HEADER TRANSCRIPTION FACTOR 29-APR-96 1VOK TITLE ARABIDOPSIS THALIANA TBP (DIMER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TATA-BOX-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION INITIATION, DNA BINDING, TRANSCRIPTION FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR D.B.NIKOLOV,S.K.BURLEY REVDAT 4 14-FEB-24 1VOK 1 REMARK REVDAT 3 03-FEB-21 1VOK 1 AUTHOR JRNL REMARK REVDAT 2 24-FEB-09 1VOK 1 VERSN REVDAT 1 08-NOV-96 1VOK 0 JRNL AUTH D.B.NIKOLOV,S.K.BURLEY JRNL TITL 2.1 A RESOLUTION REFINED STRUCTURE OF A TATA BOX-BINDING JRNL TITL 2 PROTEIN (TBP). JRNL REF NAT.STRUCT.BIOL. V. 1 621 1994 JRNL REFN ISSN 1072-8368 JRNL PMID 7634102 JRNL DOI 10.1038/NSB0994-621 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 28183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2993 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.980 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VOK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32781 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04400 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.13200 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.50000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 52.50000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.50000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.75000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.50000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 161.25000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.50000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 161.25000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.50000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.75000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 52.50000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 52.50000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 107.50000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 52.50000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 52.50000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 107.50000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 52.50000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 161.25000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 52.50000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 53.75000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.50000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 53.75000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 52.50000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 161.25000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 52.50000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 52.50000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 107.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 52.50000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -52.50000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 107.50000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 157.50000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 53.75000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 157.50000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 53.75000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 LEU A 6 REMARK 465 GLN A 199 REMARK 465 GLN A 200 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 GLN B 4 REMARK 465 GLY B 5 REMARK 465 LEU B 6 REMARK 465 GLU B 7 REMARK 465 GLY B 8 REMARK 465 SER B 9 REMARK 465 ASN B 10 REMARK 465 PRO B 11 REMARK 465 GLN B 200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 198 O REMARK 470 GLN B 199 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 122 CB CYS A 122 SG -0.113 REMARK 500 CYS B 122 CB CYS B 122 SG -0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 133 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 LEU B 133 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 PHE B 165 N - CA - C ANGL. DEV. = 18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 36 147.94 -175.74 REMARK 500 ASN A 49 34.46 -81.85 REMARK 500 ALA A 58 48.00 -81.52 REMARK 500 LYS A 68 101.22 -51.59 REMARK 500 LYS A 109 -165.69 -108.15 REMARK 500 ASP B 13 112.80 86.57 REMARK 500 CYS B 36 144.12 -179.09 REMARK 500 ASN B 53 88.55 -150.62 REMARK 500 VAL B 166 -42.08 118.28 REMARK 500 ILE B 198 121.24 -30.