HEADER TRANSCRIPTION/DNA 29-APR-96 1VOL TITLE TFIIB (HUMAN CORE DOMAIN)/TBP (A.THALIANA)/TATA ELEMENT TERNARY TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*G)- COMPND 3 3'); COMPND 4 CHAIN: C; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*AP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*C)- COMPND 8 3'); COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PROTEIN (TRANSCRIPTION FACTOR IIB (TFIIB)); COMPND 13 CHAIN: A; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: PROTEIN (TATA BINDING PROTEIN (TBP)); COMPND 17 CHAIN: B; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 4; SOURCE 12 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 13 ORGANISM_COMMON: THALE CRESS; SOURCE 14 ORGANISM_TAXID: 3702; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION INITIATION, MOLECULAR RECOGNITION, COMPLEX, KEYWDS 2 TRANSCRIPTION FACTOR, TRANSCRIPTION REGULATION, DNA, TRANSCRIPTION- KEYWDS 3 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.B.NIKOLOV,H.CHEN,E.D.HALAY,A.U.USHEVA,K.HISATAKE,D.K.LEE, AUTHOR 2 R.G.ROEDER,S.K.BURLEY REVDAT 4 14-FEB-24 1VOL 1 REMARK REVDAT 3 03-FEB-21 1VOL 1 AUTHOR JRNL SEQADV REVDAT 2 24-FEB-09 1VOL 1 VERSN REVDAT 1 08-NOV-96 1VOL 0 JRNL AUTH D.B.NIKOLOV,H.CHEN,E.D.HALAY,A.A.USHEVA,K.HISATAKE,D.K.LEE, JRNL AUTH 2 R.G.ROEDER,S.K.BURLEY JRNL TITL CRYSTAL STRUCTURE OF A TFIIB-TBP-TATA-ELEMENT TERNARY JRNL TITL 2 COMPLEX. JRNL REF NATURE V. 377 119 1995 JRNL REFN ISSN 0028-0836 JRNL PMID 7675079 JRNL DOI 10.1038/377119A0 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 14676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1619 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3065 REMARK 3 NUCLEIC ACID ATOMS : 650 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.860 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000177079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 123.00 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20995 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.95000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 GLN B 4 REMARK 465 GLY B 5 REMARK 465 LEU B 6 REMARK 465 GLU B 7 REMARK 465 GLY B 8 REMARK 465 SER B 9 REMARK 465 ASN B 10 REMARK 465 PRO B 11 REMARK 465 GLN B 199 REMARK 465 GLN B 200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 316 O REMARK 470 ILE B 198 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC D 101 C5' DC D 101 C4' 0.042 REMARK 500 CYS B 122 CB CYS B 122 SG -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 3 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT C 4 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA C 5 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT C 6 C4 - C5 - C6 ANGL. DEV. = 3.6 DEGREES REMARK 500 DA C 7 O4' - C4' - C3' ANGL. DEV. = -4.1 DEGREES REMARK 500 DA C 8 O4' - C4' - C3' ANGL. DEV. = -3.9 DEGREES REMARK 500 DA C 8 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DA C 9 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG C 11 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG C 12 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT C 15 O4' - C1' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG C 16 C3' - C2' - C1' ANGL. DEV. = -7.1 DEGREES REMARK 500 DC D 101 O4' - C1' - N1 ANGL. DEV. = 7.8 DEGREES REMARK 500 DC D 101 C2 - N3 - C4 ANGL. DEV. = -3.4 