HEADER TRANSFERASE 08-OCT-04 1VP4 TITLE CRYSTAL STRUCTURE OF A PUTATIVE AMINOTRANSFERASE (TM1131) FROM TITLE 2 THERMOTOGA MARITIMA MSB8 AT 1.82 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOTRANSFERASE, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM1131; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 1VP4 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 1VP4 1 VERSN REVDAT 4 23-MAR-11 1VP4 1 HEADER TITLE KEYWDS REVDAT 3 24-FEB-09 1VP4 1 VERSN REVDAT 2 18-JAN-05 1VP4 1 REMARK REVDAT 1 26-OCT-04 1VP4 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF AMINOTRANSFERASE, PUTATIVE (TM1131) JRNL TITL 2 FROM THERMOTOGA MARITIMA AT 1.82 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 89425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4716 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5671 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 286 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6535 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 148 REMARK 3 SOLVENT ATOMS : 353 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 36.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.065 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6817 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 6361 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9186 ; 1.553 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14704 ; 0.877 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 834 ; 6.565 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 285 ;34.714 ;23.895 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1160 ;12.992 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;22.090 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1039 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7408 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1362 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1505 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6582 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3455 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3884 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 355 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.242 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.135 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 18 ; 0.231 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4334 ; 2.226 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1721 ; 0.617 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6738 ; 2.801 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2798 ; 5.417 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2448 ; 7.386 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 1 B 413 4 REMARK 3 1 A 1 A 413 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 B (A): 6287 ; 0.36 ; 0.50 REMARK 3 MEDIUM THERMAL 1 B (A**2): 6287 ; 0.96 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 413 REMARK 3 ORIGIN FOR THE GROUP (A): -27.4120 117.8760 8.0020 REMARK 3 T TENSOR REMARK 3 T11: -0.1634 T22: -0.2021 REMARK 