data_1VP8 # _entry.id 1VP8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VP8 pdb_00001vp8 10.2210/pdb1vp8/pdb RCSB RCSB002032 ? ? WWPDB D_1000002032 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-10-26 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-01-25 5 'Structure model' 1 4 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Version format compliance' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' pdbx_entry_details 8 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 1VP8 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2004-10-14 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 356685 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of hypothetical protein (NP_068944.1) from Archaeoglobus fulgidus at 1.30 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein AF0103' 22697.963 1 ? ? ? ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? 3 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 4 water nat water 18.015 155 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHH(MSE)EKKIVYFNKPGRENTEETLRLAVERAKELGIKHLVVASSYGDTA(MSE)KALE(MSE)A EGLEVVVVTYHTGFVREGENT(MSE)PPEVEEELRKRGAKIVRQSHILSGLERSISRKLGGVSRTEAIAEALRSLFGHGL KVCVEITI(MSE)AADSGAIPIEEVVAVGGRSRGADTAVVIRPAH(MSE)NNFFDAEIKEIIC(MSE)PRNKR ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMEKKIVYFNKPGRENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAEGLEVVVVTYHTGFVR EGENTMPPEVEEELRKRGAKIVRQSHILSGLERSISRKLGGVSRTEAIAEALRSLFGHGLKVCVEITIMAADSGAIPIEE VVAVGGRSRGADTAVVIRPAHMNNFFDAEIKEIICMPRNKR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 356685 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN MONONUCLEOTIDE' FMN 3 'UNKNOWN LIGAND' UNL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MSE n 1 14 GLU n 1 15 LYS n 1 16 LYS n 1 17 ILE n 1 18 VAL n 1 19 TYR n 1 20 PHE n 1 21 ASN n 1 22 LYS n 1 23 PRO n 1 24 GLY n 1 25 ARG n 1 26 GLU n 1 27 ASN n 1 28 THR n 1 29 GLU n 1 30 GLU n 1 31 THR n 1 32 LEU n 1 33 ARG n 1 34 LEU n 1 35 ALA n 1 36 VAL n 1 37 GLU n 1 38 ARG n 1 39 ALA n 1 40 LYS n 1 41 GLU n 1 42 LEU n 1 43 GLY n 1 44 ILE n 1 45 LYS n 1 46 HIS n 1 47 LEU n 1 48 VAL n 1 49 VAL n 1 50 ALA n 1 51 SER n 1 52 SER n 1 53 TYR n 1 54 GLY n 1 55 ASP n 1 56 THR n 1 57 ALA n 1 58 MSE n 1 59 LYS n 1 60 ALA n 1 61 LEU n 1 62 GLU n 1 63 MSE n 1 64 ALA n 1 65 GLU n 1 66 GLY n 1 67 LEU n 1 68 GLU n 1 69 VAL n 1 70 VAL n 1 71 VAL n 1 72 VAL n 1 73 THR n 1 74 TYR n 1 75 HIS n 1 76 THR n 1 77 GLY n 1 78 PHE n 1 79 VAL n 1 80 ARG n 1 81 GLU n 1 82 GLY n 1 83 GLU n 1 84 ASN n 1 85 THR n 1 86 MSE n 1 87 PRO n 1 88 PRO n 1 89 GLU n 1 90 VAL n 1 91 GLU n 1 92 GLU n 1 93 GLU n 1 94 LEU n 1 95 ARG n 1 96 LYS n 1 97 ARG n 1 98 GLY n 1 99 ALA n 1 100 LYS n 1 101 ILE n 1 102 VAL n 1 103 ARG n 1 104 GLN n 1 105 SER n 1 106 HIS n 1 107 ILE n 1 108 LEU n 1 109 SER n 1 110 GLY n 1 111 LEU n 1 112 GLU n 1 113 ARG n 1 114 SER n 1 115 ILE n 1 116 SER n 1 117 ARG n 1 118 LYS n 1 119 LEU n 1 120 GLY n 1 121 GLY n 1 122 VAL n 1 123 SER n 1 124 ARG n 1 125 THR n 1 126 GLU n 1 127 ALA n 1 128 ILE n 1 129 ALA n 1 130 GLU n 1 131 ALA n 1 132 LEU n 1 133 ARG n 1 134 SER n 1 135 LEU n 1 136 PHE n 1 137 GLY n 1 138 HIS n 1 139 GLY n 1 140 LEU n 1 141 LYS n 1 142 VAL n 1 143 CYS n 1 144 VAL n 1 145 GLU n 1 146 ILE n 1 147 THR n 1 148 ILE n 1 149 MSE n 1 150 ALA n 1 151 ALA n 1 152 ASP n 1 153 SER n 1 154 GLY n 1 155 ALA n 1 156 ILE n 1 157 PRO n 1 158 ILE n 1 159 GLU n 1 160 GLU n 1 161 VAL n 1 162 VAL n 1 163 ALA n 1 164 VAL n 1 165 GLY n 1 166 GLY n 1 167 ARG n 1 168 SER n 1 169 ARG n 1 170 GLY n 1 171 ALA n 1 172 ASP n 1 173 THR n 1 174 ALA n 1 175 VAL n 1 176 VAL n 1 177 ILE n 1 178 ARG n 1 179 PRO n 1 180 ALA n 1 181 HIS n 1 182 MSE n 1 183 ASN n 1 184 ASN n 1 185 PHE n 1 186 PHE n 1 187 ASP n 1 188 ALA n 1 189 GLU n 1 190 ILE n 1 191 LYS n 1 192 GLU n 1 193 ILE n 1 194 ILE n 1 195 CYS n 1 196 MSE n 1 197 PRO n 1 198 ARG n 1 199 ASN n 1 200 LYS n 1 201 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Archaeoglobus _entity_src_gen.pdbx_gene_src_gene NP_068944.1 _entity_src_gen.gene_src_species 'Archaeoglobus fulgidus' _entity_src_gen.gene_src_strain 'DSM 4304' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Archaeoglobus fulgidus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224325 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 ? ? ? A . n A 1 10 HIS 10 -2 ? ? ? A . n A 1 11 HIS 11 -1 ? ? ? A . n A 1 12 HIS 12 0 0 HIS HIS A . n A 1 13 MSE 13 1 1 MSE MSE A . n A 1 14 GLU 14 2 2 GLU GLU A . n A 1 15 LYS 15 3 3 LYS LYS A . n A 1 16 LYS 16 4 4 LYS LYS A . n A 1 17 ILE 17 5 5 ILE ILE A . n A 1 18 VAL 18 6 6 VAL VAL A . n A 1 19 TYR 19 7 7 TYR TYR A . n A 1 20 PHE 20 8 8 PHE PHE A . n A 1 21 ASN 21 9 9 ASN ASN A . n A 1 22 LYS 22 10 10 LYS LYS A . n A 1 23 PRO 23 11 11 PRO PRO A . n A 1 24 GLY 24 12 12 GLY GLY A . n A 1 25 ARG 25 13 13 ARG ARG A . n A 1 26 GLU 26 14 14 GLU GLU A . n A 1 27 ASN 27 15 15 ASN ASN A . n A 1 28 THR 28 16 16 THR THR A . n A 1 29 GLU 29 17 17 GLU GLU A . n A 1 30 GLU 30 18 18 GLU GLU A . n A 1 31 THR 31 19 19 THR THR A . n A 1 32 LEU 32 20 20 LEU LEU A . n A 1 33 ARG 33 21 21 ARG ARG A . n A 1 34 LEU 34 22 22 LEU LEU A . n A 1 35 ALA 35 23 23 ALA ALA A . n A 1 36 VAL 36 24 24 VAL VAL A . n A 1 37 GLU 37 25 25 GLU GLU A . n A 1 38 ARG 38 26 26 ARG ARG A . n A 1 39 ALA 39 27 27 ALA ALA A . n A 1 40 LYS 40 28 28 LYS LYS A . n A 1 41 GLU 41 29 29 GLU GLU A . n A 1 42 LEU 42 30 30 LEU LEU A . n A 1 43 GLY 43 31 31 GLY GLY A . n A 1 44 ILE 44 32 32 ILE ILE A . n A 1 45 LYS 45 33 33 LYS LYS A . n A 1 46 HIS 46 34 34 HIS HIS A . n A 1 47 LEU 47 35 35 LEU LEU A . n A 1 48 VAL 48 36 36 VAL VAL A . n A 1 49 VAL 49 37 37 VAL VAL A . n A 1 50 ALA 50 38 38 ALA ALA A . n A 1 51 SER 51 39 39 SER SER A . n A 1 52 SER 52 40 40 SER SER A . n A 1 53 TYR 53 41 41 TYR TYR A . n A 1 54 GLY 54 42 42 GLY GLY A . n A 1 55 ASP 55 43 43 ASP ASP A . n A 1 56 THR 56 44 