data_1VPA # _entry.id 1VPA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1VPA RCSB RCSB002033 WWPDB D_1000002033 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 283254 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1VPA _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2004-10-14 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (TM1393) from Thermotoga maritima at 2.67 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 # _cell.length_a 144.230 _cell.length_b 144.230 _cell.length_c 53.724 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.entry_id 1VPA _cell.pdbx_unique_axis ? _cell.Z_PDB 12 # _symmetry.space_group_name_H-M 'P 61' _symmetry.entry_id 1VPA _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 169 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase' 26870.945 2 2.7.7.60 ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 non-polymer syn "CYTIDINE-5'-TRIPHOSPHATE" 483.156 2 ? ? ? ? 4 non-polymer syn 'ACETIC ACID' 60.052 2 ? ? ? ? 5 water nat water 18.015 119 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '4-diphosphocytidyl-2C-methyl-D-erythritol synthase, MEP cytidylyltransferase, MCT' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSDKIHHHHHHMNVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEK VLGIVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVENDRIEYIP RKGVYRILTPQAFSYEILKKAHENGGEWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAREWERIP ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMNVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEK VLGIVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVENDRIEYIP RKGVYRILTPQAFSYEILKKAHENGGEWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAREWERIP ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 283254 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MET n 1 14 ASN n 1 15 VAL n 1 16 ALA n 1 17 ILE n 1 18 LEU n 1 19 LEU n 1 20 ALA n 1 21 ALA n 1 22 GLY n 1 23 LYS n 1 24 GLY n 1 25 GLU n 1 26 ARG n 1 27 MET n 1 28 SER n 1 29 GLU n 1 30 ASN n 1 31 VAL n 1 32 PRO n 1 33 LYS n 1 34 GLN n 1 35 PHE n 1 36 LEU n 1 37 GLU n 1 38 ILE n 1 39 GLU n 1 40 GLY n 1 41 ARG n 1 42 MET n 1 43 LEU n 1 44 PHE n 1 45 GLU n 1 46 TYR n 1 47 PRO n 1 48 LEU n 1 49 SER n 1 50 THR n 1 51 PHE n 1 52 LEU n 1 53 LYS n 1 54 SER n 1 55 GLU n 1 56 ALA n 1 57 ILE n 1 58 ASP n 1 59 GLY n 1 60 VAL n 1 61 VAL n 1 62 ILE n 1 63 VAL n 1 64 THR n 1 65 ARG n 1 66 ARG n 1 67 GLU n 1 68 TRP n 1 69 PHE n 1 70 GLU n 1 71 VAL n 1 72 VAL n 1 73 GLU n 1 74 LYS n 1 75 ARG n 1 76 VAL n 1 77 PHE n 1 78 HIS n 1 79 GLU n 1 80 LYS n 1 81 VAL n 1 82 LEU n 1 83 GLY n 1 84 ILE n 1 85 VAL n 1 86 GLU n 1 87 GLY n 1 88 GLY n 1 89 ASP n 1 90 THR n 1 91 ARG n 1 92 SER n 1 93 GLN n 1 94 SER n 1 95 VAL n 1 96 ARG n 1 97 SER n 1 98 ALA n 1 99 LEU n 1 100 GLU n 1 101 PHE n 1 102 LEU n 1 103 GLU n 1 104 LYS n 1 105 PHE n 1 106 SER n 1 107 PRO n 1 108 SER n 1 109 TYR n 1 110 VAL n 1 111 LEU n 1 112 VAL n 1 113 HIS n 1 114 ASP n 1 115 SER n 1 116 ALA n 1 117 ARG n 1 118 PRO n 1 119 PHE n 1 120 LEU n 1 121 ARG n 1 122 LYS n 1 123 LYS n 1 124 HIS n 1 125 VAL n 1 126 SER n 1 127 GLU n 1 128 VAL n 1 129 LEU n 1 130 ARG n 1 131 ARG n 1 132 ALA n 1 133 ARG n 1 134 GLU n 1 135 THR n 1 136 GLY n 1 137 ALA n 1 138 ALA n 1 139 THR n 1 140 LEU n 1 141 ALA n 1 142 LEU n 1 143 LYS n 1 144 ASN n 1 145 SER n 1 146 ASP n 1 147 ALA n 1 148 LEU n 1 149 VAL n 1 150 ARG n 1 151 VAL n 1 152 GLU n 1 153 ASN n 1 154 ASP n 1 155 ARG n 1 156 ILE n 1 157 GLU n 1 158 TYR n 1 159 ILE n 1 160 PRO n 1 161 ARG n 1 162 LYS n 1 163 GLY n 1 164 VAL n 1 165 TYR n 1 166 ARG n 1 167 ILE n 1 168 LEU n 1 169 THR n 1 170 PRO n 1 171 GLN n 1 172 ALA n 1 173 PHE n 1 174 SER n 1 175 TYR n 1 176 GLU n 1 177 ILE n 1 178 LEU n 1 179 LYS n 1 180 LYS n 1 181 ALA n 1 182 HIS n 1 183 GLU n 1 184 ASN n 1 185 GLY n 1 186 GLY n 1 187 GLU n 1 188 TRP n 1 189 ALA n 1 190 ASP n 1 191 ASP n 1 192 THR n 1 193 GLU n 1 194 PRO n 1 195 VAL n 1 196 GLN n 1 197 LYS n 1 198 LEU n 1 199 GLY n 1 200 VAL n 1 201 LYS n 1 202 ILE n 1 203 ALA n 1 204 LEU n 1 205 VAL n 1 206 GLU n 1 207 GLY n 1 208 ASP n 1 209 PRO n 1 210 LEU n 1 211 CYS n 1 212 PHE n 1 213 LYS n 1 214 VAL n 1 215 THR n 1 216 PHE n 1 217 LYS n 1 218 GLU n 1 219 ASP n 1 220 LEU n 1 221 GLU n 1 222 LEU n 1 223 ALA n 1 224 ARG n 1 225 ILE n 1 226 ILE n 1 227 ALA n 1 228 ARG n 1 229 GLU n 1 230 TRP n 1 231 GLU n 1 232 ARG n 1 233 ILE n 1 234 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene 'TM1393, ispD' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ISPD_THEMA _struct_ref.pdbx_db_accession Q9X1B3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKVLGIVEGGDTRS QSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALKNSDALVRVENDRIEYIPRKGVYRILTPQA FSYEILKKAHENGGEWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAREWERIP ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VPA A 13 ? 234 ? Q9X1B3 1 ? 222 ? 1 222 2 1 1VPA B 13 ? 234 ? Q9X1B3 1 ? 222 ? 1 222 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VPA MET A 1 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -11 1 1 1VPA GLY A 2 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -10 2 1 1VPA SER A 3 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -9 3 1 1VPA ASP A 4 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -8 4 1 1VPA LYS A 5 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -7 5 1 1VPA ILE A 6 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -6 6 1 1VPA HIS A 7 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -5 7 1 1VPA HIS A 8 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -4 8 1 1VPA HIS A 9 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -3 9 1 1VPA HIS A 10 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -2 10 1 1VPA HIS A 11 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -1 11 1 1VPA HIS A 12 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' 0 12 2 1VPA MET B 1 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -11 13 2 1VPA GLY B 2 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -10 14 2 1VPA SER B 3 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -9 15 2 1VPA ASP B 4 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -8 16 2 1VPA LYS B 5 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -7 17 2 1VPA ILE B 6 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -6 18 2 1VPA HIS B 7 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -5 19 2 1VPA HIS B 8 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -4 20 2 1VPA HIS B 9 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -3 21 2 1VPA HIS B 10 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -2 22 2 1VPA HIS B 11 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' -1 23 2 1VPA HIS B 12 ? UNP Q9X1B3 ? ? 