3 T33: -0.2628 T12: -0.0328 REMARK 3 T13: -0.0032 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.4016 L22: 0.7600 REMARK 3 L33: 0.2549 L12: 0.3212 REMARK 3 L13: 0.0782 L23: 0.0531 REMARK 3 S TENSOR REMARK 3 S11: -0.0609 S12: 0.0489 S13: -0.0010 REMARK 3 S21: -0.0965 S22: 0.0444 S23: 0.1035 REMARK 3 S31: -0.0374 S32: -0.0771 S33: 0.0165 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 413 REMARK 3 ORIGIN FOR THE GROUP (A): -20.9470 142.1050 31.6730 REMARK 3 T TENSOR REMARK 3 T11: -0.1231 T22: -0.2041 REMARK 3 T33: -0.2664 T12: 0.0195 REMARK 3 T13: -0.0146 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.4621 L22: 0.8449 REMARK 3 L33: 0.5786 L12: 0.0443 REMARK 3 L13: -0.0136 L23: 0.1527 REMARK 3 S TENSOR REMARK 3 S11: -0.0661 S12: -0.0641 S13: 0.0646 REMARK 3 S21: 0.1218 S22: 0.0221 S23: 0.0923 REMARK 3 S31: -0.0975 S32: -0.0939 S33: 0.0440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS POOR DENSITY REGION AT B16-20. UNKNOWN LIGANDS MODELED REMARK 3 NEAR PLP IN EACH MONOMER. REMARK 4 REMARK 4 1VP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000002028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-04; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS REMARK 200 BEAMLINE : 8.2.1; 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794; 1.0000,0.9796 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111); NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94227 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 28.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP, SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.0% PEG-3350, 0.2M NAFORMATE, 2.0MM REMARK 280 N-DODECYL-BETA-D-MALTOSIDE, VAPOR DIFFUSION,SITTING DROP, REMARK 280 NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.80067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.90033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.35050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 11.45017 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.25083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 MSE B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A -6 CG1 CG2 CD1 REMARK 470 HIS A -5 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A -4 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A -3 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 MSE A 1 CG SE CE REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 LYS A 26 CE NZ REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 LYS A 49 CD CE NZ REMARK 470 LYS A 61 CD CE NZ REMARK 470 LYS A 84 CE NZ REMARK 470 GLU A 121 CD OE1 OE2 REMARK 470 GLU A 161 CD OE1 OE2 REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 166 CD OE1 OE2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 GLU A 226 CD OE1 OE2 REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 470 GLU A 306 CD OE1 OE2 REMARK 470 LYS A 330 CE NZ REMARK 470 LYS A 333 CE NZ REMARK 470 GLU A 346 CG CD OE1 OE2 REMARK 470 LYS A 360 CE NZ REMARK 470 GLU A 390 CD OE1 OE2 REMARK 470 GLU A 401 CD OE1 OE2 REMARK 470 MSE B 1 CG