HEADER TRANSFERASE 28-SEP-04 1VMI TITLE CRYSTAL STRUCTURE OF PUTATIVE PHOSPHATE ACETYLTRANSFERASE TITLE 2 (NP_416953.1) FROM ESCHERICHIA COLI K12 AT 2.32 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHOSPHATE ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.1.8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: EUTD, EUTI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS NP_416953.1, PUTATIVE PHOSPHATE ACETYLTRANSFERASE, STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, JOINT CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 27-DEC-23 1VMI 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 1VMI 1 VERSN REVDAT 4 24-FEB-09 1VMI 1 VERSN REVDAT 3 28-MAR-06 1VMI 1 JRNL REVDAT 2 18-JAN-05 1VMI 1 AUTHOR KEYWDS REMARK REVDAT 1 12-OCT-04 1VMI 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE PHOSPHATE ACETYLTRANSFERASE JRNL TITL 2 (NP_416953.1) FROM ESCHERICHIA COLI K12 AT 2.32 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1085 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1441 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2397 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 60.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.08000 REMARK 3 B22 (A**2) : 1.08000 REMARK 3 B33 (A**2) : -1.62000 REMARK 3 B12 (A**2) : 0.54000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.229 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.070 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2454 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2344 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3341 ; 1.533 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5414 ; 0.855 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 8.734 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;36.585 ;23.708 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 377 ;16.011 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;20.243 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2762 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 461 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 519 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2293 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1215 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1537 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 81 ; 0.127 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.227 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.272 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.174 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1697 ; 0.921 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 659 ; 0.167 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2621 ; 1.170 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 852 ; 2.477 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 720 ; 3.609 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -6 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1347 39.9689 12.6246 REMARK 3 T TENSOR REMARK 3 T11: -0.0743 T22: -0.1729 REMARK 3 T33: -0.1033 T12: -0.0041 REMARK 3 T13: 0.0305 T23: -0.0557 REMARK 3 L TENSOR REMARK 3 L11: 3.3765 L22: 3.5750 REMARK 3 L33: 3.0097 L12: 2.4544 REMARK 3 L13: 0.5061 L23: 0.5840 REMARK 3 S TENSOR REMARK 3 S11: 0.0709 S12: 0.1252 S13: 0.2968 REMARK 3 S21: -0.1040 S22: -0.0991 S23: 0.1354 REMARK 3 S31: -0.5429 S32: 0.1705 S33: 0.0281 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2537 20.2621 10.5063 REMARK 3 T TENSOR REMARK 3 T11: -0.0874 T22: -0.0932 REMARK 3 T33: 0.0479 T12: 0.0338 REMARK 3 T13: 0.0010 T23: -0.0916 REMARK 3 L TENSOR REMARK 3 L11: 3.2030 L22: 2.3600 REMARK 3 L33: 4.0056 L12: 0.6962 