HEADER LYASE 10-NOV-04 1VPL TITLE CRYSTAL STRUCTURE OF ABC TRANSPORTER ATP-BINDING PROTEIN (TM0544) FROM TITLE 2 THERMOTOGA MARITIMA AT 2.10 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER, ATP-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM0544; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM0544, ABC TRANSPORTER ATP-BINDING PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 23-AUG-23 1VPL 1 REMARK SEQADV REVDAT 3 13-JUL-11 1VPL 1 VERSN REVDAT 2 24-FEB-09 1VPL 1 VERSN REVDAT 1 23-NOV-04 1VPL 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF ABC TRANSPORTER ATP-BINDING PROTEIN JRNL TITL 2 (TM0544) FROM THERMOTOGA MARITIMA AT 2.10 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0001 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 19181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1030 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1297 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1849 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 36.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.79000 REMARK 3 B22 (A**2) : 1.79000 REMARK 3 B33 (A**2) : -2.68000 REMARK 3 B12 (A**2) : 0.89000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.791 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1932 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1875 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2602 ; 1.667 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4356 ; 0.875 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 239 ; 6.360 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;35.338 ;23.765 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 384 ;17.406 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.635 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 306 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2092 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 374 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 385 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1987 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1196 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 84 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.240 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 79 ; 0.305 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.171 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1302 ; 2.698 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 494 ; 0.572 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1933 ; 3.445 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 791 ; 6.963 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 669 ; 9.490 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 239 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0603 34.1259 15.2603 REMARK 3 T TENSOR REMARK 3 T11: -0.2159 T22: -0.0782 REMARK 3 T33: -0.0785 T12: 0.0511 REMARK 3 T13: -0.0093 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.6622 L22: 0.6310 REMARK 3 L33: 4.7684 L12: -0.2421 REMARK 3 L13: -0.6643 L23: 0.1640 REMARK 3 S TENSOR REMARK 3 S11: 0.0373 S12: 0.0372 S13: 0.0381 REMARK 3 S21: -0.0250 S22: 0.0264 S23: 0.0124 REMARK 3 S31: 0.0859 S32: 0.1137 S33: -0.0638 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000002040. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918370 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20216 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 39.