44 THR THR A . n A 1 57 ALA 57 45 45 ALA ALA A . n A 1 58 MSE 58 46 46 MSE MSE A . n A 1 59 LYS 59 47 47 LYS LYS A . n A 1 60 ALA 60 48 48 ALA ALA A . n A 1 61 LEU 61 49 49 LEU LEU A . n A 1 62 GLU 62 50 50 GLU GLU A . n A 1 63 MSE 63 51 51 MSE MSE A . n A 1 64 ALA 64 52 52 ALA ALA A . n A 1 65 GLU 65 53 53 GLU GLU A . n A 1 66 GLY 66 54 54 GLY GLY A . n A 1 67 LEU 67 55 55 LEU LEU A . n A 1 68 GLU 68 56 56 GLU GLU A . n A 1 69 VAL 69 57 57 VAL VAL A . n A 1 70 VAL 70 58 58 VAL VAL A . n A 1 71 VAL 71 59 59 VAL VAL A . n A 1 72 VAL 72 60 60 VAL VAL A . n A 1 73 THR 73 61 61 THR THR A . n A 1 74 TYR 74 62 62 TYR TYR A . n A 1 75 HIS 75 63 63 HIS HIS A . n A 1 76 THR 76 64 64 THR THR A . n A 1 77 GLY 77 65 65 GLY GLY A . n A 1 78 PHE 78 66 66 PHE PHE A . n A 1 79 VAL 79 67 67 VAL VAL A . n A 1 80 ARG 80 68 68 ARG ARG A . n A 1 81 GLU 81 69 69 GLU GLU A . n A 1 82 GLY 82 70 70 GLY GLY A . n A 1 83 GLU 83 71 71 GLU GLU A . n A 1 84 ASN 84 72 72 ASN ASN A . n A 1 85 THR 85 73 73 THR THR A . n A 1 86 MSE 86 74 74 MSE MSE A . n A 1 87 PRO 87 75 75 PRO PRO A . n A 1 88 PRO 88 76 76 PRO PRO A . n A 1 89 GLU 89 77 77 GLU GLU A . n A 1 90 VAL 90 78 78 VAL VAL A . n A 1 91 GLU 91 79 79 GLU GLU A . n A 1 92 GLU 92 80 80 GLU GLU A . n A 1 93 GLU 93 81 81 GLU GLU A . n A 1 94 LEU 94 82 82 LEU LEU A . n A 1 95 ARG 95 83 83 ARG ARG A . n A 1 96 LYS 96 84 84 LYS LYS A . n A 1 97 ARG 97 85 85 ARG ARG A . n A 1 98 GLY 98 86 86 GLY GLY A . n A 1 99 ALA 99 87 87 ALA ALA A . n A 1 100 LYS 100 88 88 LYS LYS A . n A 1 101 ILE 101 89 89 ILE ILE A . n A 1 102 VAL 102 90 90 VAL VAL A . n A 1 103 ARG 103 91 91 ARG ARG A . n A 1 104 GLN 104 92 92 GLN GLN A . n A 1 105 SER 105 93 93 SER SER A . n A 1 106 HIS 106 94 94 HIS HIS A . n A 1 107 ILE 107 95 95 ILE ILE A . n A 1 108 LEU 108 96 96 LEU LEU A . n A 1 109 SER 109 97 97 SER SER A . n A 1 110 GLY 110 98 98 GLY GLY A . n A 1 111 LEU 111 99 99 LEU LEU A . n A 1 112 GLU 112 100 100 GLU GLU A . n A 1 113 ARG 113 101 101 ARG ARG A . n A 1 114 SER 114 102 102 SER SER A . n A 1 115 ILE 115 103 103 ILE ILE A . n A 1 116 SER 116 104 104 SER SER A . n A 1 117 ARG 117 105 105 ARG ARG A . n A 1 118 LYS 118 106 106 LYS LYS A . n A 1 119 LEU 119 107 107 LEU LEU A . n A 1 120 GLY 120 108 108 GLY GLY A . n A 1 121 GLY 121 109 109 GLY GLY A . n A 1 122 VAL 122 110 110 VAL VAL A . n A 1 123 SER 123 111 111 SER SER A . n A 1 124 ARG 124 112 112 ARG ARG A . n A 1 125 THR 125 113 113 THR THR A . n A 1 126 GLU 126 114 114 GLU GLU A . n A 1 127 ALA 127 115 115 ALA ALA A . n A 1 128 ILE 128 116 116 ILE ILE A . n A 1 129 ALA 129 117 117 ALA ALA A . n A 1 130 GLU 130 118 118 GLU GLU A . n A 1 131 ALA 131 119 119 ALA ALA A . n A 1 132 LEU 132 120 120 LEU LEU A . n A 1 133 ARG 133 121 121 ARG ARG A . n A 1 134 SER 134 122 122 SER SER A . n A 1 135 LEU 135 123 123 LEU LEU A . n A 1 136 PHE 136 124 124 PHE PHE A . n A 1 137 GLY 137 125 125 GLY GLY A . n A 1 138 HIS 138 126 126 HIS HIS A . n A 1 139 GLY 139 127 127 GLY GLY A . n A 1 140 LEU 140 128 128 LEU LEU A . n A 1 141 LYS 141 129 129 LYS LYS A . n A 1 142 VAL 142 130 130 VAL VAL A . n A 1 143 CYS 143 131 131 CYS CYS A . n A 1 144 VAL 144 132 132 VAL VAL A . n A 1 145 GLU 145 133 133 GLU GLU A . n A 1 146 ILE 146 134 134 ILE ILE A . n A 1 147 THR 147 135 135 THR THR A . n A 1 148 ILE 148 136 136 ILE ILE A . n A 1 149 MSE 149 137 137 MSE MSE A . n A 1 150 ALA 150 138 138 ALA ALA A . n A 1 151 ALA 151 139 139 ALA ALA A . n A 1 152 ASP 152 140 140 ASP ASP A . n A 1 153 SER 153 141 141 SER SER A . n A 1 154 GLY 154 142 142 GLY GLY A . n A 1 155 ALA 155 143 143 ALA ALA A . n A 1 156 ILE 156 144 144 ILE ILE A . n A 1 157 PRO 157 145 145 PRO PRO A . n A 1 158 ILE 158 146 146 ILE ILE A . n A 1 159 GLU 159 147 147 GLU GLU A . n A 1 160 GLU 160 148 148 GLU GLU A . n A 1 161 VAL 161 149 149 VAL VAL A . n A 1 162 VAL 162 150 150 VAL VAL A . n A 1 163 ALA 163 151 151 ALA ALA A . n A 1 164 VAL 164 152 152 VAL VAL A . n A 1 165 GLY 165 153 153 GLY GLY A . n A 1 166 GLY 166 154 154 GLY GLY A . n A 1 167 ARG 167 155 155 ARG ARG A . n A 1 168 SER 168 156 156 SER SER A . n A 1 169 ARG 169 157 157 ARG ARG A . n A 1 170 GLY 170 158 158 GLY GLY A . n A 1 171 ALA 171 159 159 ALA ALA A . n A 1 172 ASP 172 160 160 ASP ASP A . n A 1 173 THR 173 161 161 THR THR A . n A 1 174 ALA 174 162 162 ALA ALA A . n A 1 175 VAL 175 163 163 VAL VAL A . n A 1 176 VAL 176 164 164 VAL VAL A . n A 1 177 ILE 177 165 165 ILE ILE A . n A 1 178 ARG 178 166 166 ARG ARG A . n A 1 179 PRO 179 167 167 PRO PRO A . n A 1 180 ALA 180 168 168 ALA ALA A . n A 1 181 HIS 181 169 169 HIS HIS A . n A 1 182 MSE 182 170 170 MSE MSE A . n A 1 183 ASN 183 171 171 ASN ASN A . n A 1 184 ASN 184 172 172 ASN ASN A . n A 1 185 PHE 185 173 173 PHE PHE A . n A 1 186 PHE 186 174 174 PHE PHE A . n A 1 187 ASP 187 175 175 ASP ASP A . n A 1 188 ALA 188 176 176 ALA ALA A . n A 1 189 GLU 189 177 177 GLU GLU A . n A 1 190 ILE 190 178 178 ILE ILE A . n A 1 191 LYS 191 179 179 LYS LYS A . n A 1 192 GLU 192 180 180 GLU GLU A . n A 1 193 ILE 193 181 181 ILE ILE A . n A 1 194 ILE 194 182 182 ILE ILE A . n A 1 195 CYS 195 183 183 CYS CYS A . n A 1 196 MSE 196 184 184 MSE MSE A . n A 1 197 PRO 197 185 185 PRO PRO A . n A 1 198 ARG 198 186 186 ARG ARG A . n A 1 199 ASN 199 187 187 ASN ASN A . n A 1 200 LYS 200 188 188 LYS LYS A . n A 1 201 ARG 201 189 189 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN 1 500 500 FMN FMN A . C 3 UNL 1 601 601 UNL UNL A . D 4 HOH 1 602 1 HOH HOH A . D 4 HOH 2 603 2 HOH HOH A . D 4 HOH 3 604 3 HOH HOH A . D 4 HOH 4 605 4 HOH HOH A . D 4 HOH 5 606 5 HOH HOH A . D 4 HOH 6 607 6 HOH HOH A . D 4 HOH 7 608 7 HOH HOH A . D 4 HOH 8 609 8 HOH HOH A . D 4 HOH 9 610 9 HOH HOH A . D 4 HOH 10 611 10 HOH HOH A . D 4 HOH 11 612 11 HOH HOH A . D 4 HOH 12 613 12 HOH HOH A . D 4 HOH 13 614 13 HOH HOH A . D 4 HOH 14 615 14 HOH HOH A . D 4 HOH 15 616 15 HOH HOH A . D 4 HOH 16 