'LEADER SEQUENCE' 0 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CTP non-polymer . "CYTIDINE-5'-TRIPHOSPHATE" ? 'C9 H16 N3 O14 P3' 483.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1VPA # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 61.04 _exptl_crystal.density_Matthews 3.18 _exptl_crystal.description ? _exptl_crystal.density_meas ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION,SITTING DROP,NANODROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2M Ca(OAc)2, 10.0% PEG-8000, 0.1M Imidazole pH 8.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type APS _diffrn_detector.details 'sagitally focusing 2nd crystal, Rosenbaum-Rock vertical focusing mirror' _diffrn_detector.pdbx_collection_date 2004-02-20 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Rosenbaum-Rock double-crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979127 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_wavelength 0.979127 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_wavelength_list ? # _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.67 _reflns.d_resolution_low 49.35 _reflns.number_obs 18105 _reflns.percent_possible_obs 98.28 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 11.46 _reflns.B_iso_Wilson_estimate 53.97 _reflns.pdbx_redundancy 4.51 _reflns.pdbx_Rsym_value 0.109 _reflns.entry_id 1VPA _reflns.number_all ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.67 _reflns_shell.d_res_low 2.77 _reflns_shell.percent_possible_all 98.23 _reflns_shell.pdbx_Rsym_value 0.523 _reflns_shell.pdbx_redundancy 3.66 _reflns_shell.number_unique_all 1772 _reflns_shell.meanI_over_sigI_obs 1.97 _reflns_shell.Rmerge_I_obs ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 2.67 _refine.ls_d_res_low 49.35 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_obs 16781 _refine.ls_number_reflns_R_free 1313 _refine.ls_percent_reflns_R_free 7.3 _refine.ls_percent_reflns_obs 98.26 _refine.ls_R_factor_obs 0.20234 _refine.ls_R_factor_R_work 0.19879 _refine.ls_R_factor_R_free 0.24783 _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1vgz _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.B_iso_mean 32.048 _refine.aniso_B[1][1] 1.90 _refine.aniso_B[2][2] 1.90 _refine.aniso_B[3][3] -2.85 _refine.aniso_B[1][2] 0.95 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. POOR DENSITY FOR REGION 139-143 IN CHAIN A AND B. UNACCOUNTED DIFFERENCE DENSITY NEXT TO ASP102 AND ARG105 CURRENTLY MODELED AS WATER. UNACCOUNTED DENSITY NEXT TO ARG14 CTP AND LYS201 MODELLED AS ACETATE (PRESENT IN CRYSTALIZATION SOLUTION). HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. ; _refine.pdbx_overall_ESU_R 0.687 _refine.pdbx_overall_ESU_R_Free 0.317 _refine.overall_SU_ML 0.213 _refine.overall_SU_B 18.909 _refine.correlation_coeff_Fo_to_Fc 0.933 _refine.correlation_coeff_Fo_to_Fc_free 0.887 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.entry_id 1VPA _refine.ls_R_factor_all ? _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3434 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 68 _refine_hist.number_atoms_solvent 119 _refine_hist.number_atoms_total 3621 _refine_hist.d_res_high 2.67 _refine_hist.d_res_low 49.35 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 3570 0.011 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 3336 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 4843 1.405 1.981 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 7677 0.778 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 439 6.071 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 149 35.267 22.886 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 603 16.021 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 28 13.369 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 551 0.075 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 3905 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 739 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 784 0.207 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 3548 0.179 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 2293 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 158 0.173 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 19 0.262 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 41 0.151 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 8 0.127 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2268 0.411 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 896 0.082 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3529 0.672 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1479 0.984 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1314 1.617 4.500 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1707 0.182 0.200 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 'medium positional' A 2016 0.43 0.50 1 'X-RAY DIFFRACTION' 1 ? ? ? 1 'medium thermal' A 2016 0.38 2.00 1 'X-RAY DIFFRACTION' 2 ? ? ? 1 'medium positional' A 138 0.37 0.50 2 'X-RAY DIFFRACTION' 3 ? ? ? 1 'medium thermal' A 138 0.21 2.00 2 'X-RAY DIFFRACTION' 4 ? ? ? 1 'medium positional' A 1114 0.32 0.50 3 'X-RAY DIFFRACTION' 5 ? ? ? 1 'medium thermal' A 1114 0.33 2.00 3 'X-RAY DIFFRACTION' 6 ? ? ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.670 _refine_ls_shell.d_res_low 2.739 _refine_ls_shell.percent_reflns_obs 97.34 _refine_ls_shell.number_reflns_R_work 1193 _refine_ls_shell.R_factor_R_work 0.301 _refine_ls_shell.percent_reflns_R_free 7.01 _refine_ls_shell.number_reflns_R_free 90 _refine_ls_shell.R_factor_R_free 0.382 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B 2 1 A 2 2 B 3 1 A 3 2 B # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 1 4 A 1 A 135 A MET 13 . A ALA 147 . 1 ? 2 1 4 B 1 B 135 B MET 13 . B ALA 147 . 1 ? 1 1 4 A 136 A 145 A LEU 148 . A GLU 157 . 2 ? 2 1 4 B 136 B 145 B LEU 148 . B GLU 157 . 2 ? 1 1 4 A 146 A 219 A TYR 158 . A GLU 231 . 3 ? 2 1 4 B 146 B 218 B TYR 158 . B TRP 230 . 3 ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details _struct_ncs_ens.point_group 1 ? ? 2 ? ? 