SE CE REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 LYS B 17 CG CD CE NZ REMARK 470 ARG B 22 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 23 CG CD OE1 OE2 REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 ASP B 32 CG OD1 OD2 REMARK 470 LYS B 61 CD CE NZ REMARK 470 GLU B 161 CG CD OE1 OE2 REMARK 470 ARG B 162 CD NE CZ NH1 NH2 REMARK 470 GLU B 166 CG CD OE1 OE2 REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 LYS B 172 CD CE NZ REMARK 470 LYS B 174 CG CD CE NZ REMARK 470 LYS B 207 CE NZ REMARK 470 GLU B 226 CG CD OE1 OE2 REMARK 470 GLU B 238 CG CD OE1 OE2 REMARK 470 GLU B 306 CD OE1 OE2 REMARK 470 LYS B 333 CE NZ REMARK 470 GLU B 346 CG CD OE1 OE2 REMARK 470 GLU B 390 CD OE1 OE2 REMARK 470 LYS B 391 CE NZ REMARK 470 LYS B 397 CE NZ REMARK 470 LYS B 408 CG CD CE NZ REMARK 470 GLU B 409 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 224 NH2 ARG A 312 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 385 CB CYS A 385 SG -0.144 REMARK 500 CYS B 385 CB CYS B 385 SG -0.129 REMARK 500 CYS B 385 CB CYS B 385 SG -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 312 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 312 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP B 127 CB - CG - OD1 ANGL. DEV. = 8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -1 91.25 126.60 REMARK 500 HIS A 0 -52.26 138.73 REMARK 500 LEU A 250 -67.62 -132.03 REMARK 500 ASP A 277 13.08 -152.94 REMARK 500 LEU A 278 -65.92 69.05 REMARK 500 HIS B -1 -16.74 -45.44 REMARK 500 HIS B 0 47.25 -92.68 REMARK 500 LEU B 250 -66.49 -135.69 REMARK 500 ALA B 251 116.82 -167.75 REMARK 500 ASP B 277 12.04 -152.29 REMARK 500 LEU B 278 -65.80 67.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A -2 HIS A -1 -143.55 REMARK 500 HIS A -1 HIS A 0 -138.08 REMARK 500 HIS B 0 MSE B 1 144.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 616 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 617 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 618 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 619 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 620 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 621 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 622 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 613 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282997 RELATED DB: TARGETDB DBREF 1VP4 A 1 413 UNP Q9X0L5 Q9X0L5_THEMA 1 413 DBREF 1VP4 B 1 413 UNP Q9X0L5 Q9X0L5_THEMA 1 413 SEQADV 1VP4 MSE A -11 UNP Q9X0L5 EXPRESSION TAG SEQADV 1VP4 GLY A -10 UNP Q9X0L5 EXPRESSION TAG SEQADV 1VP4 SER A -9 UNP Q9X0L5 EXPRESSION TAG SEQADV 1VP4 ASP A -8 UNP Q9X0L5 EXPRESSION TAG SEQADV 1VP4 LYS A -7 UNP Q9X0L5 EXPRESSION TAG SEQADV 1VP4 ILE A -6 UNP Q9X0L5 EXPRESSION TAG SEQADV 1VP4 HIS A -5 UNP Q9X0L5 EXPRESSION TAG SEQADV 1VP4 HIS A -4 UNP Q9X0L5 EXPRESSION TAG SEQADV 1VP4 HIS A -3 UNP Q9X0L5 EXPRESSION TAG SEQADV 1VP4 HIS A -2 UNP Q9X0L5 EXPRESSION TAG SEQADV 1VP4 HIS A -1 UNP Q9X0L5 EXPRESSION TAG SEQADV 1VP4 HIS A 0 UNP Q9X0L5 EXPRESSION TAG SEQADV 1VP4 MSE A 1 UNP Q9X0L5 MET 1 MODIFIED RESIDUE SEQADV 1VP4 MSE A 16 UNP Q9X0L5 MET 16 MODIFIED RESIDUE SEQADV 1VP4 MSE A 89 UNP Q9X0L5 MET 89 MODIFIED RESIDUE SEQADV 1VP4 MSE A 155 UNP Q9X0L5 MET 155 MODIFIED RESIDUE SEQADV 1VP4 MSE A 258 UNP Q9X0L5 MET 258 MODIFIED RESIDUE SEQADV 1VP4 MSE A 315 UNP Q9X0L5 MET 315 MODIFIED RESIDUE SEQADV 1VP4 MSE A 353 UNP Q9X0L5 MET 353 MODIFIED RESIDUE SEQADV 1VP4 MSE A 380 UNP Q9X0L5 MET 380 MODIFIED RESIDUE SEQADV 1VP4 MSE B -11 UNP Q9X0L5 CLONING ARTIFACT SEQADV 1VP4 GLY B -10 UNP Q9X0L5 CLONING ARTIFACT SEQADV 1VP4 SER B -9 UNP Q9X0L5 CLONING ARTIFACT SEQADV 1VP4 ASP B -8 UNP Q9X0L5 CLONING ARTIFACT SEQADV 1VP4 LYS B -7 UNP Q9X0L5 CLONING ARTIFACT SEQADV 1VP4 ILE B -6 UNP Q9X0L5 CLONING ARTIFACT SEQADV 1VP4 HIS B -5 UNP Q9X0L5 CLONING ARTIFACT SEQADV 1VP4 HIS B -4 UNP Q9X0L5 CLONING ARTIFACT SEQADV 1VP4 HIS B -3 UNP Q9X0L5 CLONING ARTIFACT SEQADV 1VP4 HIS B -2 UNP Q9X0L5 CLONING ARTIFACT SEQADV 1VP4 HIS B -1 UNP Q9X0L5 CLONING ARTIFACT SEQADV 1VP4 HIS B 0 UNP Q9X0L5 CLONING ARTIFACT SEQADV 1VP4 MSE B 1 UNP Q9X0L5 MET 1 MODIFIED RESIDUE SEQADV 1VP4 MSE B 16 UNP Q9X0L5 MET 16 MODIFIED RESIDUE SEQADV 1VP4 MSE B 89 UNP Q9X0L5 MET 89 MODIFIED RESIDUE SEQADV 1VP4 MSE B 155 UNP Q9X0L5 MET 155 MODIFIED RESIDUE SEQADV 1VP4 MSE B 258 UNP Q9X0L5 MET 258 MODIFIED RESIDUE SEQADV 1VP4 MSE B 315 UNP Q9X0L5 MET 315 MODIFIED RESIDUE SEQADV 1VP4 MSE B 353 UNP Q9X0L5 MET 353 MODIFIED RESIDUE SEQADV 1VP4 MSE B 380 UNP Q9X0L5 MET 380 MODIFIED RESIDUE SEQRES 1 A 425 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 425 VAL VAL ASN LEU GLU GLY LYS ILE SER LYS ILE GLY GLN SEQRES 3 A 425 ASN MSE LYS SER SER ILE ILE ARG GLU ILE LEU LYS PHE SEQRES 4 A 425 ALA ALA ASP LYS ASP ALA ILE SER PHE GLY GLY GLY VAL SEQRES 5 A 425 PRO ASP PRO GLU THR PHE PRO ARG LYS GLU LEU ALA GLU SEQRES 6 A 425 ILE ALA LYS GLU ILE ILE GLU LYS GLU TYR HIS TYR THR SEQRES 7 A 425 LEU GLN TYR SER THR THR GLU GLY ASP PRO VAL LEU LYS SEQRES 8 A 425 GLN GLN ILE LEU LYS LEU LEU GLU ARG MSE TYR GLY ILE SEQRES 9 A 425 THR GLY LEU ASP GLU ASP ASN LEU ILE PHE THR VAL GLY SEQRES 10 A 425 SER GLN GLN ALA LEU ASP LEU ILE GLY LYS LEU PHE LEU SEQRES 11 A 425 ASP ASP GLU SER TYR CYS VAL LEU ASP ASP PRO ALA TYR SEQRES 12 A 425 LEU GLY ALA ILE ASN ALA PHE ARG GLN TYR LEU ALA ASN SEQRES 13 A 425 PHE VAL VAL VAL PRO LEU GLU ASP ASP GLY MSE ASP LEU SEQRES 14 A 425 ASN VAL LEU GLU ARG LYS LEU SER GLU PHE ASP LYS ASN SEQRES 15 A 425 GLY LYS ILE LYS GLN VAL LYS PHE ILE TYR VAL VAL SER SEQRES 16 A 425 ASN PHE HIS ASN PRO ALA GLY VAL THR THR SER LEU GLU SEQRES 17 A 425 LYS ARG LYS ALA LEU VAL GLU ILE ALA GLU LYS TYR ASP SEQRES 18 A 425 LEU PHE ILE VAL GLU ASP ASP PRO TYR GLY ALA LEU ARG SEQRES 19 A 425 TYR GLU GLY GLU THR VAL ASP PRO ILE PHE LYS ILE GLY SEQRES 20 A 425 GLY PRO GLU ARG VAL VAL LEU LEU ASN THR PHE SER LYS SEQRES 21 A 425 VAL LEU ALA PRO GLY LEU ARG ILE GLY MSE VAL ALA GLY SEQRES 22 A 425 SER LYS GLU PHE ILE ARG LYS ILE VAL GLN ALA LYS GLN SEQRES 23 A 425 SER ALA ASP LEU CYS SER PRO ALA ILE THR HIS ARG LEU SEQRES 