617 16 HOH HOH A . D 4 HOH 17 618 17 HOH HOH A . D 4 HOH 18 619 18 HOH HOH A . D 4 HOH 19 620 19 HOH HOH A . D 4 HOH 20 621 20 HOH HOH A . D 4 HOH 21 622 21 HOH HOH A . D 4 HOH 22 623 22 HOH HOH A . D 4 HOH 23 624 23 HOH HOH A . D 4 HOH 24 625 24 HOH HOH A . D 4 HOH 25 626 25 HOH HOH A . D 4 HOH 26 627 26 HOH HOH A . D 4 HOH 27 628 27 HOH HOH A . D 4 HOH 28 629 28 HOH HOH A . D 4 HOH 29 630 29 HOH HOH A . D 4 HOH 30 631 30 HOH HOH A . D 4 HOH 31 632 31 HOH HOH A . D 4 HOH 32 633 32 HOH HOH A . D 4 HOH 33 634 33 HOH HOH A . D 4 HOH 34 635 34 HOH HOH A . D 4 HOH 35 636 35 HOH HOH A . D 4 HOH 36 637 36 HOH HOH A . D 4 HOH 37 638 37 HOH HOH A . D 4 HOH 38 639 38 HOH HOH A . D 4 HOH 39 640 39 HOH HOH A . D 4 HOH 40 641 40 HOH HOH A . D 4 HOH 41 642 41 HOH HOH A . D 4 HOH 42 643 42 HOH HOH A . D 4 HOH 43 644 43 HOH HOH A . D 4 HOH 44 645 44 HOH HOH A . D 4 HOH 45 646 45 HOH HOH A . D 4 HOH 46 647 46 HOH HOH A . D 4 HOH 47 648 47 HOH HOH A . D 4 HOH 48 649 48 HOH HOH A . D 4 HOH 49 650 49 HOH HOH A . D 4 HOH 50 651 50 HOH HOH A . D 4 HOH 51 652 51 HOH HOH A . D 4 HOH 52 653 52 HOH HOH A . D 4 HOH 53 654 53 HOH HOH A . D 4 HOH 54 655 54 HOH HOH A . D 4 HOH 55 656 55 HOH HOH A . D 4 HOH 56 657 56 HOH HOH A . D 4 HOH 57 658 57 HOH HOH A . D 4 HOH 58 659 58 HOH HOH A . D 4 HOH 59 660 59 HOH HOH A . D 4 HOH 60 661 60 HOH HOH A . D 4 HOH 61 662 61 HOH HOH A . D 4 HOH 62 663 62 HOH HOH A . D 4 HOH 63 664 63 HOH HOH A . D 4 HOH 64 665 64 HOH HOH A . D 4 HOH 65 666 65 HOH HOH A . D 4 HOH 66 667 66 HOH HOH A . D 4 HOH 67 668 67 HOH HOH A . D 4 HOH 68 669 68 HOH HOH A . D 4 HOH 69 670 69 HOH HOH A . D 4 HOH 70 671 70 HOH HOH A . D 4 HOH 71 672 71 HOH HOH A . D 4 HOH 72 673 72 HOH HOH A . D 4 HOH 73 674 73 HOH HOH A . D 4 HOH 74 675 74 HOH HOH A . D 4 HOH 75 676 75 HOH HOH A . D 4 HOH 76 677 76 HOH HOH A . D 4 HOH 77 678 77 HOH HOH A . D 4 HOH 78 679 78 HOH HOH A . D 4 HOH 79 680 79 HOH HOH A . D 4 HOH 80 681 80 HOH HOH A . D 4 HOH 81 682 81 HOH HOH A . D 4 HOH 82 683 82 HOH HOH A . D 4 HOH 83 684 83 HOH HOH A . D 4 HOH 84 685 84 HOH HOH A . D 4 HOH 85 686 85 HOH HOH A . D 4 HOH 86 687 86 HOH HOH A . D 4 HOH 87 688 87 HOH HOH A . D 4 HOH 88 689 88 HOH HOH A . D 4 HOH 89 690 89 HOH HOH A . D 4 HOH 90 691 90 HOH HOH A . D 4 HOH 91 692 91 HOH HOH A . D 4 HOH 92 693 92 HOH HOH A . D 4 HOH 93 694 93 HOH HOH A . D 4 HOH 94 695 94 HOH HOH A . D 4 HOH 95 696 95 HOH HOH A . D 4 HOH 96 697 96 HOH HOH A . D 4 HOH 97 698 97 HOH HOH A . D 4 HOH 98 699 98 HOH HOH A . D 4 HOH 99 700 99 HOH HOH A . D 4 HOH 100 701 100 HOH HOH A . D 4 HOH 101 702 101 HOH HOH A . D 4 HOH 102 703 102 HOH HOH A . D 4 HOH 103 704 103 HOH HOH A . D 4 HOH 104 705 104 HOH HOH A . D 4 HOH 105 706 105 HOH HOH A . D 4 HOH 106 707 106 HOH HOH A . D 4 HOH 107 708 107 HOH HOH A . D 4 HOH 108 709 108 HOH HOH A . D 4 HOH 109 710 109 HOH HOH A . D 4 HOH 110 711 110 HOH HOH A . D 4 HOH 111 712 111 HOH HOH A . D 4 HOH 112 713 112 HOH HOH A . D 4 HOH 113 714 113 HOH HOH A . D 4 HOH 114 715 114 HOH HOH A . D 4 HOH 115 716 115 HOH HOH A . D 4 HOH 116 717 116 HOH HOH A . D 4 HOH 117 718 117 HOH HOH A . D 4 HOH 118 719 118 HOH HOH A . D 4 HOH 119 720 119 HOH HOH A . D 4 HOH 120 721 120 HOH HOH A . D 4 HOH 121 722 121 HOH HOH A . D 4 HOH 122 723 122 HOH HOH A . D 4 HOH 123 724 123 HOH HOH A . D 4 HOH 124 725 124 HOH HOH A . D 4 HOH 125 726 125 HOH HOH A . D 4 HOH 126 727 126 HOH HOH A . D 4 HOH 127 728 127 HOH HOH A . D 4 HOH 128 729 128 HOH HOH A . D 4 HOH 129 730 129 HOH HOH A . D 4 HOH 130 731 130 HOH HOH A . D 4 HOH 131 732 131 HOH HOH A . D 4 HOH 132 733 132 HOH HOH A . D 4 HOH 133 734 133 HOH HOH A . D 4 HOH 134 735 134 HOH HOH A . D 4 HOH 135 736 135 HOH HOH A . D 4 HOH 136 737 136 HOH HOH A . D 4 HOH 137 738 137 HOH HOH A . D 4 HOH 138 739 138 HOH HOH A . D 4 HOH 139 740 139 HOH HOH A . D 4 HOH 140 741 140 HOH HOH A . D 4 HOH 141 742 141 HOH HOH A . D 4 HOH 142 743 142 HOH HOH A . D 4 HOH 143 744 143 HOH HOH A . D 4 HOH 144 745 144 HOH HOH A . D 4 HOH 145 746 145 HOH HOH A . D 4 HOH 146 747 146 HOH HOH A . D 4 HOH 147 748 147 HOH HOH A . D 4 HOH 148 749 148 HOH HOH A . D 4 HOH 149 750 149 HOH HOH A . D 4 HOH 150 751 150 HOH HOH A . D 4 HOH 151 752 151 HOH HOH A . D 4 HOH 152 753 152 HOH HOH A . D 4 HOH 153 754 153 HOH HOH A . D 4 HOH 154 755 154 HOH HOH A . D 4 HOH 155 756 155 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS 0 ? ND1 ? A HIS 12 ND1 2 1 Y 1 A HIS 0 ? CD2 ? A HIS 12 CD2 3 1 Y 1 A HIS 0 ? CE1 ? A HIS 12 CE1 4 1 Y 1 A HIS 0 ? NE2 ? A HIS 12 NE2 5 1 Y 1 A GLU 2 ? CD ? A GLU 14 CD 6 1 Y 1 A GLU 2 ? OE1 ? A GLU 14 OE1 7 1 Y 1 A GLU 2 ? OE2 ? A GLU 14 OE2 8 1 Y 1 A LYS 10 ? CD ? A LYS 22 CD 9 1 Y 1 A LYS 10 ? CE ? A LYS 22 CE 10 1 Y 1 A LYS 10 ? NZ ? A LYS 22 NZ 11 1 Y 1 A LYS 28 ? CD ? A LYS 40 CD 12 1 Y 1 A LYS 28 ? CE ? A LYS 40 CE 13 1 Y 1 A LYS 28 ? NZ ? A LYS 40 NZ 14 1 Y 1 A LYS 33 ? CG ? A LYS 45 CG 15 1 Y 1 A LYS 33 ? CD ? A LYS 45 CD 16 1 Y 1 A LYS 33 ? CE ? A LYS 45 CE 17 1 Y 1 A LYS 33 ? NZ ? A LYS 45 NZ 18 1 Y 1 A GLU 50 ? CD ? A GLU 62 CD 19 1 Y 1 A GLU 50 ? OE1 ? A GLU 62 OE1 20 1 Y 1 A GLU 50 ? OE2 ? A GLU 62 OE2 21 1 Y 1 A GLU 53 ? CD ? A GLU 65 CD 22 1 Y 1 A GLU 53 ? OE1 ? A GLU 65 OE1 23 1 Y 1 A GLU 53 ? OE2 ? A GLU 65 OE2 24 1 Y 1 A ARG 85 ? CZ ? A ARG 97 CZ 25 1 Y 1 A ARG 85 ? NH1 ? A ARG 97 NH1 26 1 Y 1 A ARG 85 ? NH2 ? A ARG 97 NH2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' '4.2)' ? 2 SOLVE phasing . ? 3 REFMAC refinement 5.2.0005 ? 4 CCP4 'data scaling' '(SCALA)' ? 5 # _cell.length_a 109.650 _cell.length_b 109.650 _cell.length_c 76.451 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.entry_id 1VP8 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 # _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.entry_id 1VP8 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 182 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1VP8 # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 55.45 _exptl_crystal.density_Matthews 2.78 _exptl_crystal.description ? _exptl_crystal.density_meas ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION,SITTING DROP,NANODROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '50.0% PEG-200, 0.1M HEPES pH 7.