3 ? ? # _struct.entry_id 1VPA _struct.title ;Crystal structure of 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (TM1393) from Thermotoga maritima at 2.67 A resolution ; _struct.pdbx_descriptor '2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (E.C.2.7.7.60)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;TM1393, 2-C-methyl-d-erythritol 4-phosphate cytidylyltransferase, structural genomics, JCSG, Joint Center for Structural Genomics, PSI, protein structure initiative, TRANSFERASE ; _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.entry_id 1VPA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 5 ? J N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 24 ? SER A 28 ? GLY A 12 SER A 16 5 ? 5 HELX_P HELX_P2 2 PRO A 32 ? PHE A 35 ? PRO A 20 PHE A 23 5 ? 4 HELX_P HELX_P3 3 PHE A 44 ? SER A 54 ? PHE A 32 SER A 42 1 ? 11 HELX_P HELX_P4 4 TRP A 68 ? LYS A 74 ? TRP A 56 LYS A 62 1 ? 7 HELX_P HELX_P5 5 THR A 90 ? GLU A 103 ? THR A 78 GLU A 91 1 ? 14 HELX_P HELX_P6 6 LYS A 104 ? SER A 106 ? LYS A 92 SER A 94 5 ? 3 HELX_P HELX_P7 7 ARG A 121 ? GLY A 136 ? ARG A 109 GLY A 124 1 ? 16 HELX_P HELX_P8 8 TYR A 175 ? GLU A 183 ? TYR A 163 GLU A 171 1 ? 9 HELX_P HELX_P9 9 ASP A 191 ? LYS A 197 ? ASP A 179 LYS A 185 1 ? 7 HELX_P HELX_P10 10 ASP A 208 ? PHE A 212 ? ASP A 196 PHE A 200 5 ? 5 HELX_P HELX_P11 11 GLU A 218 ? GLU A 231 ? GLU A 206 GLU A 219 1 ? 14 HELX_P HELX_P12 12 GLY B 24 ? SER B 28 ? GLY B 12 SER B 16 5 ? 5 HELX_P HELX_P13 13 PRO B 32 ? PHE B 35 ? PRO B 20 PHE B 23 5 ? 4 HELX_P HELX_P14 14 PHE B 44 ? SER B 54 ? PHE B 32 SER B 42 1 ? 11 HELX_P HELX_P15 15 TRP B 68 ? LYS B 74 ? TRP B 56 LYS B 62 1 ? 7 HELX_P HELX_P16 16 THR B 90 ? GLU B 103 ? THR B 78 GLU B 91 1 ? 14 HELX_P HELX_P17 17 ARG B 121 ? GLY B 136 ? ARG B 109 GLY B 124 1 ? 16 HELX_P HELX_P18 18 TYR B 175 ? GLU B 183 ? TYR B 163 GLU B 171 1 ? 9 HELX_P HELX_P19 19 ASP B 191 ? LEU B 198 ? ASP B 179 LEU B 186 1 ? 8 HELX_P HELX_P20 20 ASP B 208 ? PHE B 212 ? ASP B 196 PHE B 200 5 ? 5 HELX_P HELX_P21 21 PHE B 216 ? GLU B 218 ? PHE B 204 GLU B 206 5 ? 3 HELX_P HELX_P22 22 ASP B 219 ? ARG B 228 ? ASP B 207 ARG B 216 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 600 A HOH 749 1_555 ? ? ? ? ? ? ? 2.689 ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 D CTP . O2A ? ? A MG 600 A CTP 500 1_555 ? ? ? ? ? ? ? 2.369 ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 D CTP . O3G ? ? A MG 600 A CTP 500 1_555 ? ? ? ? ? ? ? 2.436 ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 D CTP . O1B ? ? A MG 600 A CTP 500 1_555 ? ? ? ? ? ? ? 2.580 ? metalc5 metalc ? ? F MG . MG ? ? ? 1_555 G CTP . O2A ? ? B MG 600 B CTP 500 1_555 ? ? ? ? ? ? ? 2.329 ? metalc6 metalc ? ? F MG . MG ? ? ? 1_555 G CTP . O1B ? ? B MG 600 B CTP 500 1_555 ? ? ? ? ? ? ? 2.446 ? metalc7 metalc ? ? F MG . MG ? ? ? 1_555 G CTP . O3G ? ? B MG 600 B CTP 500 1_555 ? ? ? ? ? ? ? 2.634 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 THR 169 A . ? THR 157 A PRO 170 A ? PRO 158 A 1 8.62 2 THR 169 B . ? THR 157 B PRO 170 B ? PRO 158 B 1 10.81 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? C ? 2 ? D ? 7 ? E ? 5 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? parallel D 5 6 ? parallel D 6 7 ? parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? parallel F 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 81 ? GLU A 86 ? VAL A 69 GLU A 74 A 2 GLY A 59 ? THR A 64 ? GLY A 47 THR A 52 A 3 ASN A 14 ? ALA A 20 ? ASN A 2 ALA A 8 A 4 TYR A 109 ? ASP A 114 ? TYR A 97 ASP A 102 A 5 VAL A 164 ? SER A 174 ? VAL A 152 SER A 162 A 6 ALA A 137 ? LYS A 143 ? ALA A 125 LYS A 131 A 7 ALA A 203 ? GLU A 206 ? ALA A 191 GLU A 194 B 1 VAL A 81 ? GLU A 86 ? VAL A 69 GLU A 74 B 2 GLY A 59 ? THR A 64 ? GLY A 47 THR A 52 B 3 ASN A 14 ? ALA A 20 ? ASN A 2 ALA A 8 B 4 TYR A 109 ? ASP A 114 ? TYR A 97 ASP A 102 B 5 VAL A 164 ? SER A 174 ? VAL A 152 SER A 162 B 6 ALA B 147 ? VAL B 151 ? ALA B 135 VAL B 139 B 7 ILE B 156 ? TYR B 158 ? ILE B 144 TYR B 146 C 1 GLU A 37 ? ILE A 38 ? GLU A 25 ILE A 26 C 2 ARG A 41 ? MET A 42 ? ARG A 29 MET A 30 D 1 ARG A 155 ? ILE A 159 ? ARG A 143 ILE A 147 D 2 ALA A 147 ? GLU A 152 ? ALA A 135 GLU A 140 D 3 VAL B 164 ? SER B 174 ? VAL B 152 SER B 162 D 4 TYR B 109 ? ASP B 114 ? TYR B 97 ASP B 102 D 5 ASN B 14 ? ALA B 20 ? ASN B 2 ALA B 8 D 6 GLY B 59 ? THR B 64 ? GLY B 47 THR B 52 D 7 VAL B 81 ? GLU B 86 ? VAL B 69 GLU B 74 E 1 ARG A 155 ? ILE A 159 ? ARG A 143 ILE A 147 E 2 ALA A 147 ? GLU A 152 ? ALA A 135 GLU A 140 E 3 VAL B 164 ? SER B 174 ? VAL B 152 SER B 162 E 4 ALA B 137 ? LYS B 143 ? ALA B 125 LYS B 131 E 5 ALA B 203 ? GLU B 206 ? ALA B 191 GLU B 194 F 1 GLU B 37 ? ILE B 38 ? GLU B 25 ILE B 26 F 2 ARG B 41 ? MET B 42 ? ARG B 29 MET B 30 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 85 ? O VAL A 73 N ILE A 62 ? N ILE A 50 A 2 3 O VAL A 61 ? O VAL A 49 N LEU A 18 ? N LEU A 6 A 3 4 N ILE A 17 ? N ILE A 5 O LEU A 111 ? O LEU A 99 A 4 5 N VAL A 112 ? N VAL A 100 O GLN A 171 ? O GLN A 159 A 5 6 O ARG A 166 ? O ARG A 154 N LEU A 142 ? N LEU A 130 A 6 7 N THR A 139 ? N THR A 127 O ALA A 203 ? O ALA A 191 B 1 2 O VAL A 85 ? O VAL A 73 N ILE A 62 ? N ILE A 50 B 2 3 O VAL A 61 ? O VAL A 49 N LEU A 18 ? N LEU A 6 B 3 4 N ILE A 17 ? N ILE A 5 O LEU A 111 ? O LEU A 99 B 4 5 N VAL A 112 ? N VAL A 100 O GLN A 171 ? O GLN A 159 B 5 6 N ILE A 167 ? N ILE A 155 O ALA B 147 ? O ALA B 135 B 6 7 N ARG B 150 ? N ARG B 138 O GLU B 157 ? O GLU B 145 C 1 2 N ILE A 38 ? N ILE A 26 O ARG A 41 ? O ARG A 29 D 1 2 O GLU A 157 ? O GLU A 145 N ARG A 150 ? N ARG A 138 D 2 3 N ALA A 147 ? N ALA A 135 O ILE B 167 ? O ILE B 155 D 3 4 O GLN B 171 ? O GLN B 159 N VAL B 112 ? N VAL B 100 D 4 5 O LEU B 111 ? O LEU B 99 N ILE B 17 ? N ILE B 5 D 5 6 N LEU B 18 ? N LEU B 6 O VAL B 61 ? O VAL B 49 D 6 7 N THR B 64 ? N THR B 52 O VAL B 85 ? O VAL B 73 E 1 2 O GLU A 157 ? O GLU A 145 N ARG A 150 ? N ARG A 138 E 2 3 N ALA A 147 ? N ALA A 135 O ILE B 167 ? O ILE B 155 E 3 4 O ARG B 166 ? O ARG B 154 N LEU B 142 ? N LEU B 130 E 4 5 N ALA B 141 ? N ALA B 129 O VAL B 205 ? O VAL B 193 F 1 2 N ILE B 38 ? N ILE B 26 O ARG B 41 ? O ARG B 29 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG A 600' AC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG B 600' AC3 Software ? ? ? ? 24 'BINDING SITE FOR RESIDUE CTP A 500' AC4 Software ? ? ? ? 23 'BINDING SITE FOR RESIDUE CTP B 500' AC5 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE ACY A 700' AC6 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE ACY B 700' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 CTP D . ? CTP A 500 . ? 1_555 ? 2 AC1 2 HOH I . ? HOH A 749 . ? 1_555 ? 3 AC2 1 CTP G . ? CTP B 500 . ? 