HEADER VIRAL PROTEIN 07-MAR-97 1VPN TITLE UNASSEMBLED POLYOMAVIRUS VP1 PENTAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYOMAVIRUS VP1 PENTAMER; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MURINE POLYOMAVIRUS; SOURCE 3 ORGANISM_TAXID: 10634; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRUS COAT PROTEIN, VIRUS ASSEMBLY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.STEHLE,S.C.HARRISON REVDAT 3 09-AUG-23 1VPN 1 REMARK REVDAT 2 24-FEB-09 1VPN 1 VERSN REVDAT 1 15-MAY-97 1VPN 0 JRNL AUTH T.STEHLE,S.C.HARRISON JRNL TITL HIGH-RESOLUTION STRUCTURE OF A POLYOMAVIRUS JRNL TITL 2 VP1-OLIGOSACCHARIDE COMPLEX: IMPLICATIONS FOR ASSEMBLY AND JRNL TITL 3 RECEPTOR BINDING. JRNL REF EMBO J. V. 16 5139 1997 JRNL REFN ISSN 0261-4189 JRNL PMID 9305654 JRNL DOI 10.1093/EMBOJ/16.16.5139 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.STEHLE,S.J.GAMBLIN,Y.YAN,S.C.HARRISON REMARK 1 TITL THE STRUCTURE OF SIMIAN VIRUS 40 REFINED AT 3.1 A RESOLUTION REMARK 1 REF STRUCTURE V. 4 165 1996 REMARK 1 REFN ISSN 0969-2126 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.STEHLE,S.C.HARRISON REMARK 1 TITL CRYSTAL STRUCTURES OF MURINE POLYOMAVIRUS IN COMPLEX WITH REMARK 1 TITL 2 STRAIGHT-CHAIN AND BRANCHED-CHAIN SIALYLOLIGOSACCHARIDE REMARK 1 TITL 3 RECEPTOR FRAGMENTS REMARK 1 REF STRUCTURE V. 4 183 1996 REMARK 1 REFN ISSN 0969-2126 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.STEHLE,Y.YAN,T.L.BENJAMIN,S.C.HARRISON REMARK 1 TITL STRUCTURE OF MURINE POLYOMAVIRUS COMPLEXED WITH AN REMARK 1 TITL 2 OLIGOSACCHARIDE RECEPTOR FRAGMENT REMARK 1 REF NATURE V. 369 160 1994 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.2 REMARK 3 NUMBER OF REFLECTIONS : 172107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11134 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 2096 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 20.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.360 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : UNRESTRAINED REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VPN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177089. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : DEC-94 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : WIGGLER REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 172107 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30200 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: POLYOMAVIRUS VP1 PENTAMER (PDB ENTRY 1SID) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROP: 1.0 M AMMONIUM PHOSPHATE