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11900 REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.66000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1JI0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M (NH4)2SO4, 0.1M CITRATE PH 4.0, REMARK 280 VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.07933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.15867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.15867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.07933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 72.23800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 CYS A 240 REMARK 465 SER A 241 REMARK 465 GLU A 242 REMARK 465 ASN A 243 REMARK 465 PHE A 244 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CD CE NZ REMARK 470 LYS A 127 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 183 OE2 GLU A 219 3664 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 202 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 224 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 51 -0.87 72.26 REMARK 500 ASN A 90 36.75 -99.37 REMARK 500 LEU A 200 -46.21 -131.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 245 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 246 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282417 RELATED DB: TARGETDB DBREF 1VPL A 1 244 UNP Q9WZ14 Q9WZ14_THEMA 1 244 SEQADV 1VPL MET A -11 UNP Q9WZ14 INSERTION SEQADV 1VPL GLY A -10 UNP Q9WZ14 INSERTION SEQADV 1VPL SER A -9 UNP Q9WZ14 INSERTION SEQADV 1VPL ASP A -8 UNP Q9WZ14 INSERTION SEQADV 1VPL LYS A -7 UNP Q9WZ14 INSERTION SEQADV 1VPL ILE A -6 UNP Q9WZ14 INSERTION SEQADV 1VPL HIS A -5 UNP Q9WZ14 INSERTION SEQADV 1VPL HIS A -4 UNP Q9WZ14 INSERTION SEQADV 1VPL HIS A -3 UNP Q9WZ14 INSERTION SEQADV 1VPL HIS A -2 UNP Q9WZ14 INSERTION SEQADV 1VPL HIS A -1 UNP Q9WZ14 INSERTION SEQADV 1VPL HIS A 0 UNP Q9WZ14 INSERTION SEQRES 1 A 256 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 256 GLY ALA VAL VAL VAL LYS ASP LEU ARG LYS ARG ILE GLY SEQRES 3 A 256 LYS LYS GLU ILE LEU LYS GLY ILE SER PHE GLU ILE GLU SEQRES 4 A 256 GLU GLY GLU ILE PHE GLY LEU ILE GLY PRO ASN GLY ALA SEQRES 5 A 256 GLY LYS THR THR THR LEU ARG ILE ILE SER THR LEU ILE SEQRES 6 A 256 LYS PRO SER SER GLY ILE VAL THR VAL PHE GLY LYS ASN SEQRES 7 A 256 VAL VAL GLU GLU PRO HIS GLU VAL ARG LYS LEU ILE SER SEQRES 8 A 256 TYR LEU PRO GLU GLU ALA GLY ALA TYR ARG ASN MET GLN SEQRES 9 A 256 GLY ILE GLU TYR LEU ARG PHE VAL ALA GLY PHE TYR ALA SEQRES 10 A 256 SER SER SER SER GLU ILE GLU GLU MET VAL GLU ARG ALA SEQRES 11 A 256 THR GLU ILE ALA GLY LEU GLY GLU LYS ILE LYS ASP ARG SEQRES 12 A 256 VAL SER THR TYR SER LYS GLY MET VAL ARG LYS LEU LEU SEQRES 13 A 256 ILE ALA ARG ALA LEU MET VAL ASN PRO ARG LEU ALA ILE SEQRES 14 A 256 LEU ASP GLU PRO THR SER GLY LEU ASP VAL LEU ASN ALA SEQRES 15 A 256 ARG GLU VAL ARG LYS ILE LEU LYS GLN ALA SER GLN GLU SEQRES 16 A 256 GLY LEU THR ILE LEU VAL SER SER HIS ASN MET LEU GLU SEQRES 17 A 256 VAL GLU PHE LEU CYS ASP ARG ILE ALA LEU ILE HIS ASN SEQRES 18 A 256 GLY THR ILE VAL GLU THR GLY THR VAL GLU GLU LEU LYS SEQRES 19 A 256 GLU ARG TYR LYS ALA GLN ASN ILE GLU GLU VAL PHE GLU SEQRES 20 A 256 GLU VAL VAL LYS CYS SER GLU ASN PHE HET SO4 A 245 5 HET SO4 A 246 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *136(H2 