DEGREES REMARK 500 DA D 102 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG D 103 O4' - C4' - C3' ANGL. DEV. = -3.3 DEGREES REMARK 500 DC D 104 C4' - C3' - C2' ANGL. DEV. = -4.2 DEGREES REMARK 500 DC D 104 O4' - C1' - N1 ANGL. DEV. = 6.5 DEGREES REMARK 500 DC D 105 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DC D 105 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT D 107 C6 - C5 - C7 ANGL. DEV. = -4.6 DEGREES REMARK 500 DT D 108 O4' - C4' - C3' ANGL. DEV. = -5.6 DEGREES REMARK 500 DT D 108 O4' - C1' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT D 110 C6 - C5 - C7 ANGL. DEV. = -4.0 DEGREES REMARK 500 DA D 111 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA D 113 O4' - C1' - C2' ANGL. DEV. = -5.9 DEGREES REMARK 500 DA D 113 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC D 115 O4' - C1' - C2' ANGL. DEV. = -9.0 DEGREES REMARK 500 DC D 115 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC D 116 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC D 116 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 PRO A 246 C - N - CA ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 129 32.43 74.03 REMARK 500 ASN A 133 -79.20 -39.23 REMARK 500 ALA A 145 26.72 -74.82 REMARK 500 GLU A 147 -78.85 -76.33 REMARK 500 LYS A 149 -98.37 -74.07 REMARK 500 LYS A 152 -101.20 -7.98 REMARK 500 LEU A 164 47.99 -84.69 REMARK 500 TYR A 165 -49.82 -148.62 REMARK 500 ALA A 182 29.03 -74.18 REMARK 500 VAL A 183 8.08 -161.33 REMARK 500 ARG A 185 -42.22 105.99 REMARK 500 SER A 187 160.27 -46.70 REMARK 500 VAL A 206 -160.59 -109.12 REMARK 500 LEU A 208 -38.14 97.65 REMARK 500 ILE A 209 124.92 76.10 REMARK 500 CYS A 223 34.20 70.65 REMARK 500 PRO A 246 -71.89 -26.25 REMARK 500 ALA A 261 -70.48 -47.64 REMARK 500 SER A 265 -159.99 -115.04 REMARK 500 ALA A 266 -79.73 -88.98 REMARK 500 GLU A 267 85.30 -42.13 REMARK 500 PRO A 294 -6.14 -59.92 REMARK 500 THR A 302 -57.40 112.28 REMARK 500 LYS A 305 -115.54 -65.89 REMARK 500 PHE A 306 79.57 131.55 REMARK 500 ASP B 13 75.53 137.18 REMARK 500 ASP B 35 -62.50 79.59 REMARK 500 ALA B 42 -76.71 -63.04 REMARK 500 ILE B 43 -31.49 -32.00 REMARK 500 ARG B 48 -29.75 76.15 REMARK 500 GLU B 51 108.68 178.41 REMARK 500 ALA B 59 140.74 -171.41 REMARK 500 GLU B 66 95.77 53.66 REMARK 500 LYS B 68 92.76 -54.41 REMARK 500 SER B 76 -3.20 -147.63 REMARK 500 SER B 86 139.66 -179.65 REMARK 500 LYS B 103 1.76 -61.88 REMARK 500 PRO B 107 35.33 -63.85 REMARK 500 ALA B 108 129.31 -39.28 REMARK 500 PHE B 113 135.10 -39.86 REMARK 500 HIS B 137 46.21 -109.70 REMARK 500 PHE B 148 133.60 -173.03 REMARK 500 PRO B 149 6.32 -67.81 REMARK 500 LYS B 156 -74.37 -53.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG C 1 0.06 SIDE CHAIN REMARK 500 DT D 112 0.07 SIDE CHAIN REMARK 500 TYR A 146 0.09 SIDE CHAIN REMARK 500 TYR B 97 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1VOL A 113 316 UNP Q00403 TF2B_HUMAN 113 316 DBREF 1VOL B 1 200 UNP P28147 TBP1_ARATH 1 200 DBREF 1VOL C 1 16 PDB 1VOL 1VOL 1 16 DBREF 1VOL D 101 116 PDB 1VOL 1VOL 101 116 SEQADV 1VOL LYS A 134 UNP Q00403 ILE 134 CONFLICT SEQADV 1VOL ARG A 143 UNP Q00403 LYS 143 CONFLICT SEQADV 1VOL ALA A 145 UNP Q00403 VAL 145 CONFLICT SEQRES 1 C 16 DG DG DC DT DA DT DA DA DA DA DG DG DG SEQRES 2 C 16 DC DT DG SEQRES 1 D 16 DC DA DG DC DC DC DT DT DT DT DA DT DA SEQRES 2 D 