PH 8.0 REMARK 280 2.5 & ETHANOL 8-10 MG/ML PROTEIN RESERVOIR: 2.0 M AMMONIUM REMARK 280 PHOSPHATE PH 8.0 5 % ETHANOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.26667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.53333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.53333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.26667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE COORDINATE SET CONSISTS OF FIVE VP1 MOLECULES THAT FORM REMARK 300 A PENTAMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 47920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 105310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -286.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 383.64925 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -33.26667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 317 REMARK 465 PRO A 318 REMARK 465 TYR A 319 REMARK 465 PRO A 320 REMARK 465 ASN C 317 REMARK 465 PRO C 318 REMARK 465 TYR C 319 REMARK 465 PRO C 320 REMARK 465 ASN D 317 REMARK 465 PRO D 318 REMARK 465 TYR D 319 REMARK 465 PRO D 320 REMARK 465 ASN E 317 REMARK 465 PRO E 318 REMARK 465 TYR E 319 REMARK 465 PRO E 320 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 290 CB VAL A 290 CG1 0.170 REMARK 500 VAL B 290 CB VAL B 290 CG1 0.156 REMARK 500 VAL B 290 CB VAL B 290 CG2 0.127 REMARK 500 VAL C 290 CB VAL C 290 CG1 0.134 REMARK 500 VAL D 290 CB VAL D 290 CG1 0.159 REMARK 500 VAL E 290 CB VAL E 290 CG1 0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 290 CG1 - CB - CG2 ANGL. DEV. = -13.9 DEGREES REMARK 500 VAL B 290 CG1 - CB - CG2 ANGL. DEV. = -12.0 DEGREES REMARK 500 VAL C 290 CG1 - CB - CG2 ANGL. DEV. = -12.3 DEGREES REMARK 500 VAL D 290 CG1 - CB - CG2 ANGL. DEV. = -13.5 DEGREES REMARK 500 VAL E 290 CG1 - CB - CG2 ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 37 -145.20 -109.94 REMARK 500 GLU A 110 -64.32 -91.13 REMARK 500 VAL A 207 -151.44 -130.62 REMARK 500 LYS A 233 -134.68 -123.81 REMARK 500 LEU B 37 -145.38 -111.77 REMARK 500 LYS B 151 -156.24 -139.42 REMARK 500 VAL B 207 -152.01 -128.69 REMARK 500 LYS B 233 -135.52 -128.27 REMARK 500 ASN B 317 110.42 -34.25 REMARK 500 MET C 34 48.69 -71.78 REMARK 500 LEU C 37 -138.09 -110.30 REMARK 500 LEU C 108 -61.66 -135.54 REMARK 500 THR C 113 39.70 -97.92 REMARK 500 LEU C 177 119.14 -170.10 REMARK 500 VAL C 207 -151.69 -128.64 REMARK 500 LYS C 233 -134.97 -128.57 REMARK 500 LEU D 37 -142.37 -112.10 REMARK 500 LEU D 108 -62.13 -124.50 REMARK 500 THR D 113 40.92 -102.13 REMARK 500 VAL D 207 -151.44 -124.73 REMARK 500 LYS D 233 -136.30 -128.14 REMARK 500 LEU E 37 -140.89 -116.31 REMARK 500 LEU E 108 -50.29 -121.26 REMARK 500 VAL E 207 -149.63 -126.01 REMARK 500 LYS E 233 -136.70 -124.