REMARK 3 L13: 0.6492 L23: 3.0663 REMARK 3 S TENSOR REMARK 3 S11: 0.0836 S12: 0.2577 S13: -0.5742 REMARK 3 S21: -0.0516 S22: 0.1969 S23: -0.3546 REMARK 3 S31: 0.2997 S32: 0.2087 S33: -0.2804 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 148 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7686 29.9272 31.9990 REMARK 3 T TENSOR REMARK 3 T11: -0.0727 T22: -0.0597 REMARK 3 T33: -0.1370 T12: 0.0197 REMARK 3 T13: -0.0796 T23: -0.0273 REMARK 3 L TENSOR REMARK 3 L11: 3.7033 L22: 9.4125 REMARK 3 L33: 5.2547 L12: 1.7510 REMARK 3 L13: -0.4278 L23: -1.1325 REMARK 3 S TENSOR REMARK 3 S11: 0.0422 S12: 0.2541 S13: 0.1970 REMARK 3 S21: 0.0692 S22: -0.0037 S23: -0.1295 REMARK 3 S31: -0.1149 S32: 0.3983 S33: -0.0386 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 196 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1283 26.7679 42.8490 REMARK 3 T TENSOR REMARK 3 T11: -0.0415 T22: 0.2223 REMARK 3 T33: 0.0415 T12: 0.0923 REMARK 3 T13: -0.1178 T23: -0.0496 REMARK 3 L TENSOR REMARK 3 L11: 3.2623 L22: 2.2061 REMARK 3 L33: 3.7608 L12: 0.6623 REMARK 3 L13: -0.4856 L23: 1.5930 REMARK 3 S TENSOR REMARK 3 S11: -0.0643 S12: 0.0014 S13: -0.0854 REMARK 3 S21: 0.0505 S22: 0.1969 S23: -0.5414 REMARK 3 S31: 0.2617 S32: 1.2273 S33: -0.1327 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 269 A 323 REMARK 3 ORIGIN FOR THE GROUP (A): -1.0139 33.8011 27.9864 REMARK 3 T TENSOR REMARK 3 T11: -0.0861 T22: -0.1175 REMARK 3 T33: -0.0758 T12: -0.0647 REMARK 3 T13: -0.0158 T23: -0.0605 REMARK 3 L TENSOR REMARK 3 L11: 0.8056 L22: 0.6815 REMARK 3 L33: 4.4008 L12: -0.6105 REMARK 3 L13: 1.4041 L23: -1.7179 REMARK 3 S TENSOR REMARK 3 S11: 0.0378 S12: 0.1490 S13: -0.0603 REMARK 3 S21: -0.0013 S22: 0.0567 S23: -0.1051 REMARK 3 S31: -0.1356 S32: 0.0271 S33: -0.0945 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VMI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000002014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-04; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS REMARK 200 BEAMLINE : 8.2.1; 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796; 0.9796, 0.9794, 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111); NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21138 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 28.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.55000 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSHARP, SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26M (NH4)2SO4, 0.2M NACL, 0.1M CHES REMARK 280 PH 9.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.75600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 87.75600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.75600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 87.75600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 87.75600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 87.75600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.75600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 361 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLN A 324 REMARK 465 THR A 325 REMARK 465 GLU A 326 REMARK 465 VAL A 327 REMARK 465 ASN A 328 REMARK 465 ARG A 329 REMARK 465 GLU A 330 REMARK 465 SER A 331 REMARK 465 SER A 332 REMARK 465 LEU A 333 REMARK 465 GLN A 334 REMARK 465 THR A 335 REMARK 465 LEU A 336 REMARK 465 VAL A 337 REMARK 465 GLU A 338 REMARK 465 GLY A 339 REMARK 465 LEU A 340 REMARK 465 CYS A 341 REMARK 465 GLY A 342 REMARK 465 ARG A 343 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 52 CZ NH1 NH2 REMARK 470 LEU A 56 CD1 CD2 REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 LYS A 91 CD CE NZ REMARK 470 ARG A 132 NE CZ NH1 NH2 REMARK 470 LYS A 145 CD CE NZ REMARK 470 TYR A 157 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 187 CD OE1 OE2 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 GLU A 227 CD OE1 OE2 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 GLN A 251 CD OE1 NE2 REMARK 470 ARG A 323 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 207 OE1 GLU A 237 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 77 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 77 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 158 143.14 161.11 REMARK 500 ASP A 166 101.16 -36.20 REMARK 500 SER A 168 -36.30 -138.37 REMARK 500 VAL A 169 -70.21 -103.01 REMARK 500 ASN A 207 -152.52 52.30 REMARK 500 GLU A 237 110.47 8.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 165 ASP A 166 -89.66 REMARK 500 GLY A 236 GLU A 237 -113.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 165 -11.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 344 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 358288 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 CLONING ARTIFACT: RESIDUE 1 OF THE GENE IS NOT INCLUDED IN THE REMARK 999 CONSTRUCT. THE CONSTRUCT HAS THE 13 AMINO ACID N-TERMINAL TAG REMARK 999 FOLLOWED BY RESIDUES 2-338 OF THE EC5317A GENE PRODUCT AND A REMARK 999 5 AMINO ACID C-TERMINAL TAG. DBREF 1VMI A 2 338 UNP P77218 EUTD_ECOLI 2 338 SEQADV 1VMI HIS A -12 UNP P77218 SEE REMARK 999 SEQADV 1VMI HIS A -11 UNP P77218 SEE REMARK 999 SEQADV 1VMI HIS A -10 UNP P77218 SEE REMARK 999 SEQADV 1VMI HIS A -9 UNP P77218 SEE REMARK 999 SEQADV 1VMI HIS A -8 UNP P77218 SEE REMARK 999 SEQADV 1VMI HIS A -7 UNP P77218 SEE REMARK 999 SEQADV 1VMI THR A -6 UNP P77218 SEE REMARK 999 SEQADV 1VMI ASP A -5 UNP P77218 SEE REMARK 999 SEQADV 1VMI PRO A -4 UNP P77218 SEE REMARK 999 SEQADV 1VMI ALA A -3 UNP P77218 SEE REMARK 999 SEQADV 1VMI LEU A -2 UNP P77218 SEE REMARK 999 SEQADV 1VMI ARG A -1 UNP P77218 SEE REMARK 999 SEQADV 1VMI ALA A 0 UNP P77218 SEE REMARK 999 SEQADV 1VMI MSE A 62 UNP P77218 MET 62 MODIFIED RESIDUE SEQADV 1VMI MSE A 76 UNP P77218 MET 76 MODIFIED RESIDUE SEQADV 1VMI MSE A 105 UNP P77218 MET 105 MODIFIED RESIDUE SEQADV 1VMI MSE A 110 UNP P77218 MET 110 MODIFIED RESIDUE SEQADV 1VMI MSE A 153 UNP P77218 MET 153 MODIFIED RESIDUE SEQADV 1VMI MSE A 201 UNP P77218 MET 201 MODIFIED RESIDUE SEQADV 1VMI MSE A 265 UNP P77218 MET 265 MODIFIED RESIDUE SEQADV 1VMI MSE A 300 UNP P77218 MET 300 MODIFIED RESIDUE SEQADV 1VMI GLY A 339 UNP P77218 SEE REMARK 999 SEQADV 1VMI LEU A 340 UNP P77218 SEE REMARK 999 SEQADV 1VMI CYS A 341 UNP P77218 SEE REMARK 999 SEQADV 1VMI GLY A 342 UNP P77218 SEE REMARK 999 SEQADV 1VMI ARG A 343 UNP P77218 SEE REMARK 999 SEQRES 1 A 355 HIS HIS HIS HIS HIS HIS THR ASP PRO ALA LEU ARG ALA SEQRES 2 A 355 ILE ILE GLU ARG CYS ARG GLU LEU ALA LEU ARG ALA PRO SEQRES 3 A 355 ALA ARG VAL VAL PHE PRO ASP ALA LEU ASP GLN ARG VAL SEQRES 4 A 355 LEU LYS ALA ALA GLN TYR LEU HIS GLN GLN GLY LEU ALA SEQRES 5 A 355 THR PRO ILE LEU VAL ALA ASN PRO PHE GLU LEU ARG GLN SEQRES 6 A 355 PHE ALA LEU SER HIS GLY VAL ALA MSE ASP GLY LEU GLN SEQRES 7 A 355 VAL ILE ASP PRO HIS GLY ASN LEU ALA MSE ARG GLU GLU SEQRES 8 A 355 PHE ALA HIS ARG TRP LEU ALA ARG ALA GLY GLU LYS THR SEQRES 9 A 355 PRO PRO ASP ALA LEU GLU LYS LEU THR ASP PRO LEU MSE SEQRES 10 A 355 PHE ALA ALA ALA MSE VAL SER ALA GLY LYS ALA ASP VAL SEQRES 11 A 355 CYS ILE ALA GLY ASN LEU SER SER THR ALA ASN VAL LEU SEQRES 12 A 355 ARG ALA GLY LEU ARG ILE ILE GLY LEU GLN PRO GLY CYS SEQRES 13 A 355 LYS THR LEU SER SER ILE PHE LEU MSE LEU PRO GLN TYR SEQRES 14 A 355 SER GLY PRO ALA LEU GLY PHE ALA ASP CYS SER VAL VAL SEQRES 15 A 355 PRO