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 ? ? 1 1,2 ? ? 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.details ? _diffrn_detector.pdbx_collection_date 2004-08-28 # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_scattering_type 1 M 'Double Crystal Si(111)' 'SINGLE WAVELENGTH' 1 x-ray 2 M ? MAD 2 x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.000034 1.0 2 1.019859 1.0 3 0.979547 1.0 4 0.979667 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 8.3.1 'ALS BEAMLINE 8.3.1' 1.000034 ALS ? 2 SYNCHROTRON 8.3.1 'ALS BEAMLINE 8.3.1' ? ALS 1.019859,0.979547,0.979667 # _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.300 _reflns.d_resolution_low 24.90 _reflns.number_obs 66691 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 21.9 _reflns.B_iso_Wilson_estimate 18.46 _reflns.pdbx_redundancy 14.4 _reflns.pdbx_Rsym_value 0.085 _reflns.entry_id 1VP8 _reflns.number_all ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 1.30 _reflns_shell.d_res_low 1.33 _reflns_shell.percent_possible_all 100.0 _reflns_shell.pdbx_Rsym_value 0.974 _reflns_shell.pdbx_redundancy 10.1 _reflns_shell.number_unique_all 4852 _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.ls_d_res_high 1.30 _refine.ls_d_res_low 24.61 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_obs 63320 _refine.ls_number_reflns_R_free 3335 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_percent_reflns_obs 99.91 _refine.ls_R_factor_obs 0.15499 _refine.ls_R_factor_R_work 0.15436 _refine.ls_R_factor_R_free 0.16633 _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.B_iso_mean 14.017 _refine.aniso_B[1][1] 0.07 _refine.aniso_B[2][2] 0.07 _refine.aniso_B[3][3] -0.10 _refine.aniso_B[1][2] 0.03 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. AN UNKNOWN LIGAND HAS BEEN MODELED NEAR THE FMN GROUP.' _refine.pdbx_overall_ESU_R 0.035 _refine.pdbx_overall_ESU_R_Free 0.036 _refine.overall_SU_ML 0.022 _refine.overall_SU_B 1.004 _refine.correlation_coeff_Fo_to_Fc 0.972 _refine.correlation_coeff_Fo_to_Fc_free 0.970 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.entry_id 1VP8 _refine.ls_R_factor_all ? _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1441 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.number_atoms_solvent 155 _refine_hist.number_atoms_total 1634 _refine_hist.d_res_high 1.30 _refine_hist.d_res_low 24.61 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1563 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1529 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2118 1.620 1.997 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3547 0.973 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 189 5.952 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 67 32.570 23.284 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 306 12.887 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16 19.272 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 255 0.099 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1665 0.009 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 294 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 284 0.217 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1555 0.198 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 907 0.087 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 105 0.145 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 14 0.174 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 95 0.284 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 19 0.122 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1022 1.713 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 392 0.295 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1567 1.801 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 674 3.532 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 551 4.812 11.000 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 780 0.172 0.200 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.300 _refine_ls_shell.d_res_low 1.334 _refine_ls_shell.percent_reflns_obs 99.81 _refine_ls_shell.number_reflns_R_work 4613 _refine_ls_shell.R_factor_R_work 0.278 _refine_ls_shell.percent_reflns_R_free 4.73 _refine_ls_shell.number_reflns_R_free 229 _refine_ls_shell.R_factor_R_free 0.3 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1VP8 _struct.title ;CRYSTAL STRUCTURE OF an alpha/beta domain of a putative pyruvate kinase (AF0103) FROM ARCHAEOGLOBUS FULGIDUS DSM 4304 AT 1.30 A RESOLUTION ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;PUTATIVE PYRUVATE KINASE, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, FLAVOPROTEIN ; _struct_keywords.pdbx_keywords FLAVOPROTEIN _struct_keywords.entry_id 1VP8 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O30133_ARCFU _struct_ref.pdbx_db_accession O30133 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEKKIVYFNKPGRENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAEGLEVVVVTYHTGFVREGENTMPPEVEE ELRKRGAKIVRQSHILSGLERSISRKLGGVSRTEAIAEALRSLFGHGLKVCVEITIMAADSGAIPIEEVVAVGGRSRGAD TAVVIRPAHMNNFFDAEIKEIICMPRNKR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VP8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 201 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O30133 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 189 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 189 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VP8 MSE A 1 ? UNP O30133 ? ? 'expression tag' -11 1 1 1VP8 GLY A 2 ? UNP O30133 ? ? 'expression tag' -10 2 1 1VP8 SER A 3 ? UNP O30133 ? ? 'expression tag' -9 3 1 1VP8 ASP A 4 ? UNP O30133 ? ? 