O) HELIX 1 1 GLY A 41 SER A 50 1 10 HELIX 2 2 GLU A 70 LYS A 76 1 7 HELIX 3 3 GLN A 92 ALA A 105 1 14 HELIX 4 4 SER A 107 GLY A 123 1 17 HELIX 5 5 LEU A 124 ASP A 130 5 7 HELIX 6 6 ARG A 131 TYR A 135 5 5 HELIX 7 7 SER A 136 MET A 150 1 15 HELIX 8 8 ASP A 166 GLU A 183 1 18 HELIX 9 9 ASN A 193 GLU A 198 1 6 HELIX 10 10 VAL A 218 TYR A 225 1 8 HELIX 11 11 ASN A 229 LYS A 239 1 11 SHEET 1 A 4 LYS A 16 ILE A 26 0 SHEET 2 A 4 VAL A 4 ILE A 13 -1 N LEU A 9 O ILE A 22 SHEET 3 A 4 SER A 57 VAL A 62 -1 O THR A 61 N VAL A 5 SHEET 4 A 4 LYS A 65 ASN A 66 -1 O LYS A 65 N VAL A 62 SHEET 1 B 6 ILE A 78 LEU A 81 0 SHEET 2 B 6 LEU A 155 ASP A 159 1 O ILE A 157 N SER A 79 SHEET 3 B 6 THR A 186 SER A 191 1 O LEU A 188 N ALA A 156 SHEET 4 B 6 ILE A 31 ILE A 35 1 N LEU A 34 O VAL A 189 SHEET 5 B 6 ARG A 203 HIS A 208 1 O ILE A 207 N ILE A 35 SHEET 6 B 6 THR A 211 THR A 217 -1 O GLY A 216 N ILE A 204 SITE 1 AC1 9 PRO A 37 ASN A 38 GLY A 39 ALA A 40 SITE 2 AC1 9 GLY A 41 LYS A 42 THR A 43 HOH A 250 SITE 3 AC1 9 HOH A 361 SITE 1 AC2 4 ARG A 12 SER A 56 HOH A 327 HOH A 379 CRYST1 90.590 90.590 72.238 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011039 0.006373 0.000000 0.00000 SCALE2 0.000000 0.012746 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013843 0.00000 TER 1902 LYS A 239 HETATM 1903 S SO4 A 245 16.839 30.880 20.624 1.00 23.84 S HETATM 1904 O1 SO4 A 245 17.744 30.515 21.768 1.00 22.17 O HETATM 1905 O2 SO4 A 245 17.520 31.685 19.620 1.00 23.79 O HETATM 1906 O3 SO4 A 245 15.780 31.743 21.099 1.00 23.64 O HETATM 1907 O4 SO4 A 245 16.457 29.569 20.229 1.00 22.22 O HETATM 1908 S SO4 A 246 9.083 48.043 23.435 1.00 71.76 S HETATM 1909 O1 SO4 A 246 9.429 47.499 22.127 1.00 77.18 O HETATM 1910 O2 SO4 A 246 9.116 46.989 24.448 1.00 86.87 O HETATM 1911 O3 SO4 A 246 7.706 48.536 23.422 1.00 91.36 O HETATM 1912 O4 SO4 A 246 9.992 49.158 23.745 1.00 78.08 O HETATM 1913 O HOH A 247 30.893 16.960 2.565 1.00 30.96 O HETATM 1914 O HOH A 248 20.300 30.705 18.133 1.00 19.00 O HETATM 1915 O HOH A 249 19.054 33.334 12.704 1.00 23.79 O HETATM 1916 O HOH A 250 15.708 34.127 20.106 1.00 17.49 O HETATM 1917 O HOH A 251 26.586 26.073 16.541 1.00 20.15 O HETATM 1918 O HOH A 252 15.386 28.310 27.570 1.00 21.03 O HETATM 1919 O HOH A 253 22.359 39.088 33.415 1.00 21.24 O HETATM 1920 O HOH A 254 12.786 46.311 16.419 1.00 39.98 O HETATM 1921 O HOH A 255 22.284 50.639 23.432 1.00 26.54 O HETATM 1922 O HOH A 256 27.331 18.307 7.219 1.00 29.00 O HETATM 1923 O HOH A 257 36.717 28.757 38.450 1.00 32.60 O HETATM 1924 O HOH A 258 37.699 21.378 16.806 1.00 32.97 O HETATM 1925 O HOH A 259 25.157 31.186 -16.732 1.00 40.06 O HETATM 1926 O HOH A 260 16.433 47.422 31.105 1.00 25.24 O HETATM 1927 O HOH A 261 20.080 37.655 33.295 1.00 24.18 O HETATM 1928 O HOH A 262 39.574 31.164 8.865 1.00 20.93 O HETATM 1929 O HOH A 263 38.194 42.085 16.499 1.00 27.73 O HETATM 1930 O HOH A 264 25.884 41.950 8.393 1.00 33.48 O HETATM 1931 O HOH A 265 23.656 27.985 10.797 1.00 32.12 O HETATM 1932 O HOH A 266 15.576 26.831 35.940 0.50 32.12 O HETATM 1933 O HOH A 267 33.343 33.919 35.900 1.00 28.50 O HETATM 1934 O HOH A 268 18.893 26.982 19.628 1.00 31.91 O HETATM 1935 O HOH A 269 31.824 48.088 23.668 1.00 33.48 O HETATM 1936 O HOH A 270 24.465 33.640 38.393 1.00 30.28 O HETATM 1937 O HOH A 271 38.437 41.823 2.129 1.00 38.62 O HETATM 1938 O