24 A 425 ALA ALA ARG TYR LEU GLU ARG TYR ASP LEU LEU GLU GLN SEQRES 25 A 425 LEU LYS PRO THR ILE GLU LEU TYR ARG ARG LYS ARG THR SEQRES 26 A 425 VAL MSE LEU ASN ALA LEU GLU GLU TYR PHE SER ASP ILE SEQRES 27 A 425 PRO GLY VAL LYS TRP VAL LYS SER GLU GLY GLY LEU PHE SEQRES 28 A 425 ILE TRP LEU THR LEU PRO GLU GLY PHE ASP THR TRP GLU SEQRES 29 A 425 MSE PHE GLU TYR ALA LYS ARG LYS LYS VAL PHE TYR VAL SEQRES 30 A 425 PRO GLY ARG VAL PHE LYS VAL TYR ASP GLU PRO SER PRO SEQRES 31 A 425 SER MSE ARG LEU SER PHE CYS LEU PRO PRO ASP GLU LYS SEQRES 32 A 425 ILE VAL GLU GLY ILE LYS ARG LEU ARG GLU VAL VAL LEU SEQRES 33 A 425 GLU TYR GLY LYS GLU LYS HIS LEU LEU SEQRES 1 B 425 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 B 425 VAL VAL ASN LEU GLU GLY LYS ILE SER LYS ILE GLY GLN SEQRES 3 B 425 ASN MSE LYS SER SER ILE ILE ARG GLU ILE LEU LYS PHE SEQRES 4 B 425 ALA ALA ASP LYS ASP ALA ILE SER PHE GLY GLY GLY VAL SEQRES 5 B 425 PRO ASP PRO GLU THR PHE PRO ARG LYS GLU LEU ALA GLU SEQRES 6 B 425 ILE ALA LYS GLU ILE ILE GLU LYS GLU TYR HIS TYR THR SEQRES 7 B 425 LEU GLN TYR SER THR THR GLU GLY ASP PRO VAL LEU LYS SEQRES 8 B 425 GLN GLN ILE LEU LYS LEU LEU GLU ARG MSE TYR GLY ILE SEQRES 9 B 425 THR GLY LEU ASP GLU ASP ASN LEU ILE PHE THR VAL GLY SEQRES 10 B 425 SER GLN GLN ALA LEU ASP LEU ILE GLY LYS LEU PHE LEU SEQRES 11 B 425 ASP ASP GLU SER TYR CYS VAL LEU ASP ASP PRO ALA TYR SEQRES 12 B 425 LEU GLY ALA ILE ASN ALA PHE ARG GLN TYR LEU ALA ASN SEQRES 13 B 425 PHE VAL VAL VAL PRO LEU GLU ASP ASP GLY MSE ASP LEU SEQRES 14 B 425 ASN VAL LEU GLU ARG LYS LEU SER GLU PHE ASP LYS ASN SEQRES 15 B 425 GLY LYS ILE LYS GLN VAL LYS PHE ILE TYR VAL VAL SER SEQRES 16 B 425 ASN PHE HIS ASN PRO ALA GLY VAL THR THR SER LEU GLU SEQRES 17 B 425 LYS ARG LYS ALA LEU VAL GLU ILE ALA GLU LYS TYR ASP SEQRES 18 B 425 LEU PHE ILE VAL GLU ASP ASP PRO TYR GLY ALA LEU ARG SEQRES 19 B 425 TYR GLU GLY GLU THR VAL ASP PRO ILE PHE LYS ILE GLY SEQRES 20 B 425 GLY PRO GLU ARG VAL VAL LEU LEU ASN THR PHE SER LYS SEQRES 21 B 425 VAL LEU ALA PRO GLY LEU ARG ILE GLY MSE VAL ALA GLY SEQRES 22 B 425 SER LYS GLU PHE ILE ARG LYS ILE VAL GLN ALA LYS GLN SEQRES 23 B 425 SER ALA ASP LEU CYS SER PRO ALA ILE THR HIS ARG LEU SEQRES 24 B 425 ALA ALA ARG TYR LEU GLU ARG TYR ASP LEU LEU GLU GLN SEQRES 25 B 425 LEU LYS PRO THR ILE GLU LEU TYR ARG ARG LYS ARG THR SEQRES 26 B 425 VAL MSE LEU ASN ALA LEU GLU GLU TYR PHE SER ASP ILE SEQRES 27 B 425 PRO GLY VAL LYS TRP VAL LYS SER GLU GLY GLY LEU PHE SEQRES 28 B 425 ILE TRP LEU THR LEU PRO GLU GLY PHE ASP THR TRP GLU SEQRES 29 B 425 MSE PHE GLU TYR ALA LYS ARG LYS LYS VAL PHE TYR VAL SEQRES 30 B 425 PRO GLY ARG VAL PHE LYS VAL TYR ASP GLU PRO SER PRO SEQRES 31 B 425 SER MSE ARG LEU SER PHE CYS LEU PRO PRO ASP GLU LYS SEQRES 32 B 425 ILE VAL GLU GLY ILE LYS ARG LEU ARG GLU VAL VAL LEU SEQRES 33 B 425 GLU TYR GLY LYS GLU LYS HIS LEU LEU MODRES 1VP4 MSE A 1 MET SELENOMETHIONINE MODRES 1VP4 MSE A 16 MET SELENOMETHIONINE MODRES 1VP4 MSE A 89 MET SELENOMETHIONINE MODRES 1VP4 MSE A 155 MET SELENOMETHIONINE