HEADER HYDROLASE 24-SEP-04 1VMG TITLE CRYSTAL STRUCTURE OF MAZG NUCLEOTIDE PYROPHOSPHOHYDROLASE (13816655) TITLE 2 FROM SULFOLOBUS SOLFATARICUS AT 1.46 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN SSO3215; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS 13816655, MAZG NUCLEOTIDE PYROPHOSPHOHYDROLASE, STRUCTURAL GENOMICS, KEYWDS 2 JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 13-NOV-24 1VMG 1 REMARK REVDAT 6 27-DEC-23 1VMG 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 1VMG 1 VERSN REVDAT 4 24-FEB-09 1VMG 1 VERSN REVDAT 3 28-MAR-06 1VMG 1 JRNL REVDAT 2 18-JAN-05 1VMG 1 AUTHOR KEYWDS REMARK REVDAT 1 05-OCT-04 1VMG 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF MAZG NUCLEOTIDE PYROPHOSPHOHYDROLASE JRNL TITL 2 (13816655) FROM SULFOLOBUS SOLFATARICUS AT 1.46 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC (5.2.0005) REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 24059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1288 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 656 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 35.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 655 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.043 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.041 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.453 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 715 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 695 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 971 ; 1.235 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1625 ; 0.800 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 82 ; 4.933 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 33 ;35.014 ;27.273 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 152 ;12.092 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ;14.745 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 125 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 741 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 118 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 171 ; 0.253 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 624 ; 0.149 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 360 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 387 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 77 ; 0.381 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.204 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.115 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.133 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 444 ; 1.903 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 171 ; 0.318 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 708 ; 2.371 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 320 ; 4.279 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 263 ; 5.367 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): 68.5390 7.8450 3.9150 REMARK 3 T TENSOR REMARK 3 T11: -0.0081 T22: -0.0199 REMARK 3 T33: -0.0211 T12: 0.0004 REMARK 3 T13: -0.0002 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.4738 L22: 0.7849 REMARK 3 L33: 0.5075 L12: -0.2119 REMARK 3 L13: 0.0800 L23: 0.3208 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: 0.0030 S13: -0.0257 REMARK 3 S21: 0.0682 S22: -0.0261 S23: 0.0546 REMARK 3 S31: -0.0086 S32: -0.0386 S33: 0.0216 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS 2. AN UNKNOWN ENTITY BETWEEN TYR 16 AND TRP 61 REMARK 3 WAS AS UNK, UNKNOWN LIGAND. THE DENSITY LOOKS SIMILAR TO A REMARK 3 GUANINE BASE. 3. THERE ARE ADDITIONAL UNEXPLAINED DENSITIES NEAR REMARK 3 ARG 23, TRP 31, TRP 61. IT MAY BE RELATED TO UNK, HOWEVER, REMARK 3 DENSITY IS TOO FRAGMENTED TO IDENTIFY OR MODEL. 4. A LI ION WAS REMARK 3 TENATIVELY MODELLED ACCORDING TO THE ENVIROMENT. AND ITS REMARK 3 PRESENCE IN THE CRYSTALLIZATION BUFFER. REMARK 4 REMARK 4 1VMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000002012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979834 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25360 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 25.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSHARP, SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M LI2SO4, 0.1M HEPES PH 7.5, VAPOR REMARK 280 DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.87450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 39.87450 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.95450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.87450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.97725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.87450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.93175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.87450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.93175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.87450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.97725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 39.87450 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 39.87450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.95450 