HOH A 272 30.479 20.425 -6.197 1.00 37.87 O HETATM 1939 O HOH A 273 19.146 52.497 12.305 1.00 42.47 O HETATM 1940 O HOH A 274 33.072 17.639 15.066 1.00 30.24 O HETATM 1941 O HOH A 275 26.033 37.689 6.028 1.00 26.93 O HETATM 1942 O HOH A 276 38.698 28.175 29.251 1.00 29.82 O HETATM 1943 O HOH A 277 33.776 50.161 -4.064 1.00 46.17 O HETATM 1944 O HOH A 278 28.628 12.558 11.616 1.00 49.01 O HETATM 1945 O HOH A 279 27.852 44.047 31.083 1.00 48.18 O HETATM 1946 O HOH A 280 32.843 52.490 13.375 1.00 35.86 O HETATM 1947 O HOH A 281 30.368 38.481 30.453 1.00 31.23 O HETATM 1948 O HOH A 282 42.034 41.512 18.396 1.00 40.75 O HETATM 1949 O HOH A 283 20.937 22.874 24.966 1.00 38.52 O HETATM 1950 O HOH A 284 32.045 34.685 -11.738 1.00 33.44 O HETATM 1951 O HOH A 285 42.855 36.698 18.994 1.00 40.07 O HETATM 1952 O HOH A 286 18.329 31.617 3.040 1.00 39.49 O HETATM 1953 O AHOH A 287 21.268 21.101 15.217 0.50 29.90 O HETATM 1954 O BHOH A 287 22.918 20.358 15.384 0.50 21.76 O HETATM 1955 O HOH A 288 11.582 44.263 17.108 1.00 40.32 O HETATM 1956 O HOH A 289 27.807 17.834 4.592 1.00 39.39 O HETATM 1957 O HOH A 290 25.523 31.064 11.246 1.00 35.23 O HETATM 1958 O HOH A 291 20.725 49.682 16.787 1.00 36.44 O HETATM 1959 O HOH A 292 37.841 49.515 -9.845 1.00 39.16 O HETATM 1960 O HOH A 293 38.301 43.659 25.280 1.00 33.97 O HETATM 1961 O HOH A 294 40.063 33.231 20.042 1.00 46.60 O HETATM 1962 O HOH A 295 27.255 45.470 9.287 1.00 41.87 O HETATM 1963 O HOH A 296 42.410 33.086 6.345 1.00 39.24 O HETATM 1964 O HOH A 297 39.008 29.128 20.466 1.00 50.69 O HETATM 1965 O HOH A 298 21.916 24.745 -10.793 1.00 37.73 O HETATM 1966 O HOH A 299 34.897 46.325 10.280 1.00 38.31 O HETATM 1967 O HOH A 300 39.569 31.333 27.829 1.00 32.94 O HETATM 1968 O HOH A 301 11.923 46.950 29.083 1.00 30.53 O HETATM 1969 O HOH A 302 37.937 48.578 -13.022 1.00 44.38 O HETATM 1970 O HOH A 303 24.049 19.786 24.387 1.00 39.95 O HETATM 1971 O HOH A 304 38.578 27.302 -3.896 1.00 31.66 O HETATM 1972 O HOH A 305 42.408 32.516 -2.292 1.00 47.23 O HETATM 1973 O HOH A 306 40.100 30.574 32.630 1.00 36.27 O HETATM 1974 O HOH A 307 19.566 51.419 24.302 1.00 42.24 O HETATM 1975 O HOH A 308 30.434 41.786 -8.634 1.00 37.60 O HETATM 1976 O HOH A 309 18.449 29.277 -4.639 1.00 39.79 O HETATM 1977 O HOH A 310 15.823 46.835 33.923 1.00 38.18 O HETATM 1978 O HOH A 311 21.196 53.669 24.721 1.00 40.58 O HETATM 1979 O HOH A 312 27.028 39.982 6.440 1.00 47.41 O HETATM 1980 O HOH A 313 42.395 41.483 12.863 1.00 53.10 O HETATM 1981 O HOH A 314 31.400 45.219 7.833 1.00 45.64 O HETATM 1982 O HOH A 315 31.680 13.523 9.361 1.00 43.65 O HETATM 1983 O HOH A 316 25.351 38.162 34.035 1.00 43.98 O HETATM 1984 O HOH A 317 16.928 22.446 23.675 1.00 49.49 O HETATM 1985 O HOH A 318 20.014 47.240 18.224 1.00 22.80 O HETATM 1986 O HOH A 319 37.294 27.771 -1.665 1.00 22.25 O HETATM 1987 O HOH A 320 10.864 44.966 27.878 1.00 27.00 O HETATM 1988 O HOH A 321 26.929 42.320 -7.558 1.00 36.59 O HETATM 1989 O HOH A 322 21.785 42.079 34.039 1.00 38.29 O HETATM 1990 O HOH A 323 18.288 54.464 13.505 1.00 44.37 O HETATM 1991 O HOH A 324 24.077 29.934 8.898 1.00 36.58 O HETATM 1992 O HOH A 325 9.812 42.245 16.868 1.00 44.80 O HETATM 1993 O HOH A 326 39.300 26.651 5.201 1.00 39.25 O HETATM 1994 O HOH A 327 10.360 45.414 21.403 1.00 35.88 O HETATM 1995 O HOH A 328 32.273 53.343 -4.803 1.00 50.40 O HETATM 1996 