GLN PRO THR ALA ALA GLN LEU ALA ASP ILE ALA LEU SEQRES 16 A 355 ALA SER ALA GLU THR TRP ARG ALA ILE THR GLY GLU GLU SEQRES 17 A 355 PRO ARG VAL ALA MSE LEU SER PHE SER SER ASN GLY SER SEQRES 18 A 355 ALA ARG HIS PRO CYS VAL ALA ASN VAL GLN GLN ALA THR SEQRES 19 A 355 GLU ILE VAL ARG GLU ARG ALA PRO LYS LEU VAL VAL ASP SEQRES 20 A 355 GLY GLU LEU GLN PHE ASP ALA ALA PHE VAL PRO GLU VAL SEQRES 21 A 355 ALA ALA GLN LYS ALA PRO ALA SER PRO LEU GLN GLY LYS SEQRES 22 A 355 ALA ASN VAL MSE VAL PHE PRO SER LEU GLU ALA GLY ASN SEQRES 23 A 355 ILE GLY TYR LYS ILE ALA GLN ARG LEU GLY GLY TYR ARG SEQRES 24 A 355 ALA VAL GLY PRO LEU ILE GLN GLY LEU ALA ALA PRO MSE SEQRES 25 A 355 HIS ASP LEU SER ARG GLY CYS SER VAL GLN GLU ILE ILE SEQRES 26 A 355 GLU LEU ALA LEU VAL ALA ALA VAL PRO ARG GLN THR GLU SEQRES 27 A 355 VAL ASN ARG GLU SER SER LEU GLN THR LEU VAL GLU GLY SEQRES 28 A 355 LEU CYS GLY ARG MODRES 1VMI MSE A 62 MET SELENOMETHIONINE MODRES 1VMI MSE A 76 MET SELENOMETHIONINE MODRES 1VMI MSE A 105 MET SELENOMETHIONINE MODRES 1VMI MSE A 110 MET SELENOMETHIONINE MODRES 1VMI MSE A 153 MET SELENOMETHIONINE MODRES 1VMI MSE A 201 MET SELENOMETHIONINE MODRES 1VMI MSE A 265 MET SELENOMETHIONINE MODRES 1VMI MSE A 300 MET SELENOMETHIONINE HET MSE A 62 8 HET MSE A 76 8 HET MSE A 105 8 HET MSE A 110 8 HET MSE A 153 8 HET MSE A 201 8 HET MSE A 265 8 HET MSE A 300 8 HET GOL A 1 6 HET GOL A 344 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 HOH *91(H2 O) HELIX 1 1 ASP A -5 GLU A 8 1 13 HELIX 2 2 LEU A 9 ARG A 12 5 4 HELIX 3 3 ASP A 24 GLN A 37 1 14 HELIX 4 4 ASN A 47 GLY A 59 1 13 HELIX 5 5 ASN A 73 GLY A 89 1 17 HELIX 6 6 GLU A 90 THR A 92 5 3 HELIX 7 7 ASP A 95 LEU A 100 1 6 HELIX 8 8 ASP A 102 ALA A 113 1 12 HELIX 9 9 SER A 126 ILE A 138 1 13 HELIX 10 10 THR A 174 GLY A 194 1 21 HELIX 11 11 HIS A 212 ALA A 229 1 18 HELIX 12 12 GLN A 239 VAL A 245 1 7 HELIX 13 13 VAL A 245 ALA A 253 1 9 HELIX 14 14 SER A 269 GLY A 285 1 17 HELIX 15 15 SER A 308 VAL A 321 1 14 SHEET 1 A 5 GLN A 66 ILE A 68 0 SHEET 2 A 5 THR A 41 VAL A 45 1 N LEU A 44 O GLN A 66 SHEET 3 A 5 ARG A 16 PHE A 19 1 N PHE A 19 O ILE A 43 SHEET 4 A 5 VAL A 118 ALA A 121 1 O VAL A 118 N VAL A 18 SHEET 5 A 5 MSE A 300 ASP A 302 1 O HIS A 301 N CYS A 119 SHEET 1 B 6 VAL A 233 LEU A 238 0 SHEET 2 B 6 ARG A 198 LEU A 202 1 N VAL A 199 O VAL A 233 SHEET 3 B 6 VAL A 264 VAL A 266 1 O VAL A 266 N ALA A 200 SHEET 4 B 6 LEU A 162 ALA A 165 1 N GLY A 163 O MSE A 265 SHEET 5 B 6 SER A 148 PRO A 155 -1 N MSE A 153 O LEU A 162 SHEET 6 B 6 TYR A 286 GLN A 294 -1 O VAL A 289 N LEU A 152 LINK C ALA A 61 N MSE A 62 1555 1555 1.33 LINK C MSE A 62 N ASP A 63 1555 1555 1.33 LINK C ALA A 75 N MSE A 76 1555 1555 1.33 LINK C MSE A 76 N ARG A 77 1555 1555 1.33 LINK C LEU A 104 N MSE A 105 1555 1555 1.32 LINK C MSE A 105 N PHE A 106 1555 1555 1.32 LINK C ALA A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N VAL A 111 1555 1555 1.33 LINK C LEU A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N LEU A 154 1555 1555 1.32 LINK C ALA A 200 N MSE A 201 1555 1555 1.33 LINK C MSE A 201 N LEU A 202 1555 1555 1.33 LINK C VAL A 264 N MSE A 265 1555 1555 1.34 LINK C MSE A 265 N VAL A 266 1555 1555 1.32 LINK C PRO A 299 N MSE A 300 1555 1555 1.32 LINK C MSE A 300 N HIS A 301 1555 1555 1.32 CISPEP 1 GLY A 290 PRO A 291 0 7.21 SITE 1 AC1 6 SER A 168 GLN A 239 LYS A 252 ASN A 274 SITE 2 AC1 6 TYR A 277 LYS A 278 SITE 1 AC2 4 THR A 127 SER A 304 ARG A 305 HOH A 410 CRYST1 95.307 95.307 175.512 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010492 0.006058 0.000000 0.00000 SCALE2 0.000000 0.012116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005698 0.00000