'expression tag' -8 4 1 1VP8 LYS A 5 ? UNP O30133 ? ? 'expression tag' -7 5 1 1VP8 ILE A 6 ? UNP O30133 ? ? 'expression tag' -6 6 1 1VP8 HIS A 7 ? UNP O30133 ? ? 'expression tag' -5 7 1 1VP8 HIS A 8 ? UNP O30133 ? ? 'expression tag' -4 8 1 1VP8 HIS A 9 ? UNP O30133 ? ? 'expression tag' -3 9 1 1VP8 HIS A 10 ? UNP O30133 ? ? 'expression tag' -2 10 1 1VP8 HIS A 11 ? UNP O30133 ? ? 'expression tag' -1 11 1 1VP8 HIS A 12 ? UNP O30133 ? ? 'expression tag' 0 12 1 1VP8 MSE A 13 ? UNP O30133 MET 1 'modified residue' 1 13 1 1VP8 MSE A 58 ? UNP O30133 MET 46 'modified residue' 46 14 1 1VP8 MSE A 63 ? UNP O30133 MET 51 'modified residue' 51 15 1 1VP8 MSE A 86 ? UNP O30133 MET 74 'modified residue' 74 16 1 1VP8 MSE A 149 ? UNP O30133 MET 137 'modified residue' 137 17 1 1VP8 MSE A 182 ? UNP O30133 MET 170 'modified residue' 170 18 1 1VP8 MSE A 196 ? UNP O30133 MET 184 'modified residue' 184 19 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 30710 ? 1 MORE -162 ? 1 'SSA (A^2)' 33290 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 109.6500000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 54.8250000000 -0.8660254038 -0.5000000000 0.0000000000 94.9596855250 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5000000000 -0.8660254038 0.0000000000 54.8250000000 -0.8660254038 -0.5000000000 0.0000000000 94.9596855250 0.0000000000 0.0000000000 -1.0000000000 38.2255000000 5 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 109.6500000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 38.2255000000 6 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 38.2255000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 24 ? GLU A 26 ? GLY A 12 GLU A 14 5 ? 3 HELX_P HELX_P2 2 ASN A 27 ? GLY A 43 ? ASN A 15 GLY A 31 1 ? 17 HELX_P HELX_P3 3 GLY A 54 ? ALA A 64 ? GLY A 42 ALA A 52 1 ? 11 HELX_P HELX_P4 4 PRO A 87 ? ARG A 97 ? PRO A 75 ARG A 85 1 ? 11 HELX_P HELX_P5 5 LEU A 111 ? LEU A 119 ? LEU A 99 LEU A 107 1 ? 9 HELX_P HELX_P6 6 SER A 123 ? GLY A 137 ? SER A 111 GLY A 125 1 ? 15 HELX_P HELX_P7 7 GLY A 137 ? SER A 153 ? GLY A 125 SER A 141 1 ? 17 HELX_P HELX_P8 8 ASN A 184 ? ALA A 188 ? ASN A 172 ALA A 176 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HIS 12 C ? ? ? 1_555 A MSE 13 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale2 covale both ? A MSE 13 C ? ? ? 1_555 A GLU 14 N ? ? A MSE 1 A GLU 2 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale3 covale both ? A ALA 57 C ? ? ? 1_555 A MSE 58 N ? ? A ALA 45 A MSE 46 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale4 covale both ? A MSE 58 C ? ? ? 1_555 A LYS 59 N ? ? A MSE 46 A LYS 47 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale5 covale both ? A GLU 62 C ? ? ? 1_555 A MSE 63 N ? ? A GLU 50 A MSE 51 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale6 covale both ? A MSE 63 C ? ? ? 1_555 A ALA 64 N ? ? A MSE 51 A ALA 52 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale7 covale both ? A THR 85 C ? ? ? 1_555 A MSE 86 N ? ? A THR 73 A MSE 74 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale8 covale both ? A MSE 86 C ? ? ? 1_555 A PRO 87 N ? ? A MSE 74 A PRO 75 1_555 ? ? ? ? ? ? ? 1.301 ? ? covale9 covale both ? A ILE 148 C ? ? ? 1_555 A MSE 149 N ? ? A ILE 136 A MSE 137 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale10 covale both ? A MSE 149 C ? ? ? 1_555 A ALA 150 N ? ? A MSE 137 A ALA 138 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale11 covale both ? A HIS 181 C ? ? ? 1_555 A MSE 182 N ? ? A HIS 169 A MSE 170 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale12 covale both ? A MSE 182 C ? ? ? 1_555 A ASN 183 N ? ? A MSE 170 A ASN 171 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale13 covale both ? A CYS 195 C ? ? ? 1_555 A MSE 196 N ? ? A CYS 183 A MSE 184 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale14 covale both ? A MSE 196 C ? ? ? 1_555 A PRO 197 N ? ? A MSE 184 A PRO 185 1_555 ? ? ? ? ? ? ? 1.337 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 13 ? . . . . MSE A 1 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 58 ? . . . . MSE A 46 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 63 ? . . . . MSE A 51 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE A 86 ? . . . . MSE A 74 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 5 MSE A 149 ? . . . . MSE A 137 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 6 MSE A 182 ? . . . . MSE A 170 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 7 MSE A 196 ? . . . . MSE A 184 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 18 ? PHE A 20 ? VAL A 6 PHE A 8 A 2 GLU A 189 ? PRO A 197 ? GLU A 177 PRO A 185 A 3 THR A 173 ? ARG A 178 ? THR A 161 ARG A 166 A 4 VAL A 161 ? GLY A 165 ? VAL A 149 GLY A 153 A 5 HIS A 46 ? ALA A 50 ? HIS A 34 ALA A 38 A 6 GLU A 68 ? THR A 73 ? GLU A 56 THR A 61 A 7 LYS A 100 ? ARG A 103 ? LYS A 88 ARG A 91 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 18 ? N VAL A 6 O MSE A 196 ? O MSE A 184 A 2 3 O GLU A 189 ? O GLU A 177 N ARG A 178 ? N ARG A 166 A 3 4 O ILE A 177 ? O ILE A 165 N VAL A 161 ? N VAL A 149 A 4 5 O VAL A 162 ? O VAL A 150 N VAL A 48 ? N VAL A 36 A 5 6 N LEU A 47 ? N LEU A 35 O VAL A 70 ? O VAL A 58 A 6 7 N VAL A 71 ? N VAL A 59 O VAL A 102 ? O VAL A 90 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FMN 500 ? 24 'BINDING SITE FOR RESIDUE FMN A 500' AC2 Software A UNL 601 ? 9 'BINDING SITE FOR RESIDUE UNL A 601' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 24 ALA A 50 ? ALA A 38 . ? 1_555 ? 2 AC1 24 SER A 51 ? SER A 39 . ? 1_555 ? 3 AC1 24 SER A 52 ? SER A 40 . ? 1_555 ? 4 AC1 24 TYR A 53 ? TYR A 41 . ? 1_555 ? 5 AC1 24 GLY A 54 ? GLY A 42 . ? 1_555 ? 6 AC1 24 ASP A 55 ? ASP A 43 . ? 1_555 ? 7 AC1 24 THR A 56 ? THR A 44 . ? 1_555 ? 8 AC1 24 VAL A 72 ? VAL A 60 . ? 1_555 ? 9 AC1 24 THR A 73 ? THR A 61 . ? 1_555 ? 10 AC1 24 TYR A 74 ? TYR A 62 . ? 1_555 ? 11 AC1 24 HIS A 106 ? HIS A 94 . ? 