HEADER LYASE 04-NOV-04 1VPJ OBSLTE 28-NOV-06 1VPJ 2ISB TITLE CRYSTAL STRUCTURE OF FUMARASE (FUM-1) (NP_069927.1) FROM TITLE 2 ARCHAEOGLOBUS FULGIDUS AT 1.69 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUMARASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FUM-1; COMPND 5 EC: 4.2.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS DSM 4304; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 GENE: FUM-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS NP_069927.1, FUMARASE (FUM-1), STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 2 28-NOV-06 1VPJ 1 OBSLTE REVDAT 1 16-NOV-04 1VPJ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF FUMARASE (FUM-1) JRNL TITL 2 (NP_069927.1) FROM ARCHAEOGLOBUS FULGIDUS AT 1.69 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.00 REMARK 3 NUMBER OF REFLECTIONS : 43128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 2261 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH : 1.690 REMARK 3 BIN RESOLUTION RANGE LOW : 1.734 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2684 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.238 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.294 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 2915 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60 REMARK 3 B22 (A**2) : 0.60 REMARK 3 B33 (A**2) : -1.20 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.822 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2712 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2599 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3682 ; 1.636 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5973 ; 0.870 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 354 ; 6.636 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;37.879 ;22.706 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 443 ;12.129 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.139 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 429 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2988 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 548 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 453 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2482 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1329 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1600 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 190 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.090 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 20 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1873 ; 2.678 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 736 ; 0.552 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2839 ; 2.906 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1065 ; 5.748 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 843 ; 7.660 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 0 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0650 15.9670 127.9300 REMARK 3 T TENSOR REMARK 3 T11: -0.1249 T22: -0.0741 REMARK 3 T33: -0.1037 T12: -0.0156 REMARK 3 T13: 0.0010 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.9162 L22: 1.1587 REMARK 3 L33: 1.7131 L12: -0.0277 REMARK 3 L13: 0.2382 L23: 0.4571 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: -0.0915 S13: 0.0337 REMARK 3 S21: 0.0425 S22: 0.0275 S23: -0.0908 REMARK 3 S31: -0.0562 S32: 0.1867 S33: -0.0241 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 179 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8830 2.7310 100.5240 REMARK 3 T TENSOR REMARK 3 T11: -0.0748 T22: -0.1238 REMARK 3 T33: -0.1027 T12: -0.0155 REMARK 3 T13: -0.0096 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.0708 L22: 1.0323 REMARK 3 L33: 1.8624 L12: -0.0032 REMARK 3 L13: 0.5083 L23: 0.2177 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: 