1_555 ? 4 AC3 24 LEU A 19 ? LEU A 7 . ? 1_555 ? 5 AC3 24 ALA A 20 ? ALA A 8 . ? 1_555 ? 6 AC3 24 ALA A 21 ? ALA A 9 . ? 1_555 ? 7 AC3 24 GLY A 22 ? GLY A 10 . ? 1_555 ? 8 AC3 24 LYS A 23 ? LYS A 11 . ? 1_555 ? 9 AC3 24 GLY A 24 ? GLY A 12 . ? 1_555 ? 10 AC3 24 GLU A 25 ? GLU A 13 . ? 1_555 ? 11 AC3 24 ARG A 26 ? ARG A 14 . ? 1_555 ? 12 AC3 24 LYS A 33 ? LYS A 21 . ? 1_555 ? 13 AC3 24 GLY A 88 ? GLY A 76 . ? 1_555 ? 14 AC3 24 ASP A 89 ? ASP A 77 . ? 1_555 ? 15 AC3 24 THR A 90 ? THR A 78 . ? 1_555 ? 16 AC3 24 ARG A 91 ? ARG A 79 . ? 1_555 ? 17 AC3 24 SER A 94 ? SER A 82 . ? 1_555 ? 18 AC3 24 ASP A 114 ? ASP A 102 . ? 1_555 ? 19 AC3 24 SER A 115 ? SER A 103 . ? 1_555 ? 20 AC3 24 ALA A 116 ? ALA A 104 . ? 1_555 ? 21 AC3 24 LYS A 213 ? LYS A 201 . ? 1_555 ? 22 AC3 24 MG C . ? MG A 600 . ? 1_555 ? 23 AC3 24 ACY E . ? ACY A 700 . ? 1_555 ? 24 AC3 24 HOH I . ? HOH A 705 . ? 1_555 ? 25 AC3 24 HOH I . ? HOH A 751 . ? 1_555 ? 26 AC3 24 HOH I . ? HOH A 762 . ? 1_555 ? 27 AC3 24 HOH I . ? HOH A 769 . ? 1_555 ? 28 AC4 23 LEU B 19 ? LEU B 7 . ? 1_555 ? 29 AC4 23 ALA B 20 ? ALA B 8 . ? 1_555 ? 30 AC4 23 ALA B 21 ? ALA B 9 . ? 1_555 ? 31 AC4 23 GLY B 22 ? GLY B 10 . ? 1_555 ? 32 AC4 23 LYS B 23 ? LYS B 11 . ? 1_555 ? 33 AC4 23 GLY B 24 ? GLY B 12 . ? 1_555 ? 34 AC4 23 GLU B 25 ? GLU B 13 . ? 1_555 ? 35 AC4 23 ARG B 26 ? ARG B 14 . ? 1_555 ? 36 AC4 23 LYS B 33 ? LYS B 21 . ? 1_555 ? 37 AC4 23 GLY B 88 ? GLY B 76 . ? 1_555 ? 38 AC4 23 ASP B 89 ? ASP B 77 . ? 1_555 ? 39 AC4 23 THR B 90 ? THR B 78 . ? 1_555 ? 40 AC4 23 ARG B 91 ? ARG B 79 . ? 1_555 ? 41 AC4 23 SER B 94 ? SER B 82 . ? 1_555 ? 42 AC4 23 ASP B 114 ? ASP B 102 . ? 1_555 ? 43 AC4 23 SER B 115 ? SER B 103 . ? 1_555 ? 44 AC4 23 ALA B 116 ? ALA B 104 . ? 1_555 ? 45 AC4 23 LYS B 213 ? LYS B 201 . ? 1_555 ? 46 AC4 23 MG F . ? MG B 600 . ? 1_555 ? 47 AC4 23 ACY H . ? ACY B 700 . ? 1_555 ? 48 AC4 23 HOH J . ? HOH B 703 . ? 1_555 ? 49 AC4 23 HOH J . ? HOH B 719 . ? 1_555 ? 50 AC4 23 HOH J . ? HOH B 725 . ? 1_555 ? 51 AC5 7 ARG A 26 ? ARG A 14 . ? 1_555 ? 52 AC5 7 LYS A 213 ? LYS A 201 . ? 1_555 ? 53 AC5 7 CTP D . ? CTP A 500 . ? 1_555 ? 54 AC5 7 HOH I . ? HOH A 734 . ? 1_555 ? 55 AC5 7 HOH I . ? HOH A 749 . ? 1_555 ? 56 AC5 7 SER B 145 ? SER B 133 . ? 1_555 ? 57 AC5 7 ASP B 146 ? ASP B 134 . ? 1_555 ? 58 AC6 6 SER A 145 ? SER A 133 . ? 1_555 ? 59 AC6 6 ASP A 146 ? ASP A 134 . ? 1_555 ? 60 AC6 6 ARG B 26 ? ARG B 14 . ? 1_555 ? 61 AC6 6 LYS B 213 ? LYS B 201 . ? 1_555 ? 62 AC6 6 CTP G . ? CTP B 500 . ? 1_555 ? 63 AC6 6 HOH J . ? HOH B 737 . ? 1_555 ? # _atom_sites.entry_id 1VPA _atom_sites.fract_transf_matrix[1][1] 0.006933 _atom_sites.fract_transf_matrix[1][2] 0.004003 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008006 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018614 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 ? ? ? A . n A 1 10 HIS 10 -2 ? ? ? A . n A 1 11 HIS 11 -1 -1 HIS HIS A . n A 1 12 HIS 12 0 0 HIS HIS A . n A 1 13 MET 13 1 1 MET MET A . n A 1 14 ASN 14 2 2 ASN ASN A . n A 1 15 VAL 15 3 3 VAL VAL A . n A 1 16 ALA 16 4 4 ALA ALA A . n A 1 17 ILE 17 5 5 ILE ILE A . n A 1 18 LEU 18 6 6 LEU LEU A . n A 1 19 LEU 19 7 7 LEU LEU A . n A 1 20 ALA 20 8 8 ALA ALA A . n A 1 21 ALA 21 9 9 ALA ALA A . n A 1 22 GLY 22 10 10 GLY GLY A . n A 1 23 LYS 23 11 11 LYS LYS A . n A 1 24 GLY 24 12 12 GLY GLY A . n A 1 25 GLU 25 13 13 GLU GLU A . n A 1 26 ARG 26 14 14 ARG ARG A . n A 1 27 MET 27 15 15 MET MET A . n A 1 28 SER 28 16 16 SER SER A . n A 1 29 GLU 29 17 17 GLU GLU A . n A 1 30 ASN 30 18 18 ASN ASN A . n A 1 31 VAL 31 19 19 VAL VAL A . n A 1 32 PRO 32 20 20 PRO PRO A . n A 1 33 LYS 33 21 21 LYS LYS A . n A 1 34 GLN 34 22 22 GLN GLN A . n A 1 35 PHE 35 23 23 PHE PHE A . n A 1 36 LEU 36 24 24 LEU LEU A . n A 1 37 GLU 37 25 25 GLU GLU A . n A 1 38 ILE 38 26 26 ILE ILE A . n A 1 39 GLU 39 27 27 GLU GLU A . n A 1 40 GLY 40 28 28 GLY GLY A . n A 1 41 ARG 41 29 29 ARG ARG A . n A 1 42 MET 42 30 30 MET MET A . n A 1 43 LEU 43 31 31 LEU LEU A . n A 1 44 PHE 44 32 32 PHE PHE A . n A 1 45 GLU 45 33 33 GLU GLU A . n A 1 46 TYR 46 34 34 TYR TYR A . n A 1 47 PRO 47 35 35 PRO PRO A . n A 1 48 LEU 48 36 36 LEU LEU A . n A 1 49 SER 49 37 37 SER SER A . n A 1 50 THR 50 38 38 THR THR A . n A 1 51 PHE 51 39 39 PHE PHE A . n A 1 52 LEU 52 40 40 LEU LEU A . n A 1 53 LYS 53 41 41 LYS LYS A . n A 1 54 SER 54 42 42 SER SER A . n A 1 55 GLU 55 43 43 GLU GLU A . n A 1 56 ALA 56 44 44 ALA ALA A . n A 1 57 ILE 57 45 45 ILE ILE A . n A 1 58 ASP 58 46 46 ASP ASP A . n A 1 59 GLY 59 47 47 GLY GLY A . n A 1 60 VAL 60 48 48 VAL VAL A . n A 1 61 VAL 61 49 49 VAL VAL A . n A 1 62 ILE 62 50 50 ILE ILE A . n A 1 63 VAL 63 51 51 VAL VAL A . n A 1 64 THR 64 52 52 THR THR A . n A 1 65 ARG 65 53 53 ARG ARG A . n A 1 66 ARG 66 54 54 ARG ARG A . n A 1 67 GLU 67 55 55 GLU GLU A . n A 1 68 TRP 68 56 56 TRP TRP A . n A 1 69 PHE 69 57 57 PHE PHE A . n A 1 70 GLU 70 58 58 GLU GLU A . n A 1 71 VAL 71 59 59 VAL VAL A . n A 1 72 VAL 72 60 60 VAL VAL A . n A 1 73 GLU 73 61 61 GLU GLU A . n A 1 74 LYS 74 62 62 LYS LYS A . n A 1 75 ARG 75 63 63 ARG ARG A . n A 1 76 VAL 76 64 64 VAL VAL A . n A 1 77 PHE 77 65 65 PHE PHE A . n A 1 78 HIS 78 66 66 HIS HIS A . n A 1 79 GLU 79 67 67 GLU GLU A . n A 1 80 LYS 80 68 68 LYS LYS A . n A 1 81 VAL 81 69 69 VAL VAL A . n A 1 82 LEU 82 70 70 LEU LEU A . n A 1 83 GLY 83 71 71 GLY GLY A . n A 1 84 ILE 84 72 72 ILE ILE A . n A 1 85 VAL 85 73 73 VAL VAL A . n A 1 86 GLU 86 74 74 GLU GLU A . n A 1 87 GLY 87 75 75 GLY GLY A . n A 1 88 GLY 88 76 76 GLY GLY A . n A 1 89 ASP 89 77 77 ASP ASP A . n A 1 90 THR 90 78 78 THR THR A . n A 1 91 ARG 91 79 79 ARG ARG A . n A 1 92 SER 92 80 80 SER SER A . n A 1 93 GLN 93 81 81 GLN GLN A . n A 1 94 SER 94 82 82 SER SER A . n A 1 95 VAL 95 83 83 VAL VAL A . n A 1 96 ARG 96 84 84 ARG ARG A . n A 1 97 SER 97 85 85 SER SER A . n A 1 98 ALA 98 86 86 ALA ALA A . n A 1 99 LEU 99 87 87 LEU LEU A . n A 1 100 GLU 100 88 88 GLU GLU A . n A 1 101 PHE 101 89 89 PHE PHE A . n A 1 102 LEU 102 90 90 LEU LEU A . n A 1 103 GLU 103 91 91 GLU GLU A . n A 1 104 LYS 104 92 92 LYS LYS A . n A 1 105 PHE 105 93 93 PHE PHE A . n A 1 106 SER 106 94 94 SER SER A . n A 1 107 PRO 107 95 95 PRO PRO A . n A 1 108 SER 108 96 96 SER SER A . n A 1 109 TYR 109 97 97 TYR TYR A . n A 1 110 VAL 110 98 98 VAL VAL A . n A 1 111 LEU 111 99 99 LEU LEU A . n A 1 112 VAL 112 100 100 VAL VAL A . n A 1 113 HIS 113 101 101 HIS HIS A . n A 1 114 ASP 114 102 102 ASP ASP A . n A 1 115 SER 115 103 103 SER SER A . n A 1 116 