data_1VPZ # _entry.id 1VPZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VPZ pdb_00001vpz 10.2210/pdb1vpz/pdb RCSB RCSB002047 ? ? WWPDB D_1000002047 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB 9946807 . unspecified TargetDB 357779 . unspecified # _pdbx_database_status.entry_id 1VPZ _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2004-11-24 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of the global regulatory protein CsrA from Pseudomonas putida at 2.05 A resolution reveals a new fold.' _citation.journal_abbrev Proteins _citation.journal_volume 61 _citation.page_first 449 _citation.page_last 453 _citation.year 2005 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16104018 _citation.pdbx_database_id_DOI 10.1002/prot.20502 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rife, C.' 1 ? primary 'Schwarzenbacher, R.' 2 ? primary 'McMullan, D.' 3 ? primary 'Abdubek, P.' 4 ? primary 'Ambing, E.' 5 ? primary 'Axelrod, H.' 6 ? primary 'Biorac, T.' 7 ? primary 'Canaves, J.M.' 8 ? primary 'Chiu, H.J.' 9 ? primary 'Deacon, A.M.' 10 ? primary 'DiDonato, M.' 11 ? primary 'Elsliger, M.A.' 12 ? primary 'Godzik, A.' 13 ? primary 'Grittini, C.' 14 ? primary 'Grzechnik, S.K.' 15 ? primary 'Hale, J.' 16 ? primary 'Hampton, E.' 17 ? primary 'Han, G.W.' 18 ? primary 'Haugen, J.' 19 ? primary 'Hornsby, M.' 20 ? primary 'Jaroszewski, L.' 21 ? primary 'Klock, H.E.' 22 ? primary 'Koesema, E.' 23 ? primary 'Kreusch, A.' 24 ? primary 'Kuhn, P.' 25 ? primary 'Lesley, S.A.' 26 ? primary 'Miller, M.D.' 27 ? primary 'Moy, K.' 28 ? primary 'Nigoghossian, E.' 29 ? primary 'Paulsen, J.' 30 ? primary 'Quijano, K.' 31 ? primary 'Reyes, R.' 32 ? primary 'Sims, E.' 33 ? primary 'Spraggon, G.' 34 ? primary 'Stevens, R.C.' 35 ? primary 'van den Bedem, H.' 36 ? primary 'Velasquez, J.' 37 ? primary 'Vincent, J.' 38 ? primary 'White, A.' 39 ? primary 'Wolf, G.' 40 ? primary 'Xu, Q.' 41 ? primary 'Hodgson, K.O.' 42 ? primary 'Wooley, J.' 43 ? primary 'Wilson, I.A.' 44 ? # _cell.length_a 49.066 _cell.length_b 56.669 _cell.length_c 98.533 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 1VPZ _cell.pdbx_unique_axis ? _cell.Z_PDB 16 # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 1VPZ _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 20 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Carbon storage regulator homolog' 8522.276 2 ? ? ? ? 2 water nat water 18.015 23 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHH(MSE)LILTRRVGETL(MSE)VGDDVTVTVLGVKGNQVRIGVNAPKEVAVHREEIYQRIQKEKD QEPNH ; _entity_poly.pdbx_seq_one_letter_code_can MGSDKIHHHHHHMLILTRRVGETLMVGDDVTVTVLGVKGNQVRIGVNAPKEVAVHREEIYQRIQKEKDQEPNH _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 357779 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MSE n 1 14 LEU n 1 15 ILE n 1 16 LEU n 1 17 THR n 1 18 ARG n 1 19 ARG n 1 20 VAL n 1 21 GLY n 1 22 GLU n 1 23 THR n 1 24 LEU n 1 25 MSE n 1 26 VAL n 1 27 GLY n 1 28 ASP n 1 29 ASP n 1 30 VAL n 1 31 THR n 1 32 VAL n 1 33 THR n 1 34 VAL n 1 35 LEU n 1 36 GLY n 1 37 VAL n 1 38 LYS n 1 39 GLY n 1 40 ASN n 1 41 GLN n 1 42 VAL n 1 43 ARG n 1 44 ILE n 1 45 GLY n 1 46 VAL n 1 47 ASN n 1 48 ALA n 1 49 PRO n 1 50 LYS n 1 51 GLU n 1 52 VAL n 1 53 ALA n 1 54 VAL n 1 55 HIS n 1 56 ARG n 1 57 GLU n 1 58 GLU n 1 59 ILE n 1 60 TYR n 1 61 GLN n 1 62 ARG n 1 63 ILE n 1 64 GLN n 1 65 LYS n 1 66 GLU n 1 67 LYS n 1 68 ASP n 1 69 GLN n 1 70 GLU n 1 71 PRO n 1 72 ASN n 1 73 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pseudomonas _entity_src_gen.pdbx_gene_src_gene csrA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas aeruginosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CSRA_PSEAE _struct_ref.pdbx_db_accession O69078 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MLILTRRVGETLMVGDDVTVTVLGVKGNQVRIGVNAPKEVAVHREEIYQRIQKEKDQEPNH _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VPZ A 13 ? 73 ? O69078 1 ? 61 ? 1 61 2 1 1VPZ B 13 ? 