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL E 290 10.07 REMARK 500 REMARK 500 REMARK: NULL DBREF 1VPN A 32 320 UNP P49302 COA1_POVMP 32 320 DBREF 1VPN B 32 320 UNP P49302 COA1_POVMP 32 320 DBREF 1VPN C 32 320 UNP P49302 COA1_POVMP 32 320 DBREF 1VPN D 32 320 UNP P49302 COA1_POVMP 32 320 DBREF 1VPN E 32 320 UNP P49302 COA1_POVMP 32 320 SEQRES 1 A 289 GLY GLY MET GLU VAL LEU ASP LEU VAL THR GLY PRO ASP SEQRES 2 A 289 SER VAL THR GLU ILE GLU ALA PHE LEU ASN PRO ARG MET SEQRES 3 A 289 GLY GLN PRO PRO THR PRO GLU SER LEU THR GLU GLY GLY SEQRES 4 A 289 GLN TYR TYR GLY TRP SER ARG GLY ILE ASN LEU ALA THR SEQRES 5 A 289 SER ASP THR GLU ASP SER PRO GLY ASN ASN THR LEU PRO SEQRES 6 A 289 THR TRP SER MET ALA LYS LEU GLN LEU PRO MET LEU ASN SEQRES 7 A 289 GLU ASP LEU THR CYS ASP THR LEU GLN MET TRP GLU ALA SEQRES 8 A 289 VAL SER VAL LYS THR GLU VAL VAL GLY SER GLY SER LEU SEQRES 9 A 289 LEU ASP VAL HIS GLY PHE ASN LYS PRO THR ASP THR VAL SEQRES 10 A 289 ASN THR LYS GLY ILE SER THR PRO VAL GLU GLY SER GLN SEQRES 11 A 289 TYR HIS VAL PHE ALA VAL GLY GLY GLU PRO LEU ASP LEU SEQRES 12 A 289 GLN GLY LEU VAL THR ASP ALA ARG THR LYS TYR LYS GLU SEQRES 13 A 289 GLU GLY VAL VAL THR ILE LYS THR ILE THR LYS LYS ASP SEQRES 14 A 289 MET VAL ASN LYS ASP GLN VAL LEU ASN PRO ILE SER LYS SEQRES 15 A 289 ALA LYS LEU ASP LYS ASP GLY MET TYR PRO VAL GLU ILE SEQRES 16 A 289 TRP HIS PRO ASP PRO ALA LYS ASN GLU ASN THR ARG TYR SEQRES 17 A 289 PHE GLY ASN TYR THR GLY GLY THR THR THR PRO PRO VAL SEQRES 18 A 289 LEU GLN PHE THR ASN THR LEU THR THR VAL LEU LEU ASP SEQRES 19 A 289 GLU ASN GLY VAL GLY PRO LEU CYS LYS GLY GLU GLY LEU SEQRES 20 A 289 TYR LEU SER CYS VAL ASP ILE MET GLY TRP ARG VAL THR SEQRES 21 A 289 ARG ASN TYR ASP VAL HIS HIS TRP ARG GLY LEU PRO ARG SEQRES 22 A 289 TYR PHE LYS ILE THR LEU ARG LYS ARG TRP VAL LYS ASN SEQRES 23 A 289 PRO TYR PRO SEQRES 1 B 289 GLY GLY MET GLU VAL LEU ASP LEU VAL THR GLY PRO ASP SEQRES 2 B 289 SER VAL THR GLU ILE GLU ALA PHE LEU ASN PRO ARG MET SEQRES 3 B 289 GLY GLN PRO PRO THR PRO GLU SER LEU THR GLU GLY GLY SEQRES 4 B 289 GLN TYR TYR GLY TRP SER ARG GLY ILE ASN LEU ALA THR SEQRES 5 B 289 SER ASP THR GLU ASP SER PRO GLY ASN ASN THR LEU PRO SEQRES 6 B 289 THR TRP SER MET ALA LYS LEU GLN LEU PRO MET LEU ASN SEQRES 7 B 289 GLU ASP LEU THR CYS ASP THR LEU GLN MET TRP GLU ALA SEQRES 8 B 289 VAL SER VAL LYS THR GLU