0.0380 S13: -0.0885 REMARK 3 S21: -0.0941 S22: -0.0006 S23: 0.0309 REMARK 3 S31: 0.1782 S32: -0.0489 S33: -0.0221 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. WEAK DENSITY NEAR A/B69-73. ALTHOUGH THERE REMARK 3 IS CONTINUOUS DENSITY FOR RESIDUES A/B180, THEY HAVE NOT BEEN REMARK 3 MODELED BECAUSE THE DENSITY DOES NOT MATCH THE SIDECHAIN REMARK 3 INDICATED BY THE SEQUENCE (ARG), AND THERE IS INSUFFICIENT REMARK 3 EVIDENCE TO DETERMINE IF THIS IS A SEQUENCE ERROR. REMARK 4 REMARK 4 1VPJ COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-NOV-2004. REMARK 100 THE RCSB ID CODE IS RCSB002038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-2004 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS REMARK 200 BEAMLINE : 8.2.1; 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000; 0.97950,1.00000, REMARK 200 0.97966 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA(CCP4 4.2) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45288 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 21.16 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.4 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.079 REMARK 200 FOR THE DATA SET : 11.4 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.3 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.617 REMARK 200 FOR SHELL : 2.0 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LIACETATE, 20.0% PEG-3350, NO REMARK 280 BUFFER PH 7.8, VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,1/2+Z REMARK 290 3555 -Y,X,3/4+Z REMARK 290 4555 Y,-X,1/4+Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.90100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 118.35150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.45050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ARG A 180 REMARK 465 MSE B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 180 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 8 CD NE CZ NH1 NH2 REMARK 470 ASP A 14 CG OD1 OD2 REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 LYS A 20 CE NZ REMARK 470 GLU A 30 CD OE1 OE2 REMARK 470 GLU A 47 CD OE1 OE2 REMARK 470 GLU A 51 CD OE1 OE2 REMARK 470 LYS A 58 CE NZ REMARK 470 LYS A 70 CE NZ REMARK 470 ASP A 72 CG OD1 OD2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 ARG A 75 CD NE CZ NH1 NH2 REMARK 470 LYS A 93 CE NZ REMARK 470 GLU A 96 CD OE1 OE2 REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 GLU A 99 CD OE1 OE2 REMARK 470 GLU A 112 CD OE1 OE2 REMARK 470 LYS A 142 CD CE NZ REMARK 470 GLU A 159 CD OE1 OE2 REMARK 470 GLU A 161 CD OE1 OE2 REMARK 470 ARG B 8 CD NE CZ NH1 NH2 REMARK 470 ASP B 14 CG OD1 OD2 REMARK 470 LYS B 18 CD CE NZ REMARK 470 LYS B 20 CE NZ REMARK 470 GLU B 30 CD OE1 OE2 REMARK 470 GLU B 47 CD OE1 OE2 REMARK 470 GLU B 51 CD OE1 OE2 REMARK 470 LYS B 70 CE NZ REMARK 470 ASN B 71 CG OD1 ND2 REMARK 470 ASP B 72 CG OD1 OD2 REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 ARG B 75 CD NE CZ NH1 NH2 REMARK 470 LYS B 93 CD CE NZ REMARK 470 GLU B 96 CD OE1 OE2 REMARK 470 LYS B 97 CG CD CE NZ REMARK 470 GLU B 99 CD OE1 OE2 REMARK 470 GLU B 112 CD OE1 OE2 REMARK 470 LYS B 142 CE NZ REMARK 470 GLU B 159 CD OE1 OE2 REMARK 470 GLU B 161 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 145 CB VAL A 145 CG2 -0.117 REMARK 500 LYS B 120 CB LYS B 120 CG -0.180 REMARK 500 VAL B 145 CB VAL B 145 CG2 -0.119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 120 CB - CA - C ANGL. DEV. =-11.2 DEGREES REMARK 525 REMARK 525 SOLVENT REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND MAY BE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH 220 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH 242 DISTANCE = 6.48 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 356698 RELATED DB: TARGETDB DBREF 1VPJ A 1 180 UNP O29167 O29167_ARCFU 1 180 DBREF 1VPJ B 1 