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 39.87450 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 39.87450 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.95450 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 39.87450 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 71.93175 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 39.87450 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 23.97725 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 39.87450 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 23.97725 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 39.87450 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 71.93175 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 39.87450 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 39.87450 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 47.95450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 79.74900 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 79.74900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 13600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -126.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 79.74900 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 79.74900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 159.49800 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 79.74900 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 -79.74900 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 92 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CG CE REMARK 470 GLU A 7 CD OE1 OE2 REMARK 470 GLU A 18 CD OE1 OE2 REMARK 470 LYS A 19 CD CE NZ REMARK 470 GLN A 22 CD OE1 NE2 REMARK 470 LYS A 82 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 129 O HOH A 173 2.10 REMARK 500 OE1 GLU A 34 O HOH A 145 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 LI A 84 LI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 OE1 REMARK 620 2 GLU A 54 OE1 103.2 REMARK 620 3 ASP A 57 OD2 100.8 101.7 REMARK 620 4 HOH A 108 O 121.1 117.2 110.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LI A 84 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 85 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 358109 RELATED DB: TARGETDB DBREF 1VMG A -11 83 UNP Q97U11 Q97U11_SULSO 1 83 SEQADV 1VMG GLY A -10 UNP Q97U11 CLONING ARTIFACT SEQADV 1VMG SER A -9 UNP Q97U11 CLONING ARTIFACT SEQADV 1VMG ASP A -8 UNP Q97U11 CLONING ARTIFACT SEQADV 1VMG LYS A -7 UNP Q97U11 CLONING ARTIFACT SEQADV 1VMG ILE A -6 UNP Q97U11 CLONING ARTIFACT SEQADV 1VMG HIS A -5 UNP Q97U11 CLONING ARTIFACT SEQADV 1VMG HIS A -4 UNP Q97U11 CLONING ARTIFACT SEQADV 1VMG HIS A -3 UNP Q97U11 CLONING ARTIFACT SEQADV 1VMG HIS A -2 UNP Q97U11 CLONING ARTIFACT SEQADV 1VMG HIS A -1 UNP Q97U11 CLONING ARTIFACT SEQADV 1VMG HIS A 0 UNP Q97U11 CLONING ARTIFACT SEQADV 1VMG MSE A 1 UNP Q97U11 MET 1 MODIFIED RESIDUE SEQADV 1VMG MSE A 12 UNP Q97U11 MET 12 MODIFIED RESIDUE SEQADV 1VMG MSE A 15 UNP Q97U11 MET 15 MODIFIED RESIDUE SEQRES 1 A 95 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 95 ASP LEU GLU LEU LYS GLU LEU GLN SER LYS MSE LYS GLU SEQRES 3 A 95 MSE TYR PHE GLU LYS ASP SER GLN ARG GLY ILE TYR ALA SEQRES 4 A 95 THR PHE THR TRP LEU VAL GLU GLU VAL GLY GLU LEU ALA SEQRES 5 A 95 GLU ALA LEU LEU SER ASN ASN LEU ASP SER ILE GLN GLU SEQRES 6 A 95 GLU LEU ALA ASP VAL ILE ALA TRP THR VAL SER ILE ALA SEQRES 7 A 95 ASN LEU GLU GLY ILE ASP ILE GLU GLU ALA LEU LYS LYS SEQRES 8 A 95 LYS TYR LYS LEU MODRES 1VMG MSE A 1 MET SELENOMETHIONINE MODRES 1VMG MSE A 12 MET SELENOMETHIONINE MODRES 1VMG MSE A 15 MET SELENOMETHIONINE HET MSE A 1 7 HET MSE A 12 16 HET MSE A 15 8 HET LI A 84 1 HET UNL A 85 9 HETNAM MSE SELENOMETHIONINE HETNAM LI LITHIUM ION HETNAM UNL UNKNOWN LIGAND FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 LI LI 1+ FORMUL 4 HOH *106(H2 O) HELIX 1 1 GLU A 4 GLY A 24 1 21 HELIX 2 2 GLY A 24 ASN A 46 1 23 HELIX 3 3 ASN A 47 GLY A 70 1 24 HELIX 4 4 ASP A 72 TYR A 81 1 10 LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK C LYS A 11 N MSE A 12 1555 1555 1.33 LINK C MSE A 12 N LYS A 13 1555 1555 1.33 LINK C GLU A 14 N MSE A 15 1555 1555 1.32 LINK C MSE A 15 N TYR A 16 1555 1555 1.33 LINK OE1 GLU A 35 LI LI A 84 1555 1555 1.90 LINK OE1 GLU A 54 LI LI A 84 1555 1555 1.99 LINK OD2 ASP A 57 LI LI A 84 1555 1555 2.12 LINK LI LI A 84 O HOH A 108 1555 1555 1.67 SITE 1 AC1 4 GLU A 35 GLU A 54 ASP A 57 HOH A 108 SITE 1 AC2 9 TYR A 16 ASP A 20 ARG A 23 ALA A 60 SITE 2 AC2 9 TRP A 61 SER A 64 TYR A 81 HOH A 88 SITE 3 AC2 9 HOH A 175 CRYST1 79.749 79.749 95.909 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012539 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012539 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010427 0.00000 HETATM 1 N MSE A 1 51.103 18.561 -0.055 1.00 36.76 N HETATM 2 CA MSE A 1 51.218 17.435 -1.041 1.00 35.74 C HETATM 3 C MSE A 1 52.656 17.161 -1.488 1.00 31.63 C HETATM 4 O MSE A 1 53.031 16.002 -1.662 1.00 35.94 O HETATM 5 CB MSE A 1 50.367 17.728 -2.274 1.00 37.49 C HETATM 6 SE AMSE A 1 48.286 15.116 -1.967 0.35 77.58 SE HETATM 7 SE BMSE A 1 50.168 17.638 -5.460 0.65 79.66 SE