1_555 ? 12 AC1 24 ARG A 133 ? ARG A 121 . ? 1_555 ? 13 AC1 24 HIS A 138 ? HIS A 126 . ? 1_555 ? 14 AC1 24 LYS A 141 ? LYS A 129 . ? 1_555 ? 15 AC1 24 VAL A 142 ? VAL A 130 . ? 1_555 ? 16 AC1 24 GLU A 145 ? GLU A 133 . ? 1_555 ? 17 AC1 24 MSE A 149 ? MSE A 137 . ? 1_555 ? 18 AC1 24 GLY A 166 ? GLY A 154 . ? 1_555 ? 19 AC1 24 ARG A 167 ? ARG A 155 . ? 1_555 ? 20 AC1 24 SER A 168 ? SER A 156 . ? 1_555 ? 21 AC1 24 ARG A 169 ? ARG A 157 . ? 1_555 ? 22 AC1 24 GLY A 170 ? GLY A 158 . ? 1_555 ? 23 AC1 24 UNL C . ? UNL A 601 . ? 1_555 ? 24 AC1 24 HOH D . ? HOH A 631 . ? 1_555 ? 25 AC2 9 TYR A 74 ? TYR A 62 . ? 1_555 ? 26 AC2 9 PHE A 78 ? PHE A 66 . ? 1_555 ? 27 AC2 9 HIS A 106 ? HIS A 94 . ? 1_555 ? 28 AC2 9 ARG A 113 ? ARG A 101 . ? 1_555 ? 29 AC2 9 ARG A 133 ? ARG A 121 . ? 1_555 ? 30 AC2 9 LYS A 141 ? LYS A 129 . ? 1_555 ? 31 AC2 9 FMN B . ? FMN A 500 . ? 1_555 ? 32 AC2 9 HOH D . ? HOH A 613 . ? 1_555 ? 33 AC2 9 HOH D . ? HOH A 739 . ? 1_555 ? # _pdbx_entry_details.entry_id 1VP8 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A GLU 14 ? B CA A GLU 14 ? ? C A GLU 14 ? ? 97.89 110.40 -12.51 2.00 N 2 1 NE A ARG 155 ? ? CZ A ARG 155 ? ? NH1 A ARG 155 ? ? 123.40 120.30 3.10 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 97 ? ? -146.30 -54.88 2 1 SER A 156 ? ? 74.94 -58.17 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id GLU _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 14 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.075 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 58 A MSE 46 ? MET SELENOMETHIONINE 3 A MSE 63 A MSE 51 ? MET SELENOMETHIONINE 4 A MSE 86 A MSE 74 ? MET SELENOMETHIONINE 5 A MSE 149 A MSE 137 ? MET SELENOMETHIONINE 6 A MSE 182 A MSE 170 ? MET SELENOMETHIONINE 7 A MSE 196 A MSE 184 ? MET SELENOMETHIONINE # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details . _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 41.0350 _pdbx_refine_tls.origin_y 8.2710 _pdbx_refine_tls.origin_z 23.2070 _pdbx_refine_tls.T[1][1] -0.0281 _pdbx_refine_tls.T[2][2] -0.0722 _pdbx_refine_tls.T[3][3] -0.0577 _pdbx_refine_tls.T[1][2] -0.0255 _pdbx_refine_tls.T[1][3] -0.0013 _pdbx_refine_tls.T[2][3] 0.0065 _pdbx_refine_tls.L[1][1] 0.4682 _pdbx_refine_tls.L[2][2] 0.6234 _pdbx_refine_tls.L[3][3] 0.5325 _pdbx_refine_tls.L[1][2] -0.0485 _pdbx_refine_tls.L[1][3] 0.0503 _pdbx_refine_tls.L[2][3] -0.1275 _pdbx_refine_tls.S[1][1] 0.0272 _pdbx_refine_tls.S[2][2] 0.0100 _pdbx_refine_tls.S[3][3] -0.0371 _pdbx_refine_tls.S[1][2] -0.0231 _pdbx_refine_tls.S[1][3] -0.1238 _pdbx_refine_tls.S[2][3] 0.1057 _pdbx_refine_tls.S[2][1] 0.0277 _pdbx_refine_tls.S[3][1] 0.1527 _pdbx_refine_tls.S[3][2] -0.0981 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 12 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 201 _pdbx_refine_tls_group.selection ALL _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 189 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -11 ? A MSE 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A HIS -3 ? A HIS 9 10 1 Y 1 A HIS -2 ? A HIS 10 11 1 Y 1 A HIS -1 ? A HIS 11 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 FMN N1 N N N 88 FMN C2 C N N 89 FMN O2 O N N 90 FMN N3 N N N 91 FMN C4 C N N 92 FMN O4 O N N 93 FMN C4A C N N 94 FMN N5 N N N 95 FMN C5A C Y N 96 FMN C6 C Y N 97 FMN C7 C Y N 98 FMN C7M C N N 99 FMN C8 C Y N 100 FMN C8M C N N 101 FMN C9 C Y N 102 FMN C9A C Y N 103 FMN N10 N N N 104 FMN C10 C N N 105 FMN "C1'" C N N 106 FMN "C2'" C N S 107 FMN "O2'" O N N 108 FMN "C3'" C N S 109 FMN "O3'" O N N 110 FMN "C4'" C N R 111 FMN "O4'" O N N 112 FMN "C5'" C N N 113 FMN "O5'" O N N 114 FMN P P N N 115 FMN O1P O N N 116 FMN O2P O N N 117 FMN O3P O N N 118 FMN HN3 H N N 119 FMN H6 H N N 120 FMN HM71 H N N 121 FMN HM72 H N N 122 FMN HM73 H N N 123 FMN HM81 H N N 124 FMN HM82 H N N 125 FMN HM83 H N N 126 FMN H9 H N N 127 FMN "H1'1" H N N 128 FMN "H1'2" H N N 129 FMN "H2'" H N N 130 FMN "HO2'" H N N 131 FMN "H3'" H N N 132 FMN "HO3'" H N N 133 FMN "H4'" H N N 134 FMN "HO4'" H N N 135 FMN "H5'1" H N N 136 FMN "H5'2" H N N 137 FMN HOP2 H N N 138 FMN HOP3 H N N 139 GLN N N N N 140 GLN CA C N S 141 GLN C C N N 142 GLN O O N N 143 GLN CB C N N 144 GLN CG C N N 145 GLN CD C N N 146 GLN OE1 O N N 147 GLN NE2 N N N 148 GLN OXT O N N 149 GLN H H N N 150 GLN H2 H N N 151 GLN HA H N N 152 GLN HB2 H N N 153 GLN HB3 H N N 154 GLN HG2 H N N 155 GLN HG3 H N N 156 GLN HE21 H N N 157 GLN HE22 H N N 158 GLN HXT H N N 159 GLU N N N N 160 GLU CA C N S 161 GLU C C N N 162 GLU O O N N 163 GLU CB C N N 164 GLU CG C N N 165 GLU CD C N N 166 GLU OE1 O N N 167 GLU OE2 O N N 168 GLU OXT O N N 169 GLU H H N N 170 GLU H2 H N N 171 GLU HA H N N 172 GLU HB2 H N N 173 GLU HB3 H N N 174 GLU HG2 H N N 175 GLU HG3 H N N 176 GLU HE2 H N N 177 GLU HXT H N N 178 GLY N N N N 179 GLY CA C N N 180 GLY C C N N 181 GLY O O N N 182 GLY OXT O N N 183 GLY H H N N 184 GLY H2 H N N 185 GLY HA2 H N N 186 GLY HA3 H N N 187 GLY HXT H N N 188 HIS N N N N 189 HIS CA C N S 190 HIS C C N N 191 HIS O O N N 192 HIS CB C N N 193 HIS CG C Y N 194 HIS ND1 N Y N 195 HIS CD2 C Y N 196 HIS CE1 C Y N 197 HIS NE2 N Y N 198 HIS OXT O N N 199 HIS H H N N 200 HIS H2 H N N 201 HIS HA H N N 202 HIS HB2 H N N 203 HIS HB3 H N N 204 HIS HD1 H N N 205 HIS HD2 H N N 206 HIS HE1 H N N 207 HIS HE2 H N N 208 HIS HXT H N N 209 HOH O O N N 210 HOH H1 H N N 211 HOH H2 H N N 212 ILE N N N N 213 ILE CA C N S 214 ILE C C N N 215 ILE O O N N 216 ILE CB C N S 217 ILE CG1 C N N 218 ILE CG2 C N N 219 ILE CD1 C N N 220 ILE OXT O N N 221 ILE H H N N 222 ILE H2 H N N 223 ILE HA H N N 224 ILE HB H N N 225 ILE HG12 H N N 226 ILE HG13 H N N 227 ILE HG21 H N N 228 ILE HG22 H N N 229 ILE HG23 H N N 230 ILE HD11 H N N 231 ILE HD12 H N N 232 ILE HD13 H N N 233 ILE HXT H N N 234 LEU N N N N 235 LEU CA C N S 236 LEU C C N N 237 LEU O O N N 238 LEU CB C N N 239 LEU CG C N N 240 LEU CD1 C N N 241 LEU CD2 C N N 242 LEU OXT