MODRES 1VP4 MSE A 258 MET SELENOMETHIONINE MODRES 1VP4 MSE A 315 MET SELENOMETHIONINE MODRES 1VP4 MSE A 353 MET SELENOMETHIONINE MODRES 1VP4 MSE A 380 MET SELENOMETHIONINE MODRES 1VP4 MSE B 1 MET SELENOMETHIONINE MODRES 1VP4 MSE B 16 MET SELENOMETHIONINE MODRES 1VP4 MSE B 89 MET SELENOMETHIONINE MODRES 1VP4 MSE B 155 MET SELENOMETHIONINE MODRES 1VP4 MSE B 258 MET SELENOMETHIONINE MODRES 1VP4 MSE B 315 MET SELENOMETHIONINE MODRES 1VP4 MSE B 353 MET SELENOMETHIONINE MODRES 1VP4 MSE B 380 MET SELENOMETHIONINE HET MSE A 1 5 HET MSE A 16 8 HET MSE A 89 12 HET MSE A 155 8 HET MSE A 258 8 HET MSE A 315 8 HET MSE A 353 8 HET MSE A 380 8 HET MSE B 1 5 HET MSE B 16 8 HET MSE B 89 11 HET MSE B 155 8 HET MSE B 258 8 HET MSE B 315 8 HET MSE B 353 8 HET MSE B 380 8 HET PLP A 501 15 HET UNL A 601 5 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET FMT A 605 3 HET FMT A 606 3 HET FMT A 607 3 HET FMT A 608 3 HET FMT A 609 3 HET FMT A 610 3 HET FMT A 611 5 HET FMT A 612 3 HET FMT A 613 3 HET FMT A 614 3 HET FMT A 615 3 HET FMT A 616 3 HET FMT A 617 3 HET FMT A 618 3 HET FMT A 619 3 HET FMT A 620 3 HET FMT A 621 3 HET FMT A 622 3 HET PLP B 501 15 HET UNL B 601 8 HET EDO B 602 4 HET EDO B 603 4 HET EDO B 604 4 HET FMT B 605 3 HET FMT B 606 5 HET FMT B 607 3 HET FMT B 608 3 HET FMT B 609 3 HET FMT B 610 3 HET FMT B 611 3 HET FMT B 612 3 HET FMT B 613 3 HETNAM MSE SELENOMETHIONINE HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM UNL UNKNOWN LIGAND HETNAM EDO 1,2-ETHANEDIOL HETNAM FMT FORMIC ACID HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 5 EDO 6(C2 H6 O2) FORMUL 8 FMT 27(C H2 O2) FORMUL 40 HOH *353(H2 O) HELIX 1 1 HIS A 0 ILE A 9 1 10 HELIX 2 2 SER A 10 ASN A 15 1 6 HELIX 3 3 ILE A 20 LEU A 25 1 6 HELIX 4 4 ASP A 42 PHE A 46 5 5 HELIX 5 5 PRO A 47 GLU A 62 1 16 HELIX 6 6 GLU A 62 LEU A 67 1 6 HELIX 7 7 ASP A 75 GLY A 91 1 17 HELIX 8 8 ASP A 96 ASP A 98 5 3 HELIX 9 9 GLY A 105 LEU A 118 1 14 HELIX 10 10 TYR A 131 GLN A 140 1 10 HELIX 11 11 ASP A 156 ASN A 170 1 15 HELIX 12 12 LYS A 172 LYS A 174 5 3 HELIX 13 13 SER A 194 TYR A 208 1 15 HELIX 14 14 PRO A 230 GLY A 236 1 7 HELIX 15 15 ALA A 251 LEU A 254 5 4 HELIX 16 16 SER A 262 LEU A 278 1 17 HELIX 17 17 PRO A 281 TYR A 295 1 15 HELIX 18 18 ASP A 296 LEU A 301 1 6 HELIX 19 19 LEU A 301 PHE A 323 1 23 HELIX 20 20 MSE A 353 LYS A 361 1 9 HELIX 21 21 ARG A 368 LYS A 371 5 4 HELIX 22 22 PRO A 388 LYS A 410 1 23 HELIX 23 23 MSE B 1 ILE B 9 1 9 HELIX 24 24 SER B 10 ASN B 15 1 6 HELIX 25 25 ILE B 20 LEU B 25 1 6 HELIX 26 26 ASP B 42 PHE B 46 5 5 HELIX 27 27 PRO B 47 GLU B 62 1 16 HELIX 28 28 GLU B 62 LEU B 67 1 6 HELIX 29 29 ASP B 75 GLY B 91 1 17 HELIX 30 30 ASP B 96 ASP B 98 5 3 HELIX 31 31 GLY B 105 LEU B 118 1 14 HELIX 32 32 TYR B 131 GLN B 140 1 10 HELIX 33 33 ASP B 156 ASN B 170 1 15 HELIX 34 34 LYS B 172 LYS B 174 5 3 HELIX 35 35 SER B 194 TYR B 208 1 15 HELIX 36 36 PRO B 230 GLY B 236 1 7 HELIX 37 37 ALA B 251 LEU B 254 5 4 HELIX 38 38 SER B 262 LEU B 278 1 17 HELIX 39 39 PRO B 281 TYR B 295 1 15 HELIX 40 40 ASP B 296 LEU B 301 1 6 