ALA 116 104 104 ALA ALA A . n A 1 117 ARG 117 105 105 ARG ARG A . n A 1 118 PRO 118 106 106 PRO PRO A . n A 1 119 PHE 119 107 107 PHE PHE A . n A 1 120 LEU 120 108 108 LEU LEU A . n A 1 121 ARG 121 109 109 ARG ARG A . n A 1 122 LYS 122 110 110 LYS LYS A . n A 1 123 LYS 123 111 111 LYS LYS A . n A 1 124 HIS 124 112 112 HIS HIS A . n A 1 125 VAL 125 113 113 VAL VAL A . n A 1 126 SER 126 114 114 SER SER A . n A 1 127 GLU 127 115 115 GLU GLU A . n A 1 128 VAL 128 116 116 VAL VAL A . n A 1 129 LEU 129 117 117 LEU LEU A . n A 1 130 ARG 130 118 118 ARG ARG A . n A 1 131 ARG 131 119 119 ARG ARG A . n A 1 132 ALA 132 120 120 ALA ALA A . n A 1 133 ARG 133 121 121 ARG ARG A . n A 1 134 GLU 134 122 122 GLU GLU A . n A 1 135 THR 135 123 123 THR THR A . n A 1 136 GLY 136 124 124 GLY GLY A . n A 1 137 ALA 137 125 125 ALA ALA A . n A 1 138 ALA 138 126 126 ALA ALA A . n A 1 139 THR 139 127 127 THR THR A . n A 1 140 LEU 140 128 128 LEU LEU A . n A 1 141 ALA 141 129 129 ALA ALA A . n A 1 142 LEU 142 130 130 LEU LEU A . n A 1 143 LYS 143 131 131 LYS LYS A . n A 1 144 ASN 144 132 132 ASN ASN A . n A 1 145 SER 145 133 133 SER SER A . n A 1 146 ASP 146 134 134 ASP ASP A . n A 1 147 ALA 147 135 135 ALA ALA A . n A 1 148 LEU 148 136 136 LEU LEU A . n A 1 149 VAL 149 137 137 VAL VAL A . n A 1 150 ARG 150 138 138 ARG ARG A . n A 1 151 VAL 151 139 139 VAL VAL A . n A 1 152 GLU 152 140 140 GLU GLU A . n A 1 153 ASN 153 141 141 ASN ASN A . n A 1 154 ASP 154 142 142 ASP ASP A . n A 1 155 ARG 155 143 143 ARG ARG A . n A 1 156 ILE 156 144 144 ILE ILE A . n A 1 157 GLU 157 145 145 GLU GLU A . n A 1 158 TYR 158 146 146 TYR TYR A . n A 1 159 ILE 159 147 147 ILE ILE A . n A 1 160 PRO 160 148 148 PRO PRO A . n A 1 161 ARG 161 149 149 ARG ARG A . n A 1 162 LYS 162 150 150 LYS LYS A . n A 1 163 GLY 163 151 151 GLY GLY A . n A 1 164 VAL 164 152 152 VAL VAL A . n A 1 165 TYR 165 153 153 TYR TYR A . n A 1 166 ARG 166 154 154 ARG ARG A . n A 1 167 ILE 167 155 155 ILE ILE A . n A 1 168 LEU 168 156 156 LEU LEU A . n A 1 169 THR 169 157 157 THR THR A . n A 1 170 PRO 170 158 158 PRO PRO A . n A 1 171 GLN 171 159 159 GLN GLN A . n A 1 172 ALA 172 160 160 ALA ALA A . n A 1 173 PHE 173 161 161 PHE PHE A . n A 1 174 SER 174 162 162 SER SER A . n A 1 175 TYR 175 163 163 TYR TYR A . n A 1 176 GLU 176 164 164 GLU GLU A . n A 1 177 ILE 177 165 165 ILE ILE A . n A 1 178 LEU 178 166 166 LEU LEU A . n A 1 179 LYS 179 167 167 LYS LYS A . n A 1 180 LYS 180 168 168 LYS LYS A . n A 1 181 ALA 181 169 169 ALA ALA A . n A 1 182 HIS 182 170 170 HIS HIS A . n A 1 183 GLU 183 171 171 GLU GLU A . n A 1 184 ASN 184 172 172 ASN ASN A . n A 1 185 GLY 185 173 173 GLY GLY A . n A 1 186 GLY 186 174 174 GLY GLY A . n A 1 187 GLU 187 175 175 GLU GLU A . n A 1 188 TRP 188 176 176 TRP TRP A . n A 1 189 ALA 189 177 177 ALA ALA A . n A 1 190 ASP 190 178 178 ASP ASP A . n A 1 191 ASP 191 179 179 ASP ASP A . n A 1 192 THR 192 180 180 THR THR A . n A 1 193 GLU 193 181 181 GLU GLU A . n A 1 194 PRO 194 182 182 PRO PRO A . n A 1 195 VAL 195 183 183 VAL VAL A . n A 1 196 GLN 196 184 184 GLN GLN A . n A 1 197 LYS 197 185 185 LYS LYS A . n A 1 198 LEU 198 186 186 LEU LEU A . n A 1 199 GLY 199 187 187 GLY GLY A . n A 1 200 VAL 200 188 188 VAL VAL A . n A 1 201 LYS 201 189 189 LYS LYS A . n A 1 202 ILE 202 190 190 ILE ILE A . n A 1 203 ALA 203 191 191 ALA ALA A . n A 1 204 LEU 204 192 192 LEU LEU A . n A 1 205 VAL 205 193 193 VAL VAL A . n A 1 206 GLU 206 194 194 GLU GLU A . n A 1 207 GLY 207 195 195 GLY GLY A . n A 1 208 ASP 208 196 196 ASP ASP A . n A 1 209 PRO 209 197 197 PRO PRO A . n A 1 210 LEU 210 198 198 LEU LEU A . n A 1 211 CYS 211 199 199 CYS CYS A . n A 1 212 PHE 212 200 200 PHE PHE A . n A 1 213 LYS 213 201 201 LYS LYS A . n A 1 214 VAL 214 202 202 VAL VAL A . n A 1 215 THR 215 203 203 THR THR A . n A 1 216 PHE 216 204 204 PHE PHE A . n A 1 217 LYS 217 205 205 LYS LYS A . n A 1 218 GLU 218 206 206 GLU GLU A . n A 1 219 ASP 219 207 207 ASP ASP A . n A 1 220 LEU 220 208 208 LEU LEU A . n A 1 221 GLU 221 209 209 GLU GLU A . n A 1 222 LEU 222 210 210 LEU LEU A . n A 1 223 ALA 223 211 211 ALA ALA A . n A 1 224 ARG 224 212 212 ARG ARG A . n A 1 225 ILE 225 213 213 ILE ILE A . n A 1 226 ILE 226 214 214 ILE ILE A . n A 1 227 ALA 227 215 215 ALA ALA A . n A 1 228 ARG 228 216 216 ARG ARG A . n A 1 229 GLU 229 217 217 GLU GLU A . n A 1 230 TRP 230 218 218 TRP TRP A . n A 1 231 GLU 231 219 219 GLU GLU A . n A 1 232 ARG 232 220 ? ? ? A . n A 1 233 ILE 233 221 ? ? ? A . n A 1 234 PRO 234 222 ? ? ? A . n B 1 1 MET 1 -11 ? ? ? B . n B 1 2 GLY 2 -10 ? ? ? B . n B 1 3 SER 3 -9 ? ? ? B . n B 1 4 ASP 4 -8 ? ? ? B . n B 1 5 LYS 5 -7 ? ? ? B . n B 1 6 ILE 6 -6 ? ? ? B . n B 1 7 HIS 7 -5 ? ? ? B . n B 1 8 HIS 8 -4 ? ? ? B . n B 1 9 HIS 9 -3 ? ? ? B . n B 1 10 HIS 10 -2 ? ? ? B . n B 1 11 HIS 11 -1 -1 HIS HIS B . n B 1 12 HIS 12 0 0 HIS HIS B . n B 1 13 MET 13 1 1 MET MET B . n B 1 14 ASN 14 2 2 ASN ASN B . n B 1 15 VAL 15 3 3 VAL VAL B . n B 1 16 ALA 16 4 4 ALA ALA B . n B 1 17 ILE 17 5 5 ILE ILE B . n B 1 18 LEU 18 6 6 LEU LEU B . n B 1 19 LEU 19 7 7 LEU LEU B . n B 1 20 ALA 20 8 8 ALA ALA B . n B 1 21 ALA 21 9 9 ALA ALA B . n B 1 22 GLY 22 10 10 GLY GLY B . n B 1 23 LYS 23 11 11 LYS LYS B . n B 1 24 GLY 24 12 12 GLY GLY B . n B 1 25 GLU 25 13 13 GLU GLU B . n B 1 26 ARG 26 14 14 ARG ARG B . n B 1 27 MET 27 15 15 MET MET B . n B 1 28 SER 28 16 16 SER SER B . n B 1 29 GLU 29 17 17 GLU GLU B . n B 1 30 ASN 30 18 18 ASN ASN B . n B 1 31 VAL 31 19 19 VAL VAL B . n B 1 32 PRO 32 20 20 PRO PRO B . n B 1 33 LYS 33 21 21 LYS LYS B . n B 1 34 GLN 34 22 22 GLN GLN B . n B 1 35 PHE 35 23 23 PHE PHE B . n B 1 36 LEU 36 24 24 LEU LEU B . n B 1 37 GLU 37 25 25 GLU GLU B . n B 1 38 ILE 38 26 26 ILE ILE B . n B 1 39 GLU 39 27 27 GLU GLU B . n B 1 40 GLY 40 28 28 GLY GLY B . n B 1 41 ARG 41 29 29 ARG ARG B . n B 1 42 MET 42 30 30 MET MET B . n B 1 43 LEU 43 31 31 LEU LEU B . n B 1 44 PHE 44 32 32 PHE PHE B . n B 1 45 GLU 45 33 33 GLU GLU B . n B 1 46 TYR 46 34 34 TYR TYR B . n B 1 47 PRO 47 35 35 PRO PRO B . n B 1 48 LEU 48 36 36 LEU LEU B . n B 1 49 SER 49 37 37 SER SER B . n B 1 50 THR 50 38 38 THR THR B . n B 1 51 PHE 51 39 39 PHE PHE B . n B 1 52 LEU 52 40 40 LEU LEU B . n B 1 53 LYS 53 41 41 LYS LYS B . n B 1 54 SER 54 42 42 SER SER B . n B 1 55 GLU 55 43 43 GLU GLU B . n B 1 56 ALA 56 44 44 ALA ALA B . n B 1 57 ILE 57 45 45 ILE ILE B . n B 1 58 ASP 58 46 46 ASP ASP B . n B 1 59 GLY 59 47 47 GLY GLY B . n B 1 60 VAL 60 48 48 VAL VAL B . n B 1 61 VAL 