O N N 243 LEU H H N N 244 LEU H2 H N N 245 LEU HA H N N 246 LEU HB2 H N N 247 LEU HB3 H N N 248 LEU HG H N N 249 LEU HD11 H N N 250 LEU HD12 H N N 251 LEU HD13 H N N 252 LEU HD21 H N N 253 LEU HD22 H N N 254 LEU HD23 H N N 255 LEU HXT H N N 256 LYS N N N N 257 LYS CA C N S 258 LYS C C N N 259 LYS O O N N 260 LYS CB C N N 261 LYS CG C N N 262 LYS CD C N N 263 LYS CE C N N 264 LYS NZ N N N 265 LYS OXT O N N 266 LYS H H N N 267 LYS H2 H N N 268 LYS HA H N N 269 LYS HB2 H N N 270 LYS HB3 H N N 271 LYS HG2 H N N 272 LYS HG3 H N N 273 LYS HD2 H N N 274 LYS HD3 H N N 275 LYS HE2 H N N 276 LYS HE3 H N N 277 LYS HZ1 H N N 278 LYS HZ2 H N N 279 LYS HZ3 H N N 280 LYS HXT H N N 281 MET N N N N 282 MET CA C N S 283 MET C C N N 284 MET O O N N 285 MET CB C N N 286 MET CG C N N 287 MET SD S N N 288 MET CE C N N 289 MET OXT O N N 290 MET H H N N 291 MET H2 H N N 292 MET HA H N N 293 MET HB2 H N N 294 MET HB3 H N N 295 MET HG2 H N N 296 MET HG3 H N N 297 MET HE1 H N N 298 MET HE2 H N N 299 MET HE3 H N N 300 MET HXT H N N 301 MSE N N N N 302 MSE CA C N S 303 MSE C C N N 304 MSE O O N N 305 MSE OXT O N N 306 MSE CB C N N 307 MSE CG C N N 308 MSE SE SE N N 309 MSE CE C N N 310 MSE H H N N 311 MSE H2 H N N 312 MSE HA H N N 313 MSE HXT H N N 314 MSE HB2 H N N 315 MSE HB3 H N N 316 MSE HG2 H N N 317 MSE HG3 H N N 318 MSE HE1 H N N 319 MSE HE2 H N N 320 MSE HE3 H N N 321 PHE N N N N 322 PHE CA C N S 323 PHE C C N N 324 PHE O O N N 325 PHE CB C N N 326 PHE CG C Y N 327 PHE CD1 C Y N 328 PHE CD2 C Y N 329 PHE CE1 C Y N 330 PHE CE2 C Y N 331 PHE CZ C Y N 332 PHE OXT O N N 333 PHE H H N N 334 PHE H2 H N N 335 PHE HA H N N 336 PHE HB2 H N N 337 PHE HB3 H N N 338 PHE HD1 H N N 339 PHE HD2 H N N 340 PHE HE1 H N N 341 PHE HE2 H N N 342 PHE HZ H N N 343 PHE HXT H N N 344 PRO N N N N 345 PRO CA C N S 346 PRO C C N N 347 PRO O O N N 348 PRO CB C N N 349 PRO CG C N N 350 PRO CD C N N 351 PRO OXT O N N 352 PRO H H N N 353 PRO HA H N N 354 PRO HB2 H N N 355 PRO HB3 H N N 356 PRO HG2 H N N 357 PRO HG3 H N N 358 PRO HD2 H N N 359 PRO HD3 H N N 360 PRO HXT H N N 361 SER N N N N 362 SER CA C N S 363 SER C C N N 364 SER O O N N 365 SER CB C N N 366 SER OG O N N 367 SER OXT O N N 368 SER H H N N 369 SER H2 H N N 370 SER HA H N N 371 SER HB2 H N N 372 SER HB3 H N N 373 SER HG H N N 374 SER HXT H N N 375 THR N N N N 376 THR CA C N S 377 THR C C N N 378 THR O O N N 379 THR CB C N R 380 THR OG1 O N N 381 THR CG2 C N N 382 THR OXT O N N 383 THR H H N N 384 THR H2 H N N 385 THR HA H N N 386 THR HB H N N 387 THR HG1 H N N 388 THR HG21 H N N 389 THR HG22 H N N 390 THR HG23 H N N 391 THR HXT H N N 392 TYR N N N N 393 TYR CA C N S 394 TYR C C N N 395 TYR O O N N 396 TYR CB C N N 397 TYR CG C Y N 398 TYR CD1 C Y N 399 TYR CD2 C Y N 400 TYR CE1 C Y N 401 TYR CE2 C Y N 402 TYR CZ C Y N 403 TYR OH O N N 404 TYR OXT O N N 405 TYR H H N N 406 TYR H2 H N N 407 TYR HA H N N 408 TYR HB2 H N N 409 TYR HB3 H N N 410 TYR HD1 H N N 411 TYR HD2 H N N 412 TYR HE1 H N N 413 TYR HE2 H N N 414 TYR HH H N N 415 TYR HXT H N N 416 VAL N N N N 417 VAL CA C N S 418 VAL C C N N 419 VAL O O N N 420 VAL CB C N N 421 VAL CG1 C N N 422 VAL CG2 C N N 423 VAL OXT O N N 424 VAL H H N N 425 VAL H2 H N N 426 VAL HA H N N 427 VAL HB H N N 428 VAL HG11 H N N 429 VAL HG12 H N N 430 VAL HG13 H N N 431 VAL HG21 H N N 432 VAL HG22 H N N 433 VAL HG23 H N N 434 VAL HXT H N N 435 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 FMN N1 C2 sing N N 83 FMN N1 C10 doub N N 84 FMN C2 O2 doub N N 85 FMN C2 N3 sing N N 86 FMN N3 C4 sing N N 87 FMN N3 HN3 sing N N 88 FMN C4 O4 doub N N 89 FMN C4 C4A sing N N 90 FMN C4A N5 doub N N 91 FMN C4A C10 sing N N 92 FMN N5 C5A sing N N 93 FMN C5A C6 doub Y N 94 FMN C5A C9A sing Y N 95 FMN C6 C7 sing Y N 96 FMN C6 H6 sing N N 97 FMN C7 C7M sing N N 98 FMN C7 C8 doub Y N 99 FMN C7M HM71 sing N N 100 FMN C7M HM72 sing N N 101 FMN C7M HM73 sing N N 102 FMN C8 C8M sing N N 103 FMN C8 C9 sing Y N 104 FMN C8M HM81 sing N N 105 FMN C8M HM82 sing N N 106 FMN C8M HM83 sing N N 107 FMN C9 C9A doub Y N 108 FMN C9 H9 sing N N 109 FMN C9A N10 sing N N 110 FMN N10 C10 sing N N 111 FMN N10 "C1'" sing N N 112 FMN "C1'" "C2'" sing N N 113 FMN "C1'" "H1'1" sing N N 114 FMN "C1'" "H1'2" sing N N 115 FMN "C2'" "O2'" sing N N 116 FMN "C2'" "C3'" sing N N 117 FMN "C2'" "H2'" sing N N 118 FMN "O2'" "HO2'" sing N N 119 FMN "C3'" "O3'" sing N N 120 FMN "C3'" "C4'" sing N N 121 FMN "C3'" "H3'" sing N N 122 FMN "O3'" "HO3'" sing N N 123 FMN "C4'" "O4'" sing N N 124 FMN "C4'" "C5'" sing N N 125 FMN "C4'" "H4'" sing N N 126 FMN "O4'" "HO4'" sing N N 127 FMN "C5'" "O5'" sing N N 128 FMN "C5'" "H5'1" sing N N 129 FMN "C5'" "H5'2" sing N N 130 FMN "O5'" P sing N N 131 FMN P O1P doub N N 132 FMN P O2P sing N N 133 FMN P O3P sing N N 134 FMN O2P HOP2 sing N N 135 FMN O3P HOP3 sing N N 136 GLN N CA sing N N 137 GLN N H sing N N 138 GLN N H2 sing N N 139 GLN CA C sing N N 140 GLN CA CB sing N N 141 GLN CA HA sing N N 142 GLN C O doub N N 143 GLN C OXT sing N N 144 GLN CB CG sing N N 145 GLN CB HB2 sing N N 146 GLN CB HB3 sing N N 147 GLN CG CD sing N N 148 GLN CG HG2 sing N N 149 GLN CG HG3 sing N N 150 GLN CD OE1 doub N N 151 GLN CD NE2 sing N N 152 GLN NE2 HE21 sing N N 153 GLN NE2 HE22 sing N N 154 GLN OXT HXT sing N N 155 GLU N CA sing N N 156 GLU N H sing N N 157 GLU N H2 sing N N 158 GLU CA C sing N N 159 GLU CA CB sing N N 160 GLU CA HA sing N N 161 GLU C O doub N N 162 GLU C OXT sing N N 163 GLU CB CG sing N N 164 GLU CB HB2 sing N N 165 GLU CB HB3 sing N N 166 GLU CG CD sing N N 167 GLU CG HG2 sing N N 168 GLU CG HG3 sing N N 169 GLU CD OE1 doub N N 170 GLU CD OE2 sing N N 171 GLU OE2 HE2 sing N N 172 GLU OXT HXT sing N N 173 GLY N CA sing N N 174 GLY N H sing N N 175 GLY N H2 sing N N 176 GLY CA C sing N N 177 GLY CA HA2 sing N N 178 GLY CA HA3 sing N N 179 GLY C O doub N N 180 GLY C OXT sing N N 181 GLY OXT HXT sing N N 182 HIS N CA sing N