O HOH A 329 20.124 48.168 10.674 1.00 42.78 O HETATM 1997 O HOH A 330 19.154 30.554 -13.179 1.00 34.41 O HETATM 1998 O HOH A 331 35.209 51.909 18.150 1.00 46.03 O HETATM 1999 O HOH A 332 40.103 48.856 -8.898 1.00 40.27 O HETATM 2000 O HOH A 333 29.452 20.446 42.997 1.00 62.39 O HETATM 2001 O HOH A 334 23.827 26.310 5.577 1.00 42.95 O HETATM 2002 O HOH A 335 31.499 21.381 26.892 1.00 45.84 O HETATM 2003 O HOH A 336 39.341 26.717 22.068 1.00 49.20 O HETATM 2004 O HOH A 337 20.258 22.466 11.191 1.00 55.49 O HETATM 2005 O HOH A 338 9.830 45.465 30.894 1.00 37.58 O HETATM 2006 O HOH A 339 16.279 30.935 34.634 1.00 33.38 O HETATM 2007 O HOH A 340 36.475 49.419 22.535 1.00 49.39 O HETATM 2008 O HOH A 341 16.920 40.707 35.347 1.00 44.55 O HETATM 2009 O HOH A 342 27.290 31.801 -15.182 1.00 50.78 O HETATM 2010 O HOH A 343 19.150 53.370 16.485 1.00 47.26 O HETATM 2011 O HOH A 344 28.490 21.988 -11.257 1.00 40.20 O HETATM 2012 O HOH A 345 27.146 19.818 14.602 1.00 46.00 O HETATM 2013 O HOH A 346 16.059 51.192 21.860 1.00 37.15 O HETATM 2014 O HOH A 347 39.464 33.293 -5.896 1.00 40.91 O HETATM 2015 O HOH A 348 26.493 48.470 27.320 1.00 45.89 O HETATM 2016 O HOH A 349 37.304 38.294 8.680 1.00 46.27 O HETATM 2017 O HOH A 350 43.230 46.652 18.992 1.00 54.86 O HETATM 2018 O HOH A 351 40.741 33.399 8.483 1.00 42.10 O HETATM 2019 O HOH A 352 26.738 43.720 6.040 1.00 49.38 O HETATM 2020 O HOH A 353 24.617 17.004 2.604 1.00 45.51 O HETATM 2021 O HOH A 354 13.320 48.582 33.481 1.00 49.37 O HETATM 2022 O HOH A 355 13.249 33.814 26.496 1.00 38.97 O HETATM 2023 O HOH A 356 38.683 45.069 10.611 1.00 45.12 O HETATM 2024 O HOH A 357 34.435 20.901 1.360 1.00 42.02 O HETATM 2025 O HOH A 358 40.267 28.882 7.149 1.00 42.26 O HETATM 2026 O HOH A 359 38.659 24.251 8.186 1.00 40.01 O HETATM 2027 O HOH A 360 39.947 36.077 8.847 1.00 48.77 O HETATM 2028 O HOH A 361 17.221 28.784 17.393 1.00 39.54 O HETATM 2029 O HOH A 362 40.305 29.210 35.381 1.00 53.48 O HETATM 2030 O HOH A 363 30.507 17.061 15.901 1.00 55.43 O HETATM 2031 O HOH A 364 28.880 48.317 2.076 1.00 53.26 O HETATM 2032 O HOH A 365 13.053 30.551 19.765 1.00 50.73 O HETATM 2033 O HOH A 366 35.927 39.118 -9.500 1.00 47.40 O HETATM 2034 O HOH A 367 37.239 50.348 14.342 1.00 48.07 O HETATM 2035 O HOH A 368 26.125 21.964 16.825 1.00 51.79 O HETATM 2036 O HOH A 369 20.273 21.593 27.359 1.00 51.77 O HETATM 2037 O HOH A 370 37.749 26.733 25.933 1.00 45.46 O HETATM 2038 O HOH A 371 18.219 49.949 10.779 1.00 53.68 O HETATM 2039 O HOH A 372 41.626 27.309 0.973 1.00 53.36 O HETATM 2040 O HOH A 373 38.091 44.219 0.071 1.00 52.30 O HETATM 2041 O HOH A 374 42.900 44.618 -3.094 1.00 49.75 O HETATM 2042 O HOH A 375 18.330 26.170 16.674 1.00 58.88 O HETATM 2043 O HOH A 376 15.898 23.704 29.537 1.00 46.94 O HETATM 2044 O HOH A 377 14.430 23.267 27.385 1.00 56.87 O HETATM 2045 O HOH A 378 41.717 35.148 5.257 1.00 49.50 O HETATM 2046 O HOH A 379 8.592 46.626 26.792 1.00 40.67 O HETATM 2047 O HOH A 380 24.245 24.687 17.606 1.00 49.03 O HETATM 2048 O HOH A 381 17.529 52.149 28.444 1.00 43.56 O HETATM 2049 O HOH A 382 27.011 56.517 14.040 1.00 50.68 O CONECT 1903 1904 1905 1906 1907 CONECT 1904 1903 CONECT 1905 1903 CONECT 1906 1903 CONECT 1907 1903 CONECT 1908 1909 1910 1911 1912 CONECT 1909 1908 CONECT 1910 1908 CONECT 1911 1908 CONECT 1912 1908 MASTER 372 0 2 11 10 0 4 6 1995 1 10 20 END