180 UNP O29167 O29167_ARCFU 1 180 SEQADV 1VPJ MSE A -11 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ GLY A -10 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ SER A -9 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ ASP A -8 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ LYS A -7 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ ILE A -6 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ HIS A -5 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ HIS A -4 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ HIS A -3 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ HIS A -2 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ HIS A -1 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ HIS A 0 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ MSE A 1 UNP O29167 MET 1 MODIFIED RESIDUE SEQADV 1VPJ MSE A 3 UNP O29167 MET 3 MODIFIED RESIDUE SEQADV 1VPJ MSE A 46 UNP O29167 MET 46 MODIFIED RESIDUE SEQADV 1VPJ MSE A 87 UNP O29167 MET 87 MODIFIED RESIDUE SEQADV 1VPJ MSE A 101 UNP O29167 MET 101 MODIFIED RESIDUE SEQADV 1VPJ MSE A 109 UNP O29167 MET 109 MODIFIED RESIDUE SEQADV 1VPJ MSE A 117 UNP O29167 MET 117 MODIFIED RESIDUE SEQADV 1VPJ MSE A 136 UNP O29167 MET 136 MODIFIED RESIDUE SEQADV 1VPJ MSE A 151 UNP O29167 MET 151 MODIFIED RESIDUE SEQADV 1VPJ MSE B -11 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ GLY B -10 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ SER B -9 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ ASP B -8 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ LYS B -7 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ ILE B -6 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ HIS B -5 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ HIS B -4 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ HIS B -3 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ HIS B -2 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ HIS B -1 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ HIS B 0 UNP O29167 LEADER SEQUENCE SEQADV 1VPJ MSE B 1 UNP O29167 MET 1 MODIFIED RESIDUE SEQADV 1VPJ MSE B 3 UNP O29167 MET 3 MODIFIED RESIDUE SEQADV 1VPJ MSE B 46 UNP O29167 MET 46 MODIFIED RESIDUE SEQADV 1VPJ MSE B 87 UNP O29167 MET 87 MODIFIED RESIDUE SEQADV 1VPJ MSE B 101 UNP O29167 MET 101 MODIFIED RESIDUE SEQADV 1VPJ MSE B 109 UNP O29167 MET 109 MODIFIED RESIDUE SEQADV 1VPJ MSE B 117 UNP O29167 MET 117 MODIFIED RESIDUE SEQADV 1VPJ MSE B 136 UNP O29167 MET 136 MODIFIED RESIDUE SEQADV 1VPJ MSE B 151 UNP O29167 MET 151 MODIFIED RESIDUE SEQRES 1 A 192 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 192 VAL MSE GLU TYR GLU LEU ARG THR PRO LEU VAL LYS ASP SEQRES 3 A 192 GLN ILE LEU LYS LEU LYS VAL GLY ASP VAL VAL TYR ILE SEQRES 4 A 192 THR GLY GLU ILE PHE THR ALA ARG ASP GLU ALA HIS ALA SEQRES 5 A 192 ARG ALA LEU GLU TRP MSE GLU GLU GLY LYS GLU LEU PRO SEQRES 6 A 192 PHE SER PHE ASP LYS GLY VAL VAL TYR HIS CYS GLY PRO SEQRES 7 A 192 LEU VAL LYS LYS ASN ASP GLU TRP ARG VAL VAL SER ALA SEQRES 8 A 192 GLY PRO THR THR SER ALA ARG MSE ASN PRO PHE THR PRO SEQRES 9 A 192 LYS ILE LEU GLU LYS VAL GLU CYS MSE GLY ILE ILE GLY SEQRES 10 A 192 LYS GLY GLY MSE SER GLU GLU VAL VAL GLU ALA MSE ARG SEQRES 11 A 192 GLY LYS ALA ALA TYR PHE ALA PHE THR GLY GLY ALA GLY SEQRES 12 A 192 ALA LEU ALA ALA MSE SER ILE LYS LYS VAL LYS GLY VAL SEQRES 13 A 192 VAL TRP GLU ASP LEU GLY MSE PRO GLU ALA VAL TRP LEU SEQRES 14 A 192 LEU GLU VAL GLU ARG PHE GLY PRO CYS ILE VAL ALA ILE SEQRES 15 A 192 ASP ALA HIS GLY ASN SER LEU TYR ARG ARG SEQRES 1 B 192 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 B 192 VAL MSE GLU TYR GLU LEU ARG THR PRO LEU VAL LYS ASP SEQRES 3 B 192 GLN ILE LEU LYS LEU LYS VAL GLY ASP VAL VAL TYR ILE SEQRES 4 B 192 THR GLY GLU ILE PHE THR ALA ARG ASP GLU ALA HIS ALA