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2001 DBREF 1VOK A 1 200 UNP P28147 TBP1_ARATH 1 200 DBREF 1VOK B 1 200 UNP P28147 TBP1_ARATH 1 200 SEQRES 1 A 200 MET THR ASP GLN GLY LEU GLU GLY SER ASN PRO VAL ASP SEQRES 2 A 200 LEU SER LYS HIS PRO SER GLY ILE VAL PRO THR LEU GLN SEQRES 3 A 200 ASN ILE VAL SER THR VAL ASN LEU ASP CYS LYS LEU ASP SEQRES 4 A 200 LEU LYS ALA ILE ALA LEU GLN ALA ARG ASN ALA GLU TYR SEQRES 5 A 200 ASN PRO LYS ARG PHE ALA ALA VAL ILE MET ARG ILE ARG SEQRES 6 A 200 GLU PRO LYS THR THR ALA LEU ILE PHE ALA SER GLY LYS SEQRES 7 A 200 MET VAL CYS THR GLY ALA LYS SER GLU ASP PHE SER LYS SEQRES 8 A 200 MET ALA ALA ARG LYS TYR ALA ARG ILE VAL GLN LYS LEU SEQRES 9 A 200 GLY PHE PRO ALA LYS PHE LYS ASP PHE LYS ILE GLN ASN SEQRES 10 A 200 ILE VAL GLY SER CYS ASP VAL LYS PHE PRO ILE ARG LEU SEQRES 11 A 200 GLU GLY LEU ALA TYR SER HIS ALA ALA PHE SER SER TYR SEQRES 12 A 200 GLU PRO GLU LEU PHE PRO GLY LEU ILE TYR ARG MET LYS SEQRES 13 A 200 VAL PRO LYS ILE VAL LEU LEU ILE PHE VAL SER GLY LYS SEQRES 14 A 200 ILE VAL ILE THR GLY ALA LYS MET ARG ASP GLU THR TYR SEQRES 15 A 200 LYS ALA PHE GLU ASN ILE TYR PRO VAL LEU SER GLU PHE SEQRES 16 A 200 ARG LYS ILE GLN GLN SEQRES 1 B 200 MET THR ASP GLN GLY LEU GLU GLY SER ASN PRO VAL ASP SEQRES 2 B 200 LEU SER LYS HIS PRO SER GLY ILE VAL PRO THR LEU GLN SEQRES 3 B 200 ASN ILE VAL SER THR VAL ASN LEU ASP CYS LYS LEU ASP SEQRES 4 B 200 LEU LYS ALA ILE ALA LEU GLN ALA ARG ASN ALA GLU TYR SEQRES 5 B 200 ASN PRO LYS ARG PHE ALA ALA VAL ILE MET ARG ILE ARG SEQRES 6 B 200 GLU PRO LYS THR THR ALA LEU ILE PHE ALA SER GLY LYS SEQRES 7 B 200 MET VAL CYS THR GLY ALA LYS SER GLU ASP PHE SER LYS SEQRES 8 B 200 MET ALA ALA ARG LYS TYR ALA ARG ILE VAL GLN LYS LEU SEQRES 9 B 200 GLY PHE PRO ALA LYS PHE LYS ASP PHE LYS ILE GLN ASN SEQRES 10 B 200 ILE VAL GLY SER CYS ASP VAL LYS PHE PRO ILE ARG LEU SEQRES 11 B 200 GLU GLY LEU ALA TYR SER HIS ALA ALA PHE SER SER TYR SEQRES 12 B 200 GLU PRO GLU LEU PHE PRO GLY LEU ILE TYR ARG MET LYS SEQRES 13 B 200 VAL PRO LYS ILE VAL LEU LEU ILE PHE VAL SER GLY LYS SEQRES 14 B 200 ILE VAL ILE THR GLY ALA LYS MET ARG ASP GLU THR TYR SEQRES 15 B 200 LYS ALA PHE GLU ASN ILE TYR PRO VAL LEU SER GLU PHE SEQRES 16 B 200 ARG LYS ILE GLN GLN HET SO4 B2001 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *286(H2 O) HELIX 1 1 LEU A 40 GLN A 46 1 7 HELIX 2 2 GLU A 87 LEU A 104 1 18 HELIX 3 3 LEU A 130 HIS A 137 1 8 HELIX 4 4 ARG A 178 GLU A 194 1 17 HELIX 5 5 LEU B 40 GLN B 46 1 7 HELIX 6 6 GLU B 87 LYS B 103 1 17 HELIX 7 7 LEU B 130 HIS B 137 1 8 HELIX 8 8 ARG B 178 GLU B 194 1 17 SHEET 1 A 9 VAL A 60 ILE A 64 0 SHEET 2 A 9 THR A 69 ILE A 73 -1 N ILE A 73 O VAL A 60 SHEET 3 A 9 LYS A 78 ALA A 84 -1 N THR A 82 O THR A 70 SHEET 4 A 9 THR A 24 ASN A 33 -1 N VAL A 32 O MET A 79 SHEET 5 A 9 ASN A 117 ASP A 123 -1 N SER A 121 O THR A 24 SHEET 6 A 9 LYS A 169 ALA A 175 -1 N ALA A 175 O ILE A 118 SHEET 7 A 9 ILE A 160 ILE A 164 -1 N LEU A 163 O VAL A 171 SHEET 8 A 9 LEU A 151 MET A 155 -1 N MET A 155 O ILE A 160 SHEET 9 A 9 SER A 141 TYR A 143 -1 N SER A 142 O ILE A 152 SHEET 1 B10 SER B 141 TYR B 143 0 SHEET 2 B10 LEU B 151 MET B 155 -1 N ILE B 152 O SER B 142 SHEET 3 B10 ILE B 160 ILE B 164 -1 N ILE B 164 O LEU B 151 SHEET 4 B10 LYS B 169 THR B 173 -1 N THR B 173 O VAL B 161 SHEET 5 B10 ASN B 117 ASP B 123 -1 N CYS B 122 O ILE B 170 SHEET 6 B10 THR B 24 ASN B 33 -1 N VAL B 29 O ASN B 117 SHEET 7 B10 LYS B 78 ALA B 84 -1 N ALA B 84 O ILE B 28 SHEET 8 B10 THR B 69 ILE B 73 -1 N LEU B 72 O VAL B 80 SHEET 9 B10 PHE B 57 ILE B 64 -1 N ILE B 64 O THR B 69 SHEET 10 B10 ALA B 50 ASN B 53 -1 N ASN B 53 O PHE B 57 CISPEP 1 GLU A 66 PRO A 67 0 -0.72 CISPEP 2 VAL A 157 PRO A 158 0 -0.35 CISPEP 3 GLU B 66 PRO B 67 0 -0.75 CISPEP 4 VAL B 157 PRO B 158 0 0.00 SITE 1 AC1 7 ILE B 64 ARG B 65 GLU B 66 LYS B 96 SITE 2 AC1 7 HOH B1279 HOH B1281 HOH B1282 CRYST1 105.000 105.000 215.000 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009524 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004651 0.00000