VAL VAL GLY SER GLY SER LEU SEQRES 9 B 289 LEU ASP VAL HIS GLY PHE ASN LYS PRO THR ASP THR VAL SEQRES 10 B 289 ASN THR LYS GLY ILE SER THR PRO VAL GLU GLY SER GLN SEQRES 11 B 289 TYR HIS VAL PHE ALA VAL GLY GLY GLU PRO LEU ASP LEU SEQRES 12 B 289 GLN GLY LEU VAL THR ASP ALA ARG THR LYS TYR LYS GLU SEQRES 13 B 289 GLU GLY VAL VAL THR ILE LYS THR ILE THR LYS LYS ASP SEQRES 14 B 289 MET VAL ASN LYS ASP GLN VAL LEU ASN PRO ILE SER LYS SEQRES 15 B 289 ALA LYS LEU ASP LYS ASP GLY MET TYR PRO VAL GLU ILE SEQRES 16 B 289 TRP HIS PRO ASP PRO ALA LYS ASN GLU ASN THR ARG TYR SEQRES 17 B 289 PHE GLY ASN TYR THR GLY GLY THR THR THR PRO PRO VAL SEQRES 18 B 289 LEU GLN PHE THR ASN THR LEU THR THR VAL LEU LEU ASP SEQRES 19 B 289 GLU ASN GLY VAL GLY PRO LEU CYS LYS GLY GLU GLY LEU SEQRES 20 B 289 TYR LEU SER CYS VAL ASP ILE MET GLY TRP ARG VAL THR SEQRES 21 B 289 ARG ASN TYR ASP VAL HIS HIS TRP ARG GLY LEU PRO ARG SEQRES 22 B 289 TYR PHE LYS ILE THR LEU ARG LYS ARG TRP VAL LYS ASN SEQRES 23 B 289 PRO TYR PRO SEQRES 1 C 289 GLY GLY MET GLU VAL LEU ASP LEU VAL THR GLY PRO ASP SEQRES 2 C 289 SER VAL THR GLU ILE GLU ALA PHE LEU ASN PRO ARG MET SEQRES 3 C 289 GLY GLN PRO PRO THR PRO GLU SER LEU THR GLU GLY GLY SEQRES 4 C 289 GLN TYR TYR GLY TRP SER ARG GLY ILE ASN LEU ALA THR SEQRES 5 C 289 SER ASP THR GLU ASP SER PRO GLY ASN ASN THR LEU PRO SEQRES 6 C 289 THR TRP SER MET ALA LYS LEU GLN LEU PRO MET LEU ASN SEQRES 7 C 289 GLU ASP LEU THR CYS ASP THR LEU GLN MET TRP GLU ALA SEQRES 8 C 289 VAL SER VAL LYS THR GLU VAL VAL GLY SER GLY SER LEU SEQRES 9 C 289 LEU ASP VAL HIS GLY PHE ASN LYS PRO THR ASP THR VAL SEQRES 10 C 289 ASN THR LYS GLY ILE SER THR PRO VAL GLU GLY SER GLN SEQRES 11 C 289 TYR HIS VAL PHE ALA VAL GLY GLY GLU PRO LEU ASP LEU SEQRES 12 C 289 GLN GLY LEU VAL THR ASP ALA ARG THR LYS TYR LYS GLU SEQRES 13 C 289 GLU GLY VAL VAL THR ILE LYS THR ILE THR LYS LYS ASP SEQRES 14 C 289 MET VAL ASN LYS ASP GLN VAL LEU ASN PRO ILE SER LYS SEQRES 15 C 289 ALA LYS LEU ASP LYS ASP GLY MET TYR PRO VAL GLU ILE SEQRES 16 C 289 TRP HIS PRO ASP PRO ALA LYS ASN GLU ASN THR ARG TYR SEQRES 17 C 289 PHE GLY ASN TYR THR GLY GLY THR THR THR PRO PRO VAL SEQRES 18 C 289 LEU GLN PHE THR ASN THR LEU THR THR VAL LEU LEU ASP SEQRES 19 C 289 GLU ASN GLY VAL GLY PRO LEU CYS LYS GLY GLU GLY LEU SEQRES 20 C 289 TYR LEU SER CYS VAL ASP ILE MET GLY TRP ARG VAL THR SEQRES 21 C 289 ARG ASN TYR ASP VAL HIS HIS TRP ARG GLY LEU PRO ARG SEQRES 22 C 289 TYR PHE LYS ILE THR LEU ARG LYS ARG TRP VAL LYS ASN SEQRES 23 C 289 PRO TYR PRO SEQRES 1 D 289 GLY