 sing N N 138 GLY C O doub N N 139 GLY C OXT sing N N 140 GLY OXT HXT sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TRP N CA sing N N 319 TRP N H sing N N 320 TRP N H2 sing N N 321 TRP CA C sing N N 322 TRP CA CB sing N N 323 TRP CA HA sing N N 324 TRP C O doub N N 325 TRP C OXT sing N N 326 TRP CB CG sing N N 327 TRP CB HB2 sing N N 328 TRP CB HB3 sing N N 329 TRP CG CD1 doub Y N 330 TRP CG CD2 sing Y N 331 TRP CD1 NE1 sing Y N 332 TRP CD1 HD1 sing N N 333 TRP CD2 CE2 doub Y N 334 TRP CD2 CE3 sing Y N 335 TRP NE1 CE2 sing Y N 336 TRP NE1 HE1 sing N N 337 TRP CE2 CZ2 sing Y N 338 TRP CE3 CZ3 doub Y N 339 TRP CE3 HE3 sing N N 340 TRP CZ2 CH2 doub Y N 341 TRP CZ2 HZ2 sing N N 342 TRP CZ3 CH2 sing Y N 343 TRP CZ3 HZ3 sing N N 344 TRP CH2 HH2 sing N N 345 TRP OXT HXT sing N N 346 TYR N CA sing N N 347 TYR N H sing N N 348 TYR N H2 sing N N 349 TYR CA C sing N N 350 TYR CA CB sing N N 351 TYR CA HA sing N N 352 TYR C O doub N N 353 TYR C OXT sing N N 354 TYR CB CG sing N N 355 TYR CB HB2 sing N N 356 TYR CB HB3 sing N N 357 TYR CG CD1 doub Y N 358 TYR CG CD2 sing Y N 359 TYR CD1 CE1 sing Y N 360 TYR CD1 HD1 sing N N 361 TYR CD2 CE2 doub Y N 362 TYR CD2 HD2 sing N N 363 TYR CE1 CZ doub Y N 364 TYR CE1 HE1 sing N N 365 TYR CE2 CZ sing Y N 366 TYR CE2 HE2 sing N N 367 TYR CZ OH sing N N 368 TYR OH HH sing N N 369 TYR OXT HXT sing N N 370 VAL N CA sing N N 371 VAL N H sing N N 372 VAL N H2 sing N N 373 VAL CA C sing N N 374 VAL CA CB sing N N 375 VAL CA HA sing N N 376 VAL C O doub N N 377 VAL C OXT sing N N 378 VAL CB CG1 sing N N 379 VAL CB CG2 sing N N 380 VAL CB HB sing N N 381 VAL CG1 HG11 sing N N 382 VAL CG1 HG12 sing N N 383 VAL CG1 HG13 sing N N 384 VAL CG2 HG21 sing N N 385 VAL CG2 HG22 sing N N 386 VAL CG2 HG23 sing N N 387 VAL OXT HXT sing N N 388 # _atom_sites.entry_id 1VM9 _atom_sites.fract_transf_matrix[1][1] 0.022467 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019084 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011968 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE MG N O S # loop_