N 183 HIS N H sing N N 184 HIS N H2 sing N N 185 HIS CA C sing N N 186 HIS CA CB sing N N 187 HIS CA HA sing N N 188 HIS C O doub N N 189 HIS C OXT sing N N 190 HIS CB CG sing N N 191 HIS CB HB2 sing N N 192 HIS CB HB3 sing N N 193 HIS CG ND1 sing Y N 194 HIS CG CD2 doub Y N 195 HIS ND1 CE1 doub Y N 196 HIS ND1 HD1 sing N N 197 HIS CD2 NE2 sing Y N 198 HIS CD2 HD2 sing N N 199 HIS CE1 NE2 sing Y N 200 HIS CE1 HE1 sing N N 201 HIS NE2 HE2 sing N N 202 HIS OXT HXT sing N N 203 HOH O H1 sing N N 204 HOH O H2 sing N N 205 ILE N CA sing N N 206 ILE N H sing N N 207 ILE N H2 sing N N 208 ILE CA C sing N N 209 ILE CA CB sing N N 210 ILE CA HA sing N N 211 ILE C O doub N N 212 ILE C OXT sing N N 213 ILE CB CG1 sing N N 214 ILE CB CG2 sing N N 215 ILE CB HB sing N N 216 ILE CG1 CD1 sing N N 217 ILE CG1 HG12 sing N N 218 ILE CG1 HG13 sing N N 219 ILE CG2 HG21 sing N N 220 ILE CG2 HG22 sing N N 221 ILE CG2 HG23 sing N N 222 ILE CD1 HD11 sing N N 223 ILE CD1 HD12 sing N N 224 ILE CD1 HD13 sing N N 225 ILE OXT HXT sing N N 226 LEU N CA sing N N 227 LEU N H sing N N 228 LEU N H2 sing N N 229 LEU CA C sing N N 230 LEU CA CB sing N N 231 LEU CA HA sing N N 232 LEU C O doub N N 233 LEU C OXT sing N N 234 LEU CB CG sing N N 235 LEU CB HB2 sing N N 236 LEU CB HB3 sing N N 237 LEU CG CD1 sing N N 238 LEU CG CD2 sing N N 239 LEU CG HG sing N N 240 LEU CD1 HD11 sing N N 241 LEU CD1 HD12 sing N N 242 LEU CD1 HD13 sing N N 243 LEU CD2 HD21 sing N N 244 LEU CD2 HD22 sing N N 245 LEU CD2 HD23 sing N N 246 LEU OXT HXT sing N N 247 LYS N CA sing N N 248 LYS N H sing N N 249 LYS N H2 sing N N 250 LYS CA C sing N N 251 LYS CA CB sing N N 252 LYS CA HA sing N N 253 LYS C O doub N N 254 LYS C OXT sing N N 255 LYS CB CG sing N N 256 LYS CB HB2 sing N N 257 LYS CB HB3 sing N N 258 LYS CG CD sing N N 259 LYS CG HG2 sing N N 260 LYS CG HG3 sing N N 261 LYS CD CE sing N N 262 LYS CD HD2 sing N N 263 LYS CD HD3 sing N N 264 LYS CE NZ sing N N 265 LYS CE HE2 sing N N 266 LYS CE HE3 sing N N 267 LYS NZ HZ1 sing N N 268 LYS NZ HZ2 sing N N 269 LYS NZ HZ3 sing N N 270 LYS OXT HXT sing N N 271 MET N CA sing N N 272 MET N H sing N N 273 MET N H2 sing N N 274 MET CA C sing N N 275 MET CA CB sing N N 276 MET CA HA sing N N 277 MET C O doub N N 278 MET C OXT sing N N 279 MET CB CG sing N N 280 MET CB HB2 sing N N 281 MET CB HB3 sing N N 282 MET CG SD sing N N 283 MET CG HG2 sing N N 284 MET CG HG3 sing N N 285 MET SD CE sing N N 286 MET CE HE1 sing N N 287 MET CE HE2 sing N N 288 MET CE HE3 sing N N 289 MET OXT HXT sing N N 290 MSE N CA sing N N 291 MSE N H sing N N 292 MSE N H2 sing N N 293 MSE CA C sing N N 294 MSE CA CB sing N N 295 MSE CA HA sing N N 296 MSE C O doub N N 297 MSE C OXT sing N N 298 MSE OXT HXT sing N N 299 MSE CB CG sing N N 300 MSE CB HB2 sing N N 301 MSE CB HB3 sing N N 302 MSE CG SE sing N N 303 MSE CG HG2 sing N N 304 MSE CG HG3 sing N N 305 MSE SE CE sing N N 306 MSE CE HE1 sing N N 307 MSE CE HE2 sing N N 308 MSE CE HE3 sing N N 309 PHE N CA sing N N 310 PHE N H sing N N 311 PHE N H2 sing N N 312 PHE CA C sing N N 313 PHE CA CB sing N N 314 PHE CA HA sing N N 315 PHE C O doub N N 316 PHE C OXT sing N N 317 PHE CB CG sing N N 318 PHE CB HB2 sing N N 319 PHE CB HB3 sing N N 320 PHE CG CD1 doub Y N 321 PHE CG CD2 sing Y N 322 PHE CD1 CE1 sing Y N 323 PHE CD1 HD1 sing N N 324 PHE CD2 CE2 doub Y N 325 PHE CD2 HD2 sing N N 326 PHE CE1 CZ doub Y N 327 PHE CE1 HE1 sing N N 328 PHE CE2 CZ sing Y N 329 PHE CE2 HE2 sing N N 330 PHE CZ HZ sing N N 331 PHE OXT HXT sing N N 332 PRO N CA sing N N 333 PRO N CD sing N N 334 PRO N H sing N N 335 PRO CA C sing N N 336 PRO CA CB sing N N 337 PRO CA HA sing N N 338 PRO C O doub N N 339 PRO C OXT sing N N 340 PRO CB CG sing N N 341 PRO CB HB2 sing N N 342 PRO CB HB3 sing N N 343 PRO CG CD sing N N 344 PRO CG HG2 sing N N 345 PRO CG HG3 sing N N 346 PRO CD HD2 sing N N 347 PRO CD HD3 sing N N 348 PRO OXT HXT sing N N 349 SER N CA sing N N 350 SER N H sing N N 351 SER N H2 sing N N 352 SER CA C sing N N 353 SER CA CB sing N N 354 SER CA HA sing N N 355 SER C O doub N N 356 SER C OXT sing N N 357 SER CB OG sing N N 358 SER CB HB2 sing N N 359 SER CB HB3 sing N N 360 SER OG HG sing N N 361 SER OXT HXT sing N N 362 THR N CA sing N N 363 THR N H sing N N 364 THR N H2 sing N N 365 THR CA C sing N N 366 THR CA CB sing N N 367 THR CA HA sing N N 368 THR C O doub N N 369 THR C OXT sing N N 370 THR CB OG1 sing N N 371 THR CB CG2 sing N N 372 THR CB HB sing N N 373 THR OG1 HG1 sing N N 374 THR CG2 HG21 sing N N 375 THR CG2 HG22 sing N N 376 THR CG2 HG23 sing N N 377 THR OXT HXT sing N N 378 TYR N CA sing N N 379 TYR N H sing N N 380 TYR N H2 sing N N 381 TYR CA C sing N N 382 TYR CA CB sing N N 383 TYR CA HA sing N N 384 TYR C O doub N N 385 TYR C OXT sing N N 386 TYR CB CG sing N N 387 TYR CB HB2 sing N N 388 TYR CB HB3 sing N N 389 TYR CG CD1 doub Y N 390 TYR CG CD2 sing Y N 391 TYR CD1 CE1 sing Y N 392 TYR CD1 HD1 sing N N 393 TYR CD2 CE2 doub Y N 394 TYR CD2 HD2 sing N N 395 TYR CE1 CZ doub Y N 396 TYR CE1 HE1 sing N N 397 TYR CE2 CZ sing Y N 398 TYR CE2 HE2 sing N N 399 TYR CZ OH sing N N 400 TYR OH HH sing N N 401 TYR OXT HXT sing N N 402 VAL N CA sing N N 403 VAL N H sing N N 404 VAL N H2 sing N N 405 VAL CA C sing N N 406 VAL CA CB sing N N 407 VAL CA HA sing N N 408 VAL C O doub N N 409 VAL C OXT sing N N 410 VAL CB CG1 sing N N 411 VAL CB CG2 sing N N 412 VAL CB HB sing N N 413 VAL CG1 HG11 sing N N 414 VAL CG1 HG12 sing N N 415 VAL CG1 HG13 sing N N 416 VAL CG2 HG21 sing N N 417 VAL CG2 HG22 sing N N 418 VAL CG2 HG23 sing N N 419 VAL OXT HXT sing N N 420 # _atom_sites.entry_id 1VP8 _atom_sites.fract_transf_matrix[1][1] 0.009120 _atom_sites.fract_transf_matrix[1][2] 0.005265 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010531 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013080 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SE # loop_