GLY MET GLU VAL LEU ASP LEU VAL THR GLY PRO ASP SEQRES 2 D 289 SER VAL THR GLU ILE GLU ALA PHE LEU ASN PRO ARG MET SEQRES 3 D 289 GLY GLN PRO PRO THR PRO GLU SER LEU THR GLU GLY GLY SEQRES 4 D 289 GLN TYR TYR GLY TRP SER ARG GLY ILE ASN LEU ALA THR SEQRES 5 D 289 SER ASP THR GLU ASP SER PRO GLY ASN ASN THR LEU PRO SEQRES 6 D 289 THR TRP SER MET ALA LYS LEU GLN LEU PRO MET LEU ASN SEQRES 7 D 289 GLU ASP LEU THR CYS ASP THR LEU GLN MET TRP GLU ALA SEQRES 8 D 289 VAL SER VAL LYS THR GLU VAL VAL GLY SER GLY SER LEU SEQRES 9 D 289 LEU ASP VAL HIS GLY PHE ASN LYS PRO THR ASP THR VAL SEQRES 10 D 289 ASN THR LYS GLY ILE SER THR PRO VAL GLU GLY SER GLN SEQRES 11 D 289 TYR HIS VAL PHE ALA VAL GLY GLY GLU PRO LEU ASP LEU SEQRES 12 D 289 GLN GLY LEU VAL THR ASP ALA ARG THR LYS TYR LYS GLU SEQRES 13 D 289 GLU GLY VAL VAL THR ILE LYS THR ILE THR LYS LYS ASP SEQRES 14 D 289 MET VAL ASN LYS ASP GLN VAL LEU ASN PRO ILE SER LYS SEQRES 15 D 289 ALA LYS LEU ASP LYS ASP GLY MET TYR PRO VAL GLU ILE SEQRES 16 D 289 TRP HIS PRO ASP PRO ALA LYS ASN GLU ASN THR ARG TYR SEQRES 17 D 289 PHE GLY ASN TYR THR GLY GLY THR THR THR PRO PRO VAL SEQRES 18 D 289 LEU GLN PHE THR ASN THR LEU THR THR VAL LEU LEU ASP SEQRES 19 D 289 GLU ASN GLY VAL GLY PRO LEU CYS LYS GLY GLU GLY LEU SEQRES 20 D 289 TYR LEU SER CYS VAL ASP ILE MET GLY TRP ARG VAL THR SEQRES 21 D 289 ARG ASN TYR ASP VAL HIS HIS TRP ARG GLY LEU PRO ARG SEQRES 22 D 289 TYR PHE LYS ILE THR LEU ARG LYS ARG TRP VAL LYS ASN SEQRES 23 D 289 PRO TYR PRO SEQRES 1 E 289 GLY GLY MET GLU VAL LEU ASP LEU VAL THR GLY PRO ASP SEQRES 2 E 289 SER VAL THR GLU ILE GLU ALA PHE LEU ASN PRO ARG MET SEQRES 3 E 289 GLY GLN PRO PRO THR PRO GLU SER LEU THR GLU GLY GLY SEQRES 4 E 289 GLN TYR TYR GLY TRP SER ARG GLY ILE ASN LEU ALA THR SEQRES 5 E 289 SER ASP THR GLU ASP SER PRO GLY ASN ASN THR LEU PRO SEQRES 6 E 289 THR TRP SER MET ALA LYS LEU GLN LEU PRO MET LEU ASN SEQRES 7 E 289 GLU ASP LEU THR CYS ASP THR LEU GLN MET TRP GLU ALA SEQRES 8 E 289 VAL SER VAL LYS THR GLU VAL VAL GLY SER GLY SER LEU SEQRES 9 E 289 LEU ASP VAL HIS GLY PHE ASN LYS PRO THR ASP THR VAL SEQRES 10 E 289 ASN THR LYS GLY ILE SER THR PRO VAL GLU GLY SER GLN SEQRES 11 E 289 TYR HIS VAL PHE ALA VAL GLY GLY GLU PRO LEU ASP LEU SEQRES 12 E 289 GLN GLY LEU VAL THR ASP ALA ARG THR LYS TYR LYS GLU SEQRES 13 E 289 GLU GLY VAL VAL THR ILE LYS THR ILE THR LYS LYS ASP SEQRES 14 E 289 MET VAL ASN LYS ASP GLN VAL LEU ASN PRO ILE SER LYS SEQRES 15 E 289 ALA LYS LEU ASP LYS ASP GLY MET TYR PRO VAL GLU ILE SEQRES 16 E 289 TRP HIS PRO ASP