HELIX 41 41 LEU B 301 SER B 324 1 24 HELIX 42 42 MSE B 353 LYS B 361 1 9 HELIX 43 43 ARG B 368 LYS B 371 5 4 HELIX 44 44 PRO B 388 LYS B 410 1 23 SHEET 1 A 2 ILE A 34 SER A 35 0 SHEET 2 A 2 VAL A 362 PHE A 363 1 O PHE A 363 N ILE A 34 SHEET 1 B 8 LEU A 100 VAL A 104 0 SHEET 2 B 8 ILE A 256 ALA A 260 -1 O GLY A 257 N THR A 103 SHEET 3 B 8 VAL A 240 THR A 245 -1 N LEU A 242 O ALA A 260 SHEET 4 B 8 PHE A 211 ASP A 215 1 N GLU A 214 O LEU A 243 SHEET 5 B 8 VAL A 176 VAL A 182 1 N VAL A 181 O ASP A 215 SHEET 6 B 8 TYR A 123 ASP A 128 1 N TYR A 123 O LYS A 177 SHEET 7 B 8 ASN A 144 GLU A 151 1 O VAL A 146 N CYS A 124 SHEET 8 B 8 GLY A 154 MSE A 155 -1 O GLY A 154 N GLU A 151 SHEET 1 C 4 LYS A 330 TRP A 331 0 SHEET 2 C 4 PHE A 339 THR A 343 -1 O THR A 343 N LYS A 330 SHEET 3 C 4 SER A 379 SER A 383 -1 O LEU A 382 N ILE A 340 SHEET 4 C 4 VAL A 365 PRO A 366 -1 N VAL A 365 O ARG A 381 SHEET 1 D 2 ILE B 34 SER B 35 0 SHEET 2 D 2 VAL B 362 PHE B 363 1 O PHE B 363 N ILE B 34 SHEET 1 E 8 LEU B 100 VAL B 104 0 SHEET 2 E 8 ILE B 256 ALA B 260 -1 O VAL B 259 N ILE B 101 SHEET 3 E 8 VAL B 240 THR B 245 -1 N ASN B 244 O MSE B 258 SHEET 4 E 8 PHE B 211 ASP B 215 1 N GLU B 214 O LEU B 243 SHEET 5 E 8 VAL B 176 VAL B 181 1 N VAL B 181 O ASP B 215 SHEET 6 E 8 TYR B 123 ASP B 128 1 N VAL B 125 O TYR B 180 SHEET 7 E 8 ASN B 144 GLU B 151 1 O VAL B 146 N CYS B 124 SHEET 8 E 8 GLY B 154 MSE B 155 -1 O GLY B 154 N GLU B 151 SHEET 1 F 4 LYS B 330 TRP B 331 0 SHEET 2 F 4 PHE B 339 THR B 343 -1 O THR B 343 N LYS B 330 SHEET 3 F 4 SER B 379 SER B 383 -1 O LEU B 382 N ILE B 340 SHEET 4 F 4 VAL B 365 PRO B 366 -1 N VAL B 365 O ARG B 381 LINK C HIS A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N VAL A 2 1555 1555 1.33 LINK C ASN A 15 N MSE A 16 1555 1555 1.33 LINK C MSE A 16 N LYS A 17 1555 1555 1.34 LINK C ARG A 88 N MSE A 89 1555 1555 1.34 LINK C MSE A 89 N TYR A 90 1555 1555 1.33 LINK C GLY A 154 N MSE A 155 1555 1555 1.31 LINK C MSE A 155 N ASP A 156 1555 1555 1.33 LINK NZ LYS A 248 C4A PLP A 501 1555 1555 1.69 LINK C GLY A 257 N MSE A 258 1555 1555 1.32 LINK C MSE A 258 N VAL A 259 1555 1555 1.32 LINK C VAL A 314 N MSE A 315 1555 1555 1.33 LINK C MSE A 315 N LEU A 316 1555 1555 1.32 LINK C GLU A 352 N MSE A 353 1555 1555 1.34 LINK C MSE A 353 N PHE A 354 1555 1555 1.33 LINK C SER A 379 N MSE A 380 1555 1555 1.32 LINK C MSE A 380 N ARG A 381 1555 1555 1.32 LINK C HIS B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N VAL B 2 1555 1555 1.33 LINK C ASN B 15 N MSE B 16 1555 1555 1.32 LINK C MSE B 16 N LYS B 17 1555 1555 1.33 LINK C ARG B 88 N MSE B 89 1555 1555 1.33 LINK C MSE B 89 N TYR B 90 1555 1555 1.33 LINK C GLY B 154 N MSE B 155 1555 1555 1.33 LINK C MSE B 155 N ASP B 156 1555 1555 1.33 LINK NZ LYS B 248 C4A PLP B 501 1555 1555 1.51 LINK C GLY B 257 N MSE B 258 1555 1555 1.33 LINK C MSE B 258 N VAL B 259 1555 1555 1.33 LINK C VAL B 314 N MSE B 315 1555 1555 1.33 LINK C MSE B 315 N LEU B 316 1555 1555 1.32 LINK C GLU B 352 N MSE B 353 1555 1555 1.31 LINK C MSE B 353 N PHE B 354 1555 1555 1.34 LINK C