SEQRES 5 B 192 ARG ALA LEU GLU TRP MSE GLU GLU GLY LYS GLU LEU PRO SEQRES 6 B 192 PHE SER PHE ASP LYS GLY VAL VAL TYR HIS CYS GLY PRO SEQRES 7 B 192 LEU VAL LYS LYS ASN ASP GLU TRP ARG VAL VAL SER ALA SEQRES 8 B 192 GLY PRO THR THR SER ALA ARG MSE ASN PRO PHE THR PRO SEQRES 9 B 192 LYS ILE LEU GLU LYS VAL GLU CYS MSE GLY ILE ILE GLY SEQRES 10 B 192 LYS GLY GLY MSE SER GLU GLU VAL VAL GLU ALA MSE ARG SEQRES 11 B 192 GLY LYS ALA ALA TYR PHE ALA PHE THR GLY GLY ALA GLY SEQRES 12 B 192 ALA LEU ALA ALA MSE SER ILE LYS LYS VAL LYS GLY VAL SEQRES 13 B 192 VAL TRP GLU ASP LEU GLY MSE PRO GLU ALA VAL TRP LEU SEQRES 14 B 192 LEU GLU VAL GLU ARG PHE GLY PRO CYS ILE VAL ALA ILE SEQRES 15 B 192 ASP ALA HIS GLY ASN SER LEU TYR ARG ARG MODRES 1VPJ MSE A 3 MET SELENOMETHIONINE MODRES 1VPJ MSE A 46 MET SELENOMETHIONINE MODRES 1VPJ MSE A 87 MET SELENOMETHIONINE MODRES 1VPJ MSE A 101 MET SELENOMETHIONINE MODRES 1VPJ MSE A 109 MET SELENOMETHIONINE MODRES 1VPJ MSE A 117 MET SELENOMETHIONINE MODRES 1VPJ MSE A 136 MET SELENOMETHIONINE MODRES 1VPJ MSE A 151 MET SELENOMETHIONINE MODRES 1VPJ MSE B 3 MET SELENOMETHIONINE MODRES 1VPJ MSE B 46 MET SELENOMETHIONINE MODRES 1VPJ MSE B 87 MET SELENOMETHIONINE MODRES 1VPJ MSE B 101 MET SELENOMETHIONINE MODRES 1VPJ MSE B 109 MET SELENOMETHIONINE MODRES 1VPJ MSE B 117 MET SELENOMETHIONINE MODRES 1VPJ MSE B 136 MET SELENOMETHIONINE MODRES 1VPJ MSE B 151 MET SELENOMETHIONINE HET MSE A 3 8 HET MSE A 46 8 HET MSE A 87 8 HET MSE A 101 8 HET MSE A 109 8 HET MSE A 117 8 HET MSE A 136 12 HET MSE A 151 8 HET MSE B 3 8 HET MSE B 46 8 HET MSE B 87 8 HET MSE B 101 8 HET MSE B 109 8 HET MSE B 117 8 HET MSE B 136 8 HET MSE B 151 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 HOH *263(H2 O) HELIX 1 1 VAL A 12 LEU A 19 1 8 HELIX 2 2 ARG A 35 GLY A 49 1 15 HELIX 3 3 THR A 83 ASN A 88 5 6 HELIX 4 4 PHE A 90 VAL A 98 1 9 HELIX 5 5 SER A 110 ARG A 118 1 9 HELIX 6 6 LEU A 133 MSE A 136 5 4 HELIX 7 7 TRP A 146 GLY A 150 5 5 HELIX 8 8 VAL B 12 LEU B 19 1 8 HELIX 9 9 ARG B 35 GLY B 49 1 15 HELIX 10 10 THR B 83 ASN B 88 5 6 HELIX 11 11 PHE B 90 VAL B 98 1 9 HELIX 12 12 SER B 110 ARG B 118 1 9 HELIX 13 13 LEU B 133 MSE B 136 5 4 HELIX 14 14 TRP B 146 GLY B 150 5 5 SHEET 1 A 7 GLU A 4 ARG A 8 0 SHEET 2 A 7 VAL A 24 THR A 33 1 O THR A 28 N LEU A 7 SHEET 3 A 7 VAL A 60 TYR A 62 1 O TYR A 62 N PHE A 32 SHEET 4 A 7 MSE A 101 GLY A 105 1 O ILE A 104 N VAL A 61 SHEET 5 A 7 ALA A 121 PHE A 126 1 O PHE A 124 N ILE A 103 SHEET 6 A 7 VAL A 155 ILE A 170 -1 O ILE A 167 N ALA A 125 SHEET 7 A 7 ILE A 138 VAL A 145 -1 N LYS A 140 O GLU A 159 SHEET 1 B 4 GLU A 4 ARG A 8 0 SHEET 2 B 4 VAL A 24 THR A 33 1 O THR A 28 N LEU A 7 SHEET 3 B 4 VAL A 155 ILE A 170 -1 O VAL A 160 N GLY A 29 SHEET 4 B 4 ILE A 138 VAL A 145 -1 N LYS A 140 O GLU A 159 SHEET 1 C 2 LEU A 67 LYS A 70 0 SHEET 2 C 2 TRP A 74 SER A 78 -1 O ARG A 75 N LYS A 69 SHEET 1 D 7 GLU B 4 ARG B 8 0 SHEET 2 D 7 VAL B 24 THR B 33 1 O VAL B 24 N TYR B 5 SHEET 3 D 7 VAL B 60 TYR B 62 1 O TYR B 62 N PHE B 32 SHEET 4 D 7 MSE B 101 GLY B 105 1 O ILE B 104 N VAL B 61 SHEET 5 D 7 ALA B 121 PHE B 126 1 O PHE B 124 N ILE B 103 SHEET 6 D 7 VAL B 155 ILE B 170 -1 O ILE B 167 N ALA B 125 SHEET 7 D 7 ILE B 138 VAL B 145 -1 N LYS B 140 O GLU B 159 SHEET 1 E 4 GLU B 4 ARG B 8 0 SHEET 2 E 4 VAL B 24 THR B 33 1 O VAL B 24 N TYR B 5 SHEET 3 E 4 VAL B 155 ILE B 170 -1 O VAL B 160 N GLY B 29 SHEET 4 E 4 ILE B 138 VAL B 145 -1 N LYS B 140 O GLU B 159 SHEET 1 F 2 LEU B 67 LYS B 70 0 SHEET 2 F 2 TRP B 74 SER B 78 -1 O ARG B 75 N LYS B 69 CISPEP 1 THR A 9 PRO A 10 0 -8.19 CISPEP 2 GLY A 164 PRO A 165 0 5.04 CISPEP 3 THR B 9 PRO B 10 0 -5.46 CISPEP 4 GLY B 164 PRO B 165 0 4.12 CRYST1 51.692 51.692 157.802 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019345 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006337 0.00000