16 DG DC DC SEQRES 1 A 204 ALA MET MET ASN ALA PHE LYS GLU ILE THR THR MET ALA SEQRES 2 A 204 ASP ARG ILE ASN LEU PRO ARG ASN LYS VAL ASP ARG THR SEQRES 3 A 204 ASN ASN LEU PHE ARG GLN ALA TYR GLU GLN LYS SER LEU SEQRES 4 A 204 LYS GLY ARG ALA ASN ASP ALA ILE ALA SER ALA CYS LEU SEQRES 5 A 204 TYR ILE ALA CYS ARG GLN GLU GLY VAL PRO ARG THR PHE SEQRES 6 A 204 LYS GLU ILE CYS ALA VAL SER ARG ILE SER LYS LYS GLU SEQRES 7 A 204 ILE GLY ARG CYS PHE LYS LEU ILE LEU LYS ALA LEU GLU SEQRES 8 A 204 THR SER VAL ASP LEU ILE THR THR GLY ASP PHE MET SER SEQRES 9 A 204 ARG PHE CYS SER ASN LEU CYS LEU PRO LYS GLN VAL GLN SEQRES 10 A 204 MET ALA ALA THR HIS ILE ALA ARG LYS ALA VAL GLU LEU SEQRES 11 A 204 ASP LEU VAL PRO GLY ARG SER PRO ILE SER VAL ALA ALA SEQRES 12 A 204 ALA ALA ILE TYR MET ALA SER GLN ALA SER ALA GLU LYS SEQRES 13 A 204 ARG THR GLN LYS GLU ILE GLY ASP ILE ALA GLY VAL ALA SEQRES 14 A 204 ASP VAL THR ILE ARG GLN SER TYR ARG LEU ILE TYR PRO SEQRES 15 A 204 ARG ALA PRO ASP LEU PHE PRO THR ASP PHE LYS PHE ASP SEQRES 16 A 204 THR PRO VAL ASP LYS LEU PRO GLN LEU SEQRES 1 B 200 MET THR ASP GLN GLY LEU GLU GLY SER ASN PRO VAL ASP SEQRES 2 B 200 LEU SER LYS HIS PRO SER GLY ILE VAL PRO THR LEU GLN SEQRES 3 B 200 ASN ILE VAL SER THR VAL ASN LEU ASP CYS LYS LEU ASP SEQRES 4 B 200 LEU LYS ALA ILE ALA LEU GLN ALA ARG ASN ALA GLU TYR SEQRES 5 B 200 ASN PRO LYS ARG PHE ALA ALA VAL ILE MET ARG ILE ARG SEQRES 6 B 200 GLU PRO LYS THR THR ALA LEU ILE PHE ALA SER GLY LYS SEQRES 7 B 200 MET VAL CYS THR GLY ALA LYS SER GLU ASP PHE SER LYS SEQRES 8 B 200 MET ALA ALA ARG LYS TYR ALA ARG ILE VAL GLN LYS LEU SEQRES 9 B 200 GLY PHE PRO ALA LYS PHE LYS ASP PHE LYS ILE GLN ASN SEQRES 10 B 200 ILE VAL GLY SER CYS ASP VAL LYS PHE PRO ILE ARG LEU SEQRES 11 B 200 GLU GLY LEU ALA TYR SER HIS ALA ALA PHE SER SER TYR SEQRES 12 B 200 GLU PRO GLU LEU PHE PRO GLY LEU ILE TYR ARG MET LYS SEQRES 13 B 200 VAL PRO LYS ILE VAL LEU LEU ILE PHE VAL SER GLY LYS SEQRES 14 B 200 ILE VAL ILE THR GLY ALA LYS MET ARG ASP GLU THR TYR SEQRES 15 B 200 LYS ALA PHE GLU ASN ILE TYR PRO VAL LEU SER GLU PHE SEQRES 16 B 200 ARG LYS ILE GLN GLN HELIX 1 1 MET A 115 ARG A 127 1 13 HELIX 2 2 ARG A 132 GLU A 147 1 16 HELIX 3 3 ASN A 156 GLN A 170 1 15 HELIX 4 4 PHE A 177 VAL A 183 1 7 HELIX 5 5 LYS A 188 ALA A 201 1 14 HELIX 6 6 THR A 211 ASP A 213 5 3 HELIX 7 7 MET A 215 LEU A 222 1 8 HELIX 8 8 LYS A 226 GLU A 241 1 16 HELIX 9 9 PRO A 250 ALA A 264 1 15 HELIX 10 10 GLN A 271 ALA A 278 1 8 HELIX 11 11 ASP A 282 LEU A 299 1 18 HELIX 12 12 VAL A 310 LYS A 312 5 3 HELIX 13 13 LEU B 40 ALA B 47 1 8 HELIX 14 14 GLU B 87 LEU B 104 1 18 HELIX 15 15 LEU B 130 SER B 136 1 7 HELIX 16 16 ARG B 178 GLU B 194 1 17 SHEET 1 A 6 VAL B 60 ILE B 64 0 SHEET 2 A 6 THR B 69 ILE B 73 -1 N ILE B 73 O VAL B 60 SHEET 3 A 6 LYS B 78 ALA B 84 -1 N THR B 82 O THR B 70 SHEET 4 A 6 THR B 24 ASN B 33 -1 N VAL B 32 O MET B 79 SHEET 5 A 6 ASN B 117 ASP B 123 -1 N SER B 121 O THR B 24 SHEET 6 A 6 LYS B 169 ILE B 172 -1 N ILE B 172 O GLY B 120 SHEET 1 B 2 LEU B 151 ARG B 154 0 SHEET 2 B 2 VAL B 161 ILE B 164 -1 N ILE B 164 O LEU B 151 CISPEP 1 GLU B 66 PRO B 67 0 -0.59 CISPEP 2 VAL B 157 PRO B 158 0 -0.15 CRYST1 69.900 78.000 134.700 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014306 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007424 0.00000