PRO ALA LYS ASN GLU ASN THR ARG TYR SEQRES 17 E 289 PHE GLY ASN TYR THR GLY GLY THR THR THR PRO PRO VAL SEQRES 18 E 289 LEU GLN PHE THR ASN THR LEU THR THR VAL LEU LEU ASP SEQRES 19 E 289 GLU ASN GLY VAL GLY PRO LEU CYS LYS GLY GLU GLY LEU SEQRES 20 E 289 TYR LEU SER CYS VAL ASP ILE MET GLY TRP ARG VAL THR SEQRES 21 E 289 ARG ASN TYR ASP VAL HIS HIS TRP ARG GLY LEU PRO ARG SEQRES 22 E 289 TYR PHE LYS ILE THR LEU ARG LYS ARG TRP VAL LYS ASN SEQRES 23 E 289 PRO TYR PRO FORMUL 6 HOH *2096(H2 O) HELIX 1 1 GLY A 70 TYR A 72 5 3 HELIX 2 2 ASN A 92 THR A 94 5 3 HELIX 3 3 SER A 132 LEU A 136 5 5 HELIX 4 4 ILE A 193 THR A 197 1 5 HELIX 5 5 ASN A 203 GLN A 206 5 4 HELIX 6 6 GLY B 70 TYR B 72 5 3 HELIX 7 7 ASN B 92 THR B 94 5 3 HELIX 8 8 SER B 132 LEU B 136 5 5 HELIX 9 9 ILE B 193 THR B 197 1 5 HELIX 10 10 ASN B 203 GLN B 206 5 4 HELIX 11 11 GLY C 70 TYR C 72 5 3 HELIX 12 12 ASN C 92 THR C 94 5 3 HELIX 13 13 SER C 132 LEU C 136 5 5 HELIX 14 14 ILE C 193 THR C 197 1 5 HELIX 15 15 ASN C 203 GLN C 206 5 4 HELIX 16 16 GLY D 70 TYR D 72 5 3 HELIX 17 17 ASN D 92 THR D 94 5 3 HELIX 18 18 SER D 132 LEU D 136 5 5 HELIX 19 19 ILE D 193 THR D 197 1 5 HELIX 20 20 ASN D 203 GLN D 206 5 4 HELIX 21 21 GLY E 70 TYR E 72 5 3 HELIX 22 22 ASN E 92 THR E 94 5 3 HELIX 23 23 SER E 132 LEU E 136 5 5 HELIX 24 24 ILE E 193 THR E 197 1 5 HELIX 25 25 ASN E 203 GLN E 206 5 4 SHEET 1 A 3 VAL A 46 LEU A 53 0 SHEET 2 A 3 PRO A 303 VAL A 315 -1 N LEU A 310 O THR A 47 SHEET 3 A 3 LEU A 117 VAL A 130 -1 N VAL A 130 O PRO A 303 SHEET 1 B 5 SER A 99 GLN A 104 0 SHEET 2 B 5 GLY A 277 ILE A 285 -1 N CYS A 282 O SER A 99 SHEET 3 B 5 GLN A 161 GLY A 168 -1 N GLY A 168 O TYR A 279 SHEET 4 B 5 THR A 237 THR A 244 -1 N THR A 244 O GLN A 161 SHEET 5 B 5 VAL E 252 THR E 256 -1 N PHE E 255 O GLY A 241 SHEET 1 C 3 LYS A 213 LYS A 215 0 SHEET 2 C 3 ASP A 173 GLY A 176 -1 N LEU A 174 O ALA A 214 SHEET 3 C 3 TRP A 227 PRO A 229 -1 N HIS A 228 O GLN A 175 SHEET 1 D 5 VAL A 252 THR A 256 0 SHEET 2 D 5 THR B 237 THR B 244 -1 N TYR B 243 O LEU A 253 SHEET 3 D 5 GLN B 161 GLY B 168 -1 N VAL B 167 O ARG B 238 SHEET 4 D 5 GLY B 277 ILE B 285 -1 N ILE B 285 O TYR B 162 SHEET 5 D 5 SER B 99 GLN B 104 -1 N LEU B 103 O LEU B 278 SHEET 1 E 3 VAL B 46 LEU B 53 0 SHEET 2 E 3 ARG B 304 LYS B 316 -1 N LEU B 310 O THR B 47 SHEET 3 E 3 THR B 116 VAL B 129 -1 N GLU B 128 O TYR B 305 SHEET 1 F 3 LYS B 213 LEU B 216 0 SHEET 2 F 3 LEU B 172 GLY B 176 -1 N LEU B 174 O ALA B 214 SHEET 3 F 3 TRP B 227 PRO B 229 -1 N HIS B 228 O GLN B 175 SHEET 1 G 5 VAL B 252 THR B 256 0 SHEET 2 G 5 