SER B 379 N MSE B 380 1555 1555 1.32 LINK C MSE B 380 N ARG B 381 1555 1555 1.33 CISPEP 1 ASP A 128 PRO A 129 0 -0.37 CISPEP 2 ASN A 187 PRO A 188 0 8.33 CISPEP 3 ASP B 128 PRO B 129 0 5.16 CISPEP 4 ASN B 187 PRO B 188 0 12.08 SITE 1 AC1 15 GLY A 105 SER A 106 GLN A 107 TYR A 131 SITE 2 AC1 15 VAL A 182 ASN A 187 ASP A 215 PRO A 217 SITE 3 AC1 15 TYR A 218 THR A 245 SER A 247 LYS A 248 SITE 4 AC1 15 ARG A 255 HOH A 641 TYR B 69 SITE 1 AC2 6 GLY A 39 ASN A 187 ARG A 381 EDO A 604 SITE 2 AC2 6 HOH A 667 TYR B 69 SITE 1 AC3 15 TYR A 69 GLY B 105 SER B 106 GLN B 107 SITE 2 AC3 15 TYR B 131 VAL B 182 ASN B 187 ASP B 215 SITE 3 AC3 15 PRO B 217 TYR B 218 THR B 245 SER B 247 SITE 4 AC3 15 LYS B 248 ARG B 255 HOH B 673 SITE 1 AC4 6 GLY B 38 GLY B 39 TYR B 131 ASN B 187 SITE 2 AC4 6 ARG B 381 HOH B 743 SITE 1 AC5 6 ASP B 216 PRO B 217 GLY B 219 ALA B 220 SITE 2 AC5 6 ASN B 244 THR B 245 SITE 1 AC6 4 ARG A 290 GLU A 293 ARG A 294 HOH A 699 SITE 1 AC7 4 THR A 93 GLY A 94 LEU A 95 HOH A 646 SITE 1 AC8 6 FMT A 617 ASP B 119 ASP B 120 TYR B 141 SITE 2 AC8 6 LEU B 142 HOH B 672 SITE 1 AC9 7 ILE A 21 LEU A 25 GLY A 37 GLY A 38 SITE 2 AC9 7 GLY A 39 UNL A 601 HOH A 667 SITE 1 BC1 4 THR B 93 GLY B 94 LEU B 95 HOH B 651 SITE 1 BC2 2 LYS A 330 TRP A 331 SITE 1 BC3 6 ASP A 216 PRO A 217 GLY A 219 ALA A 220 SITE 2 BC3 6 ASN A 244 THR A 245 SITE 1 BC4 5 ALA A 28 SER A 35 GLY A 38 LEU A 386 SITE 2 BC4 5 HOH A 685 SITE 1 BC5 4 THR B 45 VAL B 249 THR B 304 FMT B 608 SITE 1 BC6 4 ASP A 152 VAL A 191 THR A 192 HOH A 640 SITE 1 BC7 3 ILE A 92 THR A 93 HOH A 719 SITE 1 BC8 5 THR A 45 VAL A 249 THR A 304 HOH A 665 SITE 2 BC8 5 HOH A 677 SITE 1 BC9 7 PRO B 237 GLU B 238 VAL B 240 VAL B 241 SITE 2 BC9 7 GLY B 261 SER B 262 PHE B 265 SITE 1 CC1 5 ARG A 400 FMT A 618 LYS B 49 GLU B 53 SITE 2 CC1 5 TYR B 295 SITE 1 CC2 3 ASP B 152 VAL B 191 THR B 192 SITE 1 CC3 6 THR B 45 PHE B 46 LYS B 248 LEU B 250 SITE 2 CC3 6 TYR B 308 FMT B 605 SITE 1 CC4 5 ASP B 127 MSE B 155 VAL B 181 VAL B 182 SITE 2 CC4 5 THR B 193 SITE 1 CC5 5 ASP A 128 LYS A 371 VAL A 372 TYR A 373 SITE 2 CC5 5 GLU A 375 SITE 1 CC6 5 ASP A 127 VAL A 181 VAL A 182 HIS A 186 SITE 2 CC6 5 THR A 193 SITE 1 CC7 3 GLY A 94 ASP A 96 HIS A 411 SITE 1 CC8 3 LEU A 292 GLU A 293 TYR A 295 SITE 1 CC9 4 LEU A 150 GLU A 151 ASP A 152 HOH A 701 SITE 1 DC1 5 ASP A 120 TYR A 141 LEU A 142 HOH A 672 SITE 2 DC1 5 EDO B 603 SITE 1 DC2 3 GLU A 401 FMT A 611 GLU B 53 SITE 1 DC3 1 PHE A 348 SITE 1 DC4 5 LYS A 56 ASP A 325 ARG A 400 HOH A 676 SITE 2 DC4 5 GLU B 53 SITE 1 DC5 4 THR B 71 GLU B 73 GLY B 74 LYS B 79 SITE 1 DC6 5 GLN B 80 ASP B 96 GLU B 97 HIS B 411 SITE 2 DC6 5 HOH B 677 SITE 1 DC7 2 SER B 70 THR B 72 SITE 1 DC8 4 SER A 18 HOH A 809 VAL B 270 GLN B 274 SITE 1 DC9 5 PRO A 237 VAL A 240 VAL A 241 GLY A 261 SITE 2 DC9 5 SER A 262 SITE 1 EC1 3 LEU B 25 SER B 35 LEU B 386 CRYST1 165.125 165.125 68.701 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006056 0.003496 0.000000 0.00000 SCALE2 0.000000 0.006993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014556 0.00000