HEADER REGULATORY PROTEIN 20-FEB-98 1VPC TITLE C-TERMINAL DOMAIN (52-96) OF THE HIV-1 REGULATORY PROTEIN VPR, NMR, 1 TITLE 2 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VPR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 52-96; COMPND 5 SYNONYM: VPR HIV-1 (LAI); COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676 KEYWDS REGULATORY PROTEIN, HELICAL DOMAIN, LEUCINE-ZIPPER EXPDTA SOLUTION NMR AUTHOR W.SCHUELER,H.DE ROCQUIGNY,Y.BAUDAT,J.SIRE,B.P.ROQUES REVDAT 4 02-MAR-22 1VPC 1 REMARK REVDAT 3 24-FEB-09 1VPC 1 VERSN REVDAT 2 01-APR-03 1VPC 1 JRNL REVDAT 1 23-MAR-99 1VPC 0 JRNL AUTH W.SCHULER,K.WECKER,H.DE ROCQUIGNY,Y.BAUDAT,J.SIRE,B.P.ROQUES JRNL TITL NMR STRUCTURE OF THE (52-96) C-TERMINAL DOMAIN OF THE HIV-1 JRNL TITL 2 REGULATORY PROTEIN VPR: MOLECULAR INSIGHTS INTO ITS JRNL TITL 3 BIOLOGICAL FUNCTIONS. JRNL REF J.MOL.BIOL. V. 285 2105 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 9925788 JRNL DOI 10.1006/JMBI.1998.2381 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER REMARK 3 AUTHORS : BIOSYM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SEVENTY STRUCTURES WERE GENERATED BY REMARK 3 SIMULATED ANNEALING AND FIFTEEN SELECTED STRUCTURES FURTHER REMARK 3 REFINED BY RESTRAINED MOLECULAR DYNAMICS (5PS 1000K, 10PS 600K, REMARK 3 55PS 300K) FOLLOWED BY ENERGY MINIMIZATION. THE BEST STRUCTURE REMARK 3 SELECTED WITH RESPECT TO RESTRAINT VIOLATIONS AND TOTAL ENERGY REMARK 3 IS PRESENTED IN THIS ENTRY. REMARK 4 REMARK 4 1VPC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177085. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 3.4 REMARK 210 IONIC STRENGTH : LOW SALT CONDITIONS REMARK 210 PRESSURE : 1 ATMOSPHERE REMARK 210 SAMPLE CONTENTS : 70% H2O 30% TFE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; E.COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : BRUKER UXNMR UXNMR, BIOSYM/MSI REMARK 210 FELIX FELIX REMARK 210 METHOD USED : DYNAMICAL SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS, ENERGY REMARK 210 MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 15 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATIONS, REMARK 210 LOWEST TOTAL ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING 1H-NMR SPECTROSCOPY ON REMARK 210 THE C-TERMINAL DOMAIN (52-96)VPR. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 78 CG HIS A 78 CD2 0.061 REMARK 500 SER A 96 C SER A 96 OXT 0.151 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 77 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 88 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 78 -72.40 -110.49 REMARK 500 ARG A 80 64.49 76.62 REMARK 500 ILE A 81 -74.04 -95.69 REMARK 500 ILE A 83 71.87 63.36 REMARK 500 GLN A 85 -59.24 -155.53 REMARK 500 ARG A 88 -72.82 -102.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 1VPC A 52 96 UNP Q73369 Q73369_9HIV1 52 96 SEQRES 1 A 45 ASP THR TRP THR GLY VAL GLU ALA LEU ILE ARG ILE LEU SEQRES 2 A 45 GLN GLN LEU LEU PHE ILE HIS PHE ARG ILE GLY CYS ARG SEQRES 3 A 45 HIS SER ARG ILE GLY ILE ILE GLN GLN ARG ARG THR ARG SEQRES 4 A 45 ASN GLY ALA SER LYS SER HELIX 1 1 TRP A 54 CYS A 76 1 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000