73 ? O69078 1 ? 61 ? 1 61 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VPZ MSE A 1 ? UNP O69078 ? ? 'expression tag' -11 1 1 1VPZ GLY A 2 ? UNP O69078 ? ? 'expression tag' -10 2 1 1VPZ SER A 3 ? UNP O69078 ? ? 'expression tag' -9 3 1 1VPZ ASP A 4 ? UNP O69078 ? ? 'expression tag' -8 4 1 1VPZ LYS A 5 ? UNP O69078 ? ? 'expression tag' -7 5 1 1VPZ ILE A 6 ? UNP O69078 ? ? 'expression tag' -6 6 1 1VPZ HIS A 7 ? UNP O69078 ? ? 'expression tag' -5 7 1 1VPZ HIS A 8 ? UNP O69078 ? ? 'expression tag' -4 8 1 1VPZ HIS A 9 ? UNP O69078 ? ? 'expression tag' -3 9 1 1VPZ HIS A 10 ? UNP O69078 ? ? 'expression tag' -2 10 1 1VPZ HIS A 11 ? UNP O69078 ? ? 'expression tag' -1 11 1 1VPZ HIS A 12 ? UNP O69078 ? ? 'expression tag' 0 12 1 1VPZ MSE A 13 ? UNP O69078 MET 1 'modified residue' 1 13 1 1VPZ MSE A 25 ? UNP O69078 MET 13 'modified residue' 13 14 2 1VPZ MSE B 1 ? UNP O69078 ? ? 'expression tag' -11 15 2 1VPZ GLY B 2 ? UNP O69078 ? ? 'expression tag' -10 16 2 1VPZ SER B 3 ? UNP O69078 ? ? 'expression tag' -9 17 2 1VPZ ASP B 4 ? UNP O69078 ? ? 'expression tag' -8 18 2 1VPZ LYS B 5 ? UNP O69078 ? ? 'expression tag' -7 19 2 1VPZ ILE B 6 ? UNP O69078 ? ? 'expression tag' -6 20 2 1VPZ HIS B 7 ? UNP O69078 ? ? 'expression tag' -5 21 2 1VPZ HIS B 8 ? UNP O69078 ? ? 'expression tag' -4 22 2 1VPZ HIS B 9 ? UNP O69078 ? ? 'expression tag' -3 23 2 1VPZ HIS B 10 ? UNP O69078 ? ? 'expression tag' -2 24 2 1VPZ HIS B 11 ? UNP O69078 ? ? 'expression tag' -1 25 2 1VPZ HIS B 12 ? UNP O69078 ? ? 'expression tag' 0 26 2 1VPZ MSE B 13 ? UNP O69078 MET 1 'modified residue' 1 27 2 1VPZ MSE B 25 ? UNP O69078 MET 13 'modified residue' 13 28 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1VPZ # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 54.29 _exptl_crystal.density_Matthews 2.71 _exptl_crystal.description ? _exptl_crystal.density_meas ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION,SITTING DROP,NANODROP' _exptl_crystal_grow.pH 3.7 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '30.0% MPD, 0.1M Phosphate Citrate pH 3.7, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 ? ? 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.details 'fixed-height exit beam, toroidal focusing mirror' _diffrn_detector.pdbx_collection_date 2004-11-10 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double-crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.979508 1.0 2 0.961114 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 5.0.2 'ALS BEAMLINE 5.0.2' 0.979508 ALS ? 2 SYNCHROTRON 5.0.2 'ALS BEAMLINE 5.0.2' ? ALS 0.979508,0.961114 # _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.050 _reflns.d_resolution_low 27.23 _reflns.number_obs 8735 _reflns.percent_possible_obs 97.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 11.4 _reflns.B_iso_Wilson_estimate 47.80 _reflns.pdbx_redundancy 3.5 _reflns.pdbx_Rsym_value 0.075 _reflns.entry_id 1VPZ _reflns.number_all ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.05 _reflns_shell.d_res_low 2.10 _reflns_shell.percent_possible_all 85.4 _reflns_shell.pdbx_Rsym_value 0.365 _reflns_shell.pdbx_redundancy 2.8 _reflns_shell.number_unique_all 562 _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 2.05 _refine.ls_d_res_low 24.59 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_obs 8281 _refine.ls_number_reflns_R_free 422 _refine.ls_percent_reflns_R_free 4.8 _refine.ls_percent_reflns_obs 97.47 _refine.ls_R_factor_obs 0.22092 _refine.ls_R_factor_R_work 0.21848 _refine.ls_R_factor_R_free 0.27545 _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.B_iso_mean 43.776 _refine.aniso_B[1][1] 4.76 _refine.aniso_B[2][2] -1.02 _refine.aniso_B[3][3] -3.74 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.details 'NO DENSITY FOR RESIDUES A56-62, B54-62. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_overall_ESU_R 0.202 _refine.pdbx_overall_ESU_R_Free 0.191 _refine.overall_SU_ML 0.170 _refine.overall_SU_B 13.773 _refine.correlation_coeff_Fo_to_Fc 0.950 _refine.correlation_coeff_Fo_to_Fc_free 0.930 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.entry_id 1VPZ _refine.ls_R_factor_all ? _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 868 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 23 _refine_hist.number_atoms_total 891 _refine_hist.d_res_high 2.05 _refine_hist.d_res_low 24.59 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 887 0.017 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 876 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1198 1.568 1.943 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2002 0.775 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 111 7.227 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40 37.225 22.500 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 164 15.803 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11 21.452 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 148 0.090 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 970 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 173 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 126 0.192 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 837 0.199 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 593 0.090 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 28 0.138 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 5 0.235 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 25 0.209 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 2 0.090 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 569 2.230 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 238 0.615 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 907 3.085 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 336 5.515 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 291 8.061 11.000 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 397 0.170 0.200 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 'medium positional' B 767 0.63 0.50 1 'X-RAY DIFFRACTION' 1 ? ? ? 1 'medium thermal' B 767 0.99 2.00 1 'X-RAY DIFFRACTION' 2 ? ? ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.051 _refine_ls_shell.d_res_low 2.104 _refine_ls_shell.percent_reflns_obs 84.89 _refine_ls_shell.number_reflns_R_work 519 _refine_ls_shell.R_factor_R_work 0.302 _refine_ls_shell.percent_reflns_R_free 6.65 _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.R_factor_R_free 0.4 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 B 1 2 A # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 1 4 B 1 B 53 B MSE 13 . B LYS 65 . 1 ? 2 1 4 A 1 A 53 A MSE 13 . A LYS 65 . 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? _struct_ncs_ens.point_group ? # _struct.entry_id 1VPZ _struct.title 'Crystal structure of a putative carbon storage regulator protein (csra, pa0905) from pseudomonas aeruginosa at 2.05 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Csra-like fold, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, rna binding protein ; _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.entry_id 1VPZ # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 57 ? LYS A 67 ? GLU A 45 LYS A 55 1 ? 11 HELX_P HELX_P2 2 GLU B 57 ? GLN B 64 ? GLU B 45 GLN B 52 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HIS 12 C ? ? ? 1_555 A MSE 13 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale2 covale both ? A MSE 13 C ? ? ? 1_555 A LEU 14 N ? ? A MSE 1 A LEU 2 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale3 covale both ? A LEU 24 C ? ? ? 1_555 A MSE 25 N ? ? A LEU 12 A MSE 13 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale4 covale both ? A MSE 25 C ? ? ? 1_555 A VAL 26 N ? ? A MSE 13 A VAL 14 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale5 covale both ? B HIS 12 C ? ? ? 1_555 B MSE 13 N ? ? B HIS 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale6 covale both ? B MSE 13 C ? ? ? 1_555 B LEU 14 N ? ? B MSE 1 