THR C 237 THR C 244 -1 N TYR C 243 O LEU B 253 SHEET 3 G 5 GLN C 161 GLY C 168 -1 N VAL C 167 O ARG C 238 SHEET 4 G 5 GLY C 277 ILE C 285 -1 N ILE C 285 O TYR C 162 SHEET 5 G 5 SER C 99 GLN C 104 -1 N LEU C 103 O LEU C 278 SHEET 1 H 3 VAL C 46 LEU C 53 0 SHEET 2 H 3 ARG C 304 VAL C 315 -1 N LEU C 310 O THR C 47 SHEET 3 H 3 LEU C 117 VAL C 129 -1 N GLU C 128 O TYR C 305 SHEET 1 I 3 LYS C 213 LEU C 216 0 SHEET 2 I 3 LEU C 172 GLY C 176 -1 N LEU C 174 O ALA C 214 SHEET 3 I 3 TRP C 227 PRO C 229 -1 N HIS C 228 O GLN C 175 SHEET 1 J 5 VAL C 252 THR C 256 0 SHEET 2 J 5 THR D 237 THR D 244 -1 N TYR D 243 O LEU C 253 SHEET 3 J 5 GLN D 161 GLY D 168 -1 N VAL D 167 O ARG D 238 SHEET 4 J 5 GLY D 277 ILE D 285 -1 N ILE D 285 O TYR D 162 SHEET 5 J 5 SER D 99 GLN D 104 -1 N LEU D 103 O LEU D 278 SHEET 1 K 3 VAL D 46 LEU D 53 0 SHEET 2 K 3 ARG D 304 VAL D 315 -1 N LEU D 310 O THR D 47 SHEET 3 K 3 LEU D 117 VAL D 129 -1 N GLU D 128 O TYR D 305 SHEET 1 L 3 LYS D 213 LEU D 216 0 SHEET 2 L 3 LEU D 172 GLY D 176 -1 N LEU D 174 O ALA D 214 SHEET 3 L 3 TRP D 227 PRO D 229 -1 N HIS D 228 O GLN D 175 SHEET 1 M 5 VAL D 252 THR D 256 0 SHEET 2 M 5 THR E 237 THR E 244 -1 N TYR E 243 O LEU D 253 SHEET 3 M 5 GLN E 161 GLY E 168 -1 N VAL E 167 O ARG E 238 SHEET 4 M 5 GLY E 277 ILE E 285 -1 N ILE E 285 O TYR E 162 SHEET 5 M 5 SER E 99 GLN E 104 -1 N LEU E 103 O LEU E 278 SHEET 1 N 3 VAL E 46 LEU E 53 0 SHEET 2 N 3 ARG E 304 VAL E 315 -1 N LEU E 310 O THR E 47 SHEET 3 N 3 LEU E 117 VAL E 129 -1 N GLU E 128 O TYR E 305 SHEET 1 O 3 LYS E 213 LEU E 216 0 SHEET 2 O 3 LEU E 172 GLY E 176 -1 N LEU E 174 O ALA E 214 SHEET 3 O 3 TRP E 227 PRO E 229 -1 N HIS E 228 O GLN E 175 SHEET 1 P 2 ILE A 285 VAL A 290 0 SHEET 2 P 2 HIS A 297 GLY A 301 -1 N ARG A 300 O MET A 286 SHEET 1 Q 2 ILE B 285 VAL B 290 0 SHEET 2 Q 2 HIS B 297 GLY B 301 -1 N ARG B 300 O MET B 286 SHEET 1 R 2 ILE C 285 VAL C 290 0 SHEET 2 R 2 HIS C 297 GLY C 301 -1 N ARG C 300 O MET C 286 SHEET 1 S 2 ILE D 285 VAL D 290 0 SHEET 2 S 2 HIS D 297 GLY D 301 -1 N ARG D 300 O MET D 286 SHEET 1 T 2 ILE E 285 VAL E 290 0 SHEET 2 T 2 HIS E 297 GLY E 301 -1 N ARG E 300 O MET E 286 CISPEP 1 THR A 62 PRO A 63 0 -2.07 CISPEP 2 THR B 62 PRO B 63 0 0.15 CISPEP 3 THR C 62 PRO C 63 0 -1.38 CISPEP 4 THR D 62 PRO D 63 0 -0.08 CISPEP 5 THR E 62 PRO E 63 0 2.45 CRYST1 221.500 221.500 99.800 90.00 90.00 120.00 P 31 2 1 30 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004515 0.002607 0.000000 0.00000 SCALE2 0.000000 0.005213 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010020 0.00000