61 49 49 VAL VAL B . n B 1 62 ILE 62 50 50 ILE ILE B . n B 1 63 VAL 63 51 51 VAL VAL B . n B 1 64 THR 64 52 52 THR THR B . n B 1 65 ARG 65 53 53 ARG ARG B . n B 1 66 ARG 66 54 54 ARG ARG B . n B 1 67 GLU 67 55 55 GLU GLU B . n B 1 68 TRP 68 56 56 TRP TRP B . n B 1 69 PHE 69 57 57 PHE PHE B . n B 1 70 GLU 70 58 58 GLU GLU B . n B 1 71 VAL 71 59 59 VAL VAL B . n B 1 72 VAL 72 60 60 VAL VAL B . n B 1 73 GLU 73 61 61 GLU GLU B . n B 1 74 LYS 74 62 62 LYS LYS B . n B 1 75 ARG 75 63 63 ARG ARG B . n B 1 76 VAL 76 64 64 VAL VAL B . n B 1 77 PHE 77 65 65 PHE PHE B . n B 1 78 HIS 78 66 66 HIS HIS B . n B 1 79 GLU 79 67 67 GLU GLU B . n B 1 80 LYS 80 68 68 LYS LYS B . n B 1 81 VAL 81 69 69 VAL VAL B . n B 1 82 LEU 82 70 70 LEU LEU B . n B 1 83 GLY 83 71 71 GLY GLY B . n B 1 84 ILE 84 72 72 ILE ILE B . n B 1 85 VAL 85 73 73 VAL VAL B . n B 1 86 GLU 86 74 74 GLU GLU B . n B 1 87 GLY 87 75 75 GLY GLY B . n B 1 88 GLY 88 76 76 GLY GLY B . n B 1 89 ASP 89 77 77 ASP ASP B . n B 1 90 THR 90 78 78 THR THR B . n B 1 91 ARG 91 79 79 ARG ARG B . n B 1 92 SER 92 80 80 SER SER B . n B 1 93 GLN 93 81 81 GLN GLN B . n B 1 94 SER 94 82 82 SER SER B . n B 1 95 VAL 95 83 83 VAL VAL B . n B 1 96 ARG 96 84 84 ARG ARG B . n B 1 97 SER 97 85 85 SER SER B . n B 1 98 ALA 98 86 86 ALA ALA B . n B 1 99 LEU 99 87 87 LEU LEU B . n B 1 100 GLU 100 88 88 GLU GLU B . n B 1 101 PHE 101 89 89 PHE PHE B . n B 1 102 LEU 102 90 90 LEU LEU B . n B 1 103 GLU 103 91 91 GLU GLU B . n B 1 104 LYS 104 92 92 LYS LYS B . n B 1 105 PHE 105 93 93 PHE PHE B . n B 1 106 SER 106 94 94 SER SER B . n B 1 107 PRO 107 95 95 PRO PRO B . n B 1 108 SER 108 96 96 SER SER B . n B 1 109 TYR 109 97 97 TYR TYR B . n B 1 110 VAL 110 98 98 VAL VAL B . n B 1 111 LEU 111 99 99 LEU LEU B . n B 1 112 VAL 112 100 100 VAL VAL B . n B 1 113 HIS 113 101 101 HIS HIS B . n B 1 114 ASP 114 102 102 ASP ASP B . n B 1 115 SER 115 103 103 SER SER B . n B 1 116 ALA 116 104 104 ALA ALA B . n B 1 117 ARG 117 105 105 ARG ARG B . n B 1 118 PRO 118 106 106 PRO PRO B . n B 1 119 PHE 119 107 107 PHE PHE B . n B 1 120 LEU 120 108 108 LEU LEU B . n B 1 121 ARG 121 109 109 ARG ARG B . n B 1 122 LYS 122 110 110 LYS LYS B . n B 1 123 LYS 123 111 111 LYS LYS B . n B 1 124 HIS 124 112 112 HIS HIS B . n B 1 125 VAL 125 113 113 VAL VAL B . n B 1 126 SER 126 114 114 SER SER B . n B 1 127 GLU 127 115 115 GLU GLU B . n B 1 128 VAL 128 116 116 VAL VAL B . n B 1 129 LEU 129 117 117 LEU LEU B . n B 1 130 ARG 130 118 118 ARG ARG B . n B 1 131 ARG 131 119 119 ARG ARG B . n B 1 132 ALA 132 120 120 ALA ALA B . n B 1 133 ARG 133 121 121 ARG ARG B . n B 1 134 GLU 134 122 122 GLU GLU B . n B 1 135 THR 135 123 123 THR THR B . n B 1 136 GLY 136 124 124 GLY GLY B . n B 1 137 ALA 137 125 125 ALA ALA B . n B 1 138 ALA 138 126 126 ALA ALA B . n B 1 139 THR 139 127 127 THR THR B . n B 1 140 LEU 140 128 128 LEU LEU B . n B 1 141 ALA 141 129 129 ALA ALA B . n B 1 142 LEU 142 130 130 LEU LEU B . n B 1 143 LYS 143 131 131 LYS LYS B . n B 1 144 ASN 144 132 132 ASN ASN B . n B 1 145 SER 145 133 133 SER SER B . n B 1 146 ASP 146 134 134 ASP ASP B . n B 1 147 ALA 147 135 135 ALA ALA B . n B 1 148 LEU 148 136 136 LEU LEU B . n B 1 149 VAL 149 137 137 VAL VAL B . n B 1 150 ARG 150 138 138 ARG ARG B . n B 1 151 VAL 151 139 139 VAL VAL B . n B 1 152 GLU 152 140 140 GLU GLU B . n B 1 153 ASN 153 141 141 ASN ASN B . n B 1 154 ASP 154 142 142 ASP ASP B . n B 1 155 ARG 155 143 143 ARG ARG B . n B 1 156 ILE 156 144 144 ILE ILE B . n B 1 157 GLU 157 145 145 GLU GLU B . n B 1 158 TYR 158 146 146 TYR TYR B . n B 1 159 ILE 159 147 147 ILE ILE B . n B 1 160 PRO 160 148 148 PRO PRO B . n B 1 161 ARG 161 149 149 ARG ARG B . n B 1 162 LYS 162 150 150 LYS LYS B . n B 1 163 GLY 163 151 151 GLY GLY B . n B 1 164 VAL 164 152 152 VAL VAL B . n B 1 165 TYR 165 153 153 TYR TYR B . n B 1 166 ARG 166 154 154 ARG ARG B . n B 1 167 ILE 167 155 155 ILE ILE B . n B 1 168 LEU 168 156 156 LEU LEU B . n B 1 169 THR 169 157 157 THR THR B . n B 1 170 PRO 170 158 158 PRO PRO B . n B 1 171 GLN 171 159 159 GLN GLN B . n B 1 172 ALA 172 160 160 ALA ALA B . n B 1 173 PHE 173 161 161 PHE PHE B . n B 1 174 SER 174 162 162 SER SER B . n B 1 175 TYR 175 163 163 TYR TYR B . n B 1 176 GLU 176 164 164 GLU GLU B . n B 1 177 ILE 177 165 165 ILE ILE B . n B 1 178 LEU 178 166 166 LEU LEU B . n B 1 179 LYS 179 167 167 LYS LYS B . n B 1 180 LYS 180 168 168 LYS LYS B . n B 1 181 ALA 181 169 169 ALA ALA B . n B 1 182 HIS 182 170 170 HIS HIS B . n B 1 183 GLU 183 171 171 GLU GLU B . n B 1 184 ASN 184 172 172 ASN ASN B . n B 1 185 GLY 185 173 173 GLY GLY B . n B 1 186 GLY 186 174 174 GLY GLY B . n B 1 187 GLU 187 175 175 GLU GLU B . n B 1 188 TRP 188 176 176 TRP TRP B . n B 1 189 ALA 189 177 177 ALA ALA B . n B 1 190 ASP 190 178 178 ASP ASP B . n B 1 191 ASP 191 179 179 ASP ASP B . n B 1 192 THR 192 180 180 THR THR B . n B 1 193 GLU 193 181 181 GLU GLU B . n B 1 194 PRO 194 182 182 PRO PRO B . n B 1 195 VAL 195 183 183 VAL VAL B . n B 1 196 GLN 196 184 184 GLN GLN B . n B 1 197 LYS 197 185 185 LYS LYS B . n B 1 198 LEU 198 186 186 LEU LEU B . n B 1 199 GLY 199 187 187 GLY GLY B . n B 1 200 VAL 200 188 188 VAL VAL B . n B 1 201 LYS 201 189 189 LYS LYS B . n B 1 202 ILE 202 190 190 ILE ILE B . n B 1 203 ALA 203 191 191 ALA ALA B . n B 1 204 LEU 204 192 192 LEU LEU B . n B 1 205 VAL 205 193 193 VAL VAL B . n B 1 206 GLU 206 194 194 GLU GLU B . n B 1 207 GLY 207 195 195 GLY GLY B . n B 1 208 ASP 208 196 196 ASP ASP B . n B 1 209 PRO 209 197 197 PRO PRO B . n B 1 210 LEU 210 198 198 LEU LEU B . n B 1 211 CYS 211 199 199 CYS CYS B . n B 1 212 PHE 212 200 200 PHE PHE B . n B 1 213 LYS 213 201 201 LYS LYS B . n B 1 214 VAL 214 202 202 VAL VAL B . n B 1 215 THR 215 203 203 THR THR B . n B 1 216 PHE 216 204 204 PHE PHE B . n B 1 217 LYS 217 205 205 LYS LYS B . n B 1 218 GLU 218 206 206 GLU GLU B . n B 1 219 ASP 219 207 207 ASP ASP B . n B 1 220 LEU 220 208 208 LEU LEU B . n B 1 221 GLU 221 209 209 GLU GLU B . n B 1 222 LEU 222 210 210 LEU LEU B . n B 1 223 ALA 223 211 211 ALA ALA B . n B 1 224 ARG 224 212 212 ARG ARG B . n B 1 225 ILE 225 213 213 ILE ILE B . n B 1 226 ILE 226 214 214 ILE ILE B . n B 1 227 ALA 227 215 215 ALA ALA B . n B 1 228 ARG 228 216 216 ARG ARG B . n B 1 229 GLU 229 217 217 GLU GLU B . n B 1 230 TRP 230 218 218 TRP TRP B . n B 1 231 GLU 231 219 ? ? ? B . n B 1 232 ARG 232 220 ? ? ? B . n B 1 233 ILE 233 221 ? ? ? B . n B 1 234 PRO 234 222 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6110 ? 1 MORE -47 ? 1 'SSA (A^2)' 17830 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? I HOH . ? A HOH 749 ? 1_555 MG ? C MG . ? A MG 600 ? 1_555 O2A ? D CTP . ? A CTP 500 ? 1_555 81.0 ? 2 O ? I HOH . ? A HOH 749 ? 1_555 MG ? C MG . ? A MG 600 ? 1_555 O3G ? D CTP . ? A CTP 500 ? 1_555 101.0 ? 3 O2A ? D CTP . ? A CTP 500 ? 1_555 MG ? C MG . ? A MG 600 ? 1_555 O3G ? D CTP . ? A CTP 500 ? 1_555 85.3 ? 4 O ? I HOH . ? A HOH 749 ? 1_555 MG ? C MG . ? A MG 600 ? 1_555 O1B ? D CTP . ? A CTP 500 ? 1_555 164.8 ? 5 O2A ? D CTP . ? A CTP 500 ? 1_555 MG ? C MG . ? A MG 600 ? 1_555 O1B ? D CTP . ? A CTP 500 ? 1_555 85.2 ? 6 O3G ? D CTP . ? A CTP 500 ? 1_555 MG ? C MG . ? A MG 600 ? 1_555 O1B ? D CTP . ? A CTP 500 ? 1_555 84.2 ? 7 O2A ? G CTP . ? B CTP 500 ? 1_555 MG ? F MG . ? B MG 600 ? 1_555 O1B ? G CTP . ? B CTP 500 ? 1_555 83.5 ? 8 O2A ? G CTP . ? B CTP 500 ? 1_555 MG ? F MG . ? B MG 600 ? 1_555 O3G ? G CTP . ? B CTP 500 ? 1_555 87.2 ? 9 O1B ? G CTP . ? B CTP 500 ? 1_555 MG ? F MG . ? B MG 600 ? 1_555 O3G ? G CTP . ? B CTP 500 ? 1_555 85.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-02 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 . refined -9.5182 118.4907 -7.6958 -0.1604 -0.1655 -0.0772 -0.0301 0.0003 -0.0252 3.3020 1.9374 1.8659 0.7326 -0.5502 -0.3547 0.0410 0.0365 -0.0775 0.1991 -0.2372 -0.1528 -0.0644 0.1025 0.1967 'X-RAY DIFFRACTION' 2 . refined -36.1449 117.3161 10.7784 0.3235 0.0135 0.1204 0.0101 0.0892 0.0459 34.6953 26.5539 7.5791 -10.3424 -9.0628 13.7616 0.0254 -0.2704 0.2450 -1.5617 0.6090 1.2935 0.9742 -1.1225 -0.1063 'X-RAY DIFFRACTION' 3 . refined -21.4555 117.5078 -5.5236 -0.1456 -0.0998 -0.1034 -0.0528 -0.0383 0.0031 2.1879 3.2666 2.3441 0.2717 0.2528 -0.6837 0.0536 0.0291 -0.0827 0.0565 -0.2070 0.0126 -0.0356 0.1280 -0.0658 'X-RAY DIFFRACTION' 4 . refined -34.7962 92.1686 6.9232 0.0050 -0.0152 -0.0411 -0.0716 -0.0284 0.0364 2.2418 4.8851 0.5181 1.8705 -0.1232 0.3268 0.2151 -0.2854 0.0703 -0.2530 -0.2617 -0.2023 0.5031 0.2354 0.0393 'X-RAY DIFFRACTION' 5 . refined -34.4000 120.5216 -8.3803 -0.1353 0.3486 0.2700 0.0513 -0.0038 0.1627 7.8673 38.6958 8.7123 -0.6962 7.9298 -5.9743 0.3661 0.5851 -0.9513 0.2086 0.5069 1.8251 -1.4480 -0.7626 -1.9344 'X-RAY DIFFRACTION' 6 . refined -33.4648 104.8904 6.4067 0.0083 -0.0466 -0.0612 -0.0697 -0.0087 0.0150 2.1988 4.2603 2.1923 2.0084 -0.3784 1.2653 0.2819 -0.1780 -0.1039 0.0286 0.1091 0.0563 0.6479 0.1984 -0.0869 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 13 A 147 ALL A 1 A 135 'X-RAY DIFFRACTION' ? 2 2 A 148 A 156 ALL A 136 A 144 'X-RAY DIFFRACTION' ? 3 3 A 157 A 231 ALL A 145 A 219 'X-RAY DIFFRACTION' ? 4 4 B 13 B 147 ALL B 1 B 135 'X-RAY DIFFRACTION' ? 5 5 B 148 B 156 ALL B 136 B 144 'X-RAY DIFFRACTION' ? 6 6 B 157 B 230 ALL B 145 B 218 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 MOLREP phasing . ? 3 REFMAC refinement 5.2.0005 ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 8 ? ? -147.92 41.96 2 1 GLU A 27 ? ? 38.95 46.03 3 1 ASN A 141 ? ? 26.04 62.00 4 1 ALA B 8 ? ? -143.55 37.36 5 1 PHE B 107 ? ? -101.11 63.76 6 1 SER B 133 ? ? -145.29 22.43 7 1 ASN B 141 ? ? 53.77 73.78 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 HIS _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 -1 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 HIS _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 0 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -143.44 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 11 ? CE ? A LYS 23 CE 2 1 Y 1 A LYS 11 ? NZ ? A LYS 23 NZ 3 1 Y 1 A ARG 29 ? CD ? A ARG 41 CD 4 1 Y 1 A ARG 29 ? NE ? A ARG 41 NE 5 1 Y 1 A ARG 29 ? CZ ? A ARG 41 CZ 6 1 Y 1 A ARG 29 ? NH1 ? A ARG 41 NH1 7 1 Y 1 A ARG 29 ? NH2 ? A ARG 41 NH2 8 1 Y 1 A ARG 54 ? NE ? A ARG 66 NE 9 1 Y 1 A ARG 54 ? CZ ? A ARG 66 CZ 10 1 Y 1 A ARG 54 ? NH1 ? A ARG 66 NH1 11 1 Y 1 A ARG 54 ? NH2 ? A ARG 66 NH2 12 1 Y 1 A LYS 62 ? CD ? A LYS 74 CD 13 1 Y 1 A LYS 62 ? CE ? A LYS 74 CE 14 1 Y 1 A LYS 62 ? NZ ? A LYS 74 NZ 15 1 Y 1 A GLU 88 ? CD ? A GLU 100 CD 16 1 Y 1 A GLU 88 ? OE1 ? A GLU 100 OE1 17 1 Y 1 A GLU 88 ? OE2 ? A GLU 100 OE2 18 1 Y 1 A GLU 140 ? CG ? A GLU 152 CG 19 1 Y 1 A GLU 140 ? CD ? A GLU 152 CD 20 1 Y 1 A GLU 140 ? OE1 ? A GLU 152 OE1 21 1 Y 1 A GLU 140 ? OE2 ? A GLU 152 OE2 22 1 Y 1 A ASN 141 ? CG ? A ASN 153 CG 23 1 Y 1 A ASN 141 ? OD1 ? A ASN 153 OD1 24 1 Y 1 A ASN 141 ? ND2 ? A ASN 153 ND2 25 1 Y 1 A ASP 142 ? CG ? A ASP 154 CG 26 1 Y 1 A ASP 142 ? OD1 ? A ASP 154 OD1 27 1 Y 1 A ASP 142 ? OD2 ? A ASP 154 OD2 28 1 Y 1 A ARG 143 ? CD ? A ARG 155 CD 29 1 Y 1 A ARG 143 ? NE ? A ARG 155 NE 30 1 Y 1 A ARG 143 ? CZ ? A ARG 155 CZ 31 1 Y 1 A ARG 143 ? NH1 ? A ARG 155 NH1 32 1 Y 1 A ARG 143 ? NH2 ? A ARG 155 NH2 33 1 Y 1 A ILE 144 ? CD1 ? A ILE 156 CD1 34 1 Y 1 A GLU 145 ? CD ? A GLU 157 CD 35 1 Y 1 A GLU 145 ? OE1 ? A GLU 157 OE1 36 1 Y 1 A GLU 145 ? OE2 ? A GLU 157 OE2 37 1 Y 1 A LYS 168 ? CD ? A LYS 180 CD 38 1 Y 1 A LYS 168 ? CE ? A LYS 180 CE 39 1 Y 1 A LYS 168 ? NZ ? A LYS 180 NZ 40 1 Y 1 A LYS 189 ? CD ? A LYS 201 CD 41 1 Y 1 A LYS 189 ? CE ? A LYS 201 CE 42 1 Y 1 A LYS 189 ? NZ ? A LYS 201 NZ 43 1 Y 1 A GLU 194 ? CG ? A GLU 206 CG 44 1 Y 1 A GLU 194 ? CD ? A GLU 206 CD 45 1 Y 1 A GLU 194 ? OE1 ? A GLU 206 OE1 46 1 Y 1 A GLU 194 ? OE2 ? A GLU 206 OE2 47 1 Y 1 B LYS 11 ? CE ? B LYS 23 CE 48 1 Y 1 B LYS 11 ? NZ ? B LYS 23 NZ 49 1 Y 1 B GLU 25 ? CD ? B GLU 37 CD 50 1 Y 1 B GLU 25 ? OE1 ? B GLU 37 OE1 51 1 Y 1 B GLU 25 ? OE2 ? B GLU 37 OE2 52 1 Y 1 B ARG 29 ? NE ? B ARG 41 NE 53 1 Y 1 B ARG 29 ? CZ ? B ARG 41 CZ 54 1 Y 1 B ARG 29 ? NH1 ? B ARG 41 NH1 55 1 Y 1 B ARG 29 ? NH2 ? B ARG 41 NH2 56 1 Y 1 B GLU 43 ? CG ? B GLU 55 CG 57 1 Y 1 B GLU 43 ? CD ? B GLU 55 CD 58 1 Y 1 B GLU 43 ? OE1 ? B GLU 55 OE1 59 1 Y 1 B GLU 43 ? OE2 ? B GLU 55 OE2 60 1 Y 1 B LYS 62 ? NZ ? B LYS 74 NZ 61 1 Y 1 B GLU 88 ? OE1 ? B GLU 100 OE1 62 1 Y 1 B GLU 88 ? OE2 ? B GLU 100 OE2 63 1 Y 1 B ARG 109 ? CZ ? B ARG 121 CZ 64 1 Y 1 B ARG 109 ? NH1 ? B ARG 121 NH1 65 1 Y 1 B ARG 109 ? NH2 ? B ARG 121 NH2 66 1 Y 1 B LYS 111 ? CG ? B LYS 123 CG 67 1 Y 1 B LYS 111 ? CD ? B LYS 123 CD 68 1 Y 1 B LYS 111 ? CE ? B LYS 123 CE 69 1 Y 1 B LYS 111 ? NZ ? B LYS 123 NZ 70 1 Y 1 B GLU 115 ? CG ? B GLU 127 CG 71 1 Y 1 B GLU 115 ? CD ? B GLU 127 CD 72 1 Y 1 B GLU 115 ? OE1 ? B GLU 127 OE1 73 1 Y 1 B GLU 115 ? OE2 ? B GLU 127 OE2 74 1 Y 1 B ARG 118 ? CG ? B ARG 130 CG 75 1 Y 1 B ARG 118 ? CD ? B ARG 130 CD 76 1 Y 1 B ARG 118 ? NE ? B ARG 130 NE 77 1 Y 1 B ARG 118 ? CZ ? B ARG 130 CZ 78 1 Y 1 B ARG 118 ? NH1 ? B ARG 130 NH1 79 1 Y 1 B ARG 118 ? NH2 ? B ARG 130 NH2 80 1 Y 1 B ARG 121 ? CG ? B ARG 133 CG 81 1 Y 1 B ARG 121 ? CD ? B ARG 133 CD 82 1 Y 1 B ARG 121 ? NE ? B ARG 133 NE 83 1 Y 1 B ARG 121 ? CZ ? B ARG 133 CZ 84 1 Y 1 B ARG 121 ? NH1 ? B ARG 133 NH1 85 1 Y 1 B ARG 121 ? NH2 ? B ARG 133 NH2 86 1 Y 1 B GLU 122 ? CG ? B GLU 134 CG 87 1 Y 1 B GLU 122 ? CD ? B GLU 134 CD 88 1 Y 1 B GLU 122 ? OE1 ? B GLU 134 OE1 89 1 Y 1 B GLU 122 ? OE2 ? B GLU 134 OE2 90 1 Y 1 B GLU 140 ? CG ? B GLU 152 CG 91 1 Y 1 B GLU 140 ? CD ? B GLU 152 CD 92 1 Y 1 B GLU 140 ? OE1 ? B GLU 152 OE1 93 1 Y 1 B GLU 140 ? OE2 ? B GLU 152 OE2 94 1 Y 1 B ASN 141 ? CG ? B ASN 153 CG 95 1 Y 1 B ASN 141 ? OD1 ? B ASN 153 OD1 96 1 Y 1 B ASN 141 ? ND2 ? B ASN 153 ND2 97 1 Y 1 B ASP 142 ? CG ? B ASP 154 CG 98 1 Y 1 B ASP 142 ? OD1 ? B ASP 154 OD1 99 1 Y 1 B ASP 142 ? OD2 ? B ASP 154 OD2 100 1 Y 1 B ARG 143 ? CG ? B ARG 155 CG 101 1 Y 1 B ARG 143 ? CD ? B ARG 155 CD 102 1 Y 1 B ARG 143 ? NE ? B ARG 155 NE 103 1 Y 1 B ARG 143 ? CZ ? B ARG 155 CZ 104 1 Y 1 B ARG 143 ? NH1 ? B ARG 155 NH1 105 1 Y 1 B ARG 143 ? NH2 ? B ARG 155 NH2 106 1 Y 1 B GLU 164 ? CG ? B GLU 176 CG 107 1 Y 1 B GLU 164 ? CD ? B GLU 176 CD 108 1 Y 1 B GLU 164 ? OE1 ? B GLU 176 OE1 109 1 Y 1 B GLU 164 ? OE2 ? B GLU 176 OE2 110 1 Y 1 B LYS 167 ? CE ? B LYS 179 CE 111 1 Y 1 B LYS 167 ? NZ ? B LYS 179 NZ 112 1 Y 1 B LYS 168 ? CG ? B LYS 180 CG 113 1 Y 1 B LYS 168 ? CD ? B LYS 180 CD 114 1 Y 1 B LYS 168 ? CE ? B LYS 180 CE 115 1 Y 1 B LYS 168 ? NZ ? B LYS 180 NZ 116 1 Y 1 B LYS 185 ? CE ? B LYS 197 CE 117 1 Y 1 B LYS 185 ? NZ ? B LYS 197 NZ 118 1 Y 1 B LYS 189 ? CG ? B LYS 201 CG 119 1 Y 1 B LYS 189 ? CD ? B LYS 201 CD 120 1 Y 1 B LYS 189 ? CE ? B LYS 201 CE 121 1 Y 1 B LYS 189 ? NZ ? B LYS 201 NZ 122 1 Y 1 B LYS 205 ? CE ? B LYS 217 CE 123 1 Y 1 B LYS 205 ? NZ ? B LYS 217 NZ 124 1 Y 1 B GLU 206 ? OE1 ? B GLU 218 OE1 125 1 Y 1 B GLU 206 ? OE2 ? B GLU 218 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -11 ? A MET 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A HIS -3 ? A HIS 9 10 1 Y 1 A HIS -2 ? A HIS 10 11 1 Y 1 A ARG 220 ? A ARG 232 12 1 Y 1 A ILE 221 ? A ILE 233 13 1 Y 1 A PRO 222 ? A PRO 234 14 1 Y 1 B MET -11 ? B MET 1 15 1 Y 1 B GLY -10 ? B GLY 2 16 1 Y 1 B SER -9 ? B SER 3 17 1 Y 1 B ASP -8 ? B ASP 4 18 1 Y 1 B LYS -7 ? B LYS 5 19 1 Y 1 B ILE -6 ? B ILE 6 20 1 Y 1 B HIS -5 ? B HIS 7 21 1 Y 1 B HIS -4 ? B HIS 8 22 1 Y 1 B HIS -3 ? B HIS 9 23 1 Y 1 B HIS -2 ? B HIS 10 24 1 Y 1 B GLU 219 ? B GLU 231 25 1 Y 1 B ARG 220 ? B ARG 232 26 1 Y 1 B ILE 221 ? B ILE 233 27 1 Y 1 B PRO 222 ? B PRO 234 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "CYTIDINE-5'-TRIPHOSPHATE" CTP 4 'ACETIC ACID' ACY 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 600 600 MG MG A . D 3 CTP 1 500 500 CTP CTP A . E 4 ACY 1 700 700 ACY ACY A . F 2 MG 1 600 600 MG MG B . G 3 CTP 1 500 500 CTP CTP B . H 4 ACY 1 700 700 ACY ACY B . I 5 HOH 1 701 1 HOH HOH A . I 5 HOH 2 702 2 HOH HOH A . I 5 HOH 3 703 5 HOH HOH A . I 5 HOH 4 704 6 HOH HOH A . I 5 HOH 5 705 7 HOH HOH A . I 5 HOH 6 706 15 HOH HOH A . I 5 HOH 7 707 17 HOH HOH A . I 5 HOH 8 708 18 HOH HOH A . I 5 HOH 9 709 19 HOH HOH A . I 5 HOH 10 710 21 HOH HOH A . I 5 HOH 11 711 22 HOH HOH A . I 5 HOH 12 712 23 HOH HOH A . I 5 HOH 13 713 24 HOH HOH A . I 5 HOH 14 714 25 HOH HOH A . I 5 HOH 15 715 26 HOH HOH A . I 5 HOH 16 716 27 HOH HOH A . I 5 HOH 17 717 28 HOH HOH A . I 5 HOH 18 718 30 HOH HOH A . I 5 HOH 19 719 31 HOH HOH A . I 5 HOH 20 720 32 HOH HOH A . I 5 HOH 21 721 33 HOH HOH A . I 5 HOH 22 722 37 HOH HOH A . I 5 HOH 23 723 39 HOH HOH A . I 5 HOH 24 724 40 HOH HOH A . I 5 HOH 25 725 41 HOH HOH A . I 5 HOH 26 726 42 HOH HOH A . I 5 HOH 27 727 43 HOH HOH A . I 5 HOH 28 728 47 HOH HOH A . I 5 HOH 29 729 49 HOH HOH A . I 5 HOH 30 730 51 HOH HOH A . I 5 HOH 31 731 54 HOH HOH A . I 5 HOH 32 732 55 HOH HOH A . I 5 HOH 33 733 56 HOH HOH A . I 5 HOH 34 734 57 HOH HOH A . I 5 HOH 35 735 58 HOH HOH A . I 5 HOH 36 736 61 HOH HOH A . I 5 HOH 37 737 63 HOH HOH A . I 5 HOH 38 738 64 HOH HOH A . I 5 HOH 39 739 67 HOH HOH A . I 5 HOH 40 740 68 HOH HOH A . I 5 HOH 41 741 71 HOH HOH A . I 5 HOH 42 742 72 HOH HOH A . I 5 HOH 43 743 74 HOH HOH A . I 5 HOH 44 744 76 HOH HOH A . I 5 HOH 45 745 78 HOH HOH A . I 5 HOH 46 746 79 HOH HOH A . I 5 HOH 47 747 81 HOH HOH A . I 5 HOH 48 748 82 HOH HOH A . I 5 HOH 49 749 83 HOH HOH A . I 5 HOH 50 750 86 HOH HOH A . I 5 HOH 51 751 87 HOH HOH A . I 5 HOH 52 752 88 HOH HOH A . I 5 HOH 53 753 90 HOH HOH A . I 5 HOH 54 754 93 HOH HOH A . I 5 HOH 55 755 94 HOH HOH A . I 5 HOH 56 756 95 HOH HOH A . I 5 HOH 57 757 99 HOH HOH A . I 5 HOH 58 758 100 HOH HOH A . I 5 HOH 59 759 101 HOH HOH A . I 5 HOH 60 760 102 HOH HOH A . I 5 HOH 61 761 104 HOH HOH A . I 5 HOH 62 762 106 HOH HOH A . I 5 HOH 63 763 108 HOH HOH A . I 5 HOH 64 764 110 HOH HOH A . I 5 HOH 65 765 111 HOH HOH A . I 5 HOH 66 766 112 HOH HOH A . I 5 HOH 67 767 113 HOH HOH A . I 5 HOH 68 768 114 HOH HOH A . I 5 HOH 69 769 115 HOH HOH A . I 5 HOH 70 770 116 HOH HOH A . J 5 HOH 1 701 3 HOH HOH B . J 5 HOH 2 702 4 HOH HOH B . J 5 HOH 3 703 8 HOH HOH B . J 5 HOH 4 704 9 HOH HOH B . J 5 HOH 5 705 10 HOH HOH B . J 5 HOH 6 706 11 HOH HOH B . J 5 HOH 7 707 12 HOH HOH B . J 5 HOH 8 708 13 HOH HOH B . J 5 HOH 9 709 14 HOH HOH B . J 5 HOH 10 710 16 HOH HOH B . J 5 HOH 11 711 20 HOH HOH B . J 5 HOH 12 712 29 HOH HOH B . J 5 HOH 13 713 34 HOH HOH B . J 5 HOH 14 714 35 HOH HOH B . J 5 HOH 15 715 36 HOH HOH B . J 5 HOH 16 716 38 HOH HOH B . J 5 HOH 17 717 44 HOH HOH B . J 5 HOH 18 718 45 HOH HOH B . J 5 HOH 19 719 46 HOH HOH B . J 5 HOH 20 720 48 HOH HOH B . J 5 HOH 21 721 50 HOH HOH B . J 5 HOH 22 722 52 HOH HOH B . J 5 HOH 23 723 53 HOH HOH B . J 5 HOH 24 724 59 HOH HOH B . J 5 HOH 25 725 60 HOH HOH B . J 5 HOH 26 726 62 HOH HOH B . J 5 HOH 27 727 65 HOH HOH B . J 5 HOH 28 728 66 HOH HOH B . J 5 HOH 29 729 69 HOH HOH B . J 5 HOH 30 730 70 HOH HOH B . J 5 HOH 31 731 73 HOH HOH B . J 5 HOH 32 732 75 HOH HOH B . J 5 HOH 33 733 77 HOH HOH B . J 5 HOH 34 734 80 HOH HOH B . J 5 HOH 35 735 84 HOH HOH B . J 5 HOH 36 736 85 HOH HOH B . J 5 HOH 37 737 89 HOH HOH B . J 5 HOH 38 738 91 HOH HOH B . J 5 HOH 39 739 92 HOH HOH B . J 5 HOH 40 740 96 HOH HOH B . J 5 HOH 41 741 97 HOH HOH B . J 5 HOH 42 742 98 HOH HOH B . J 5 HOH 43 743 103 HOH HOH B . J 5 HOH 44 744 105 HOH HOH B . J 5 HOH 45 745 107 HOH HOH B . J 5 HOH 46 746 109 HOH HOH B . J 5 HOH 47 747 117 HOH HOH B . J 5 HOH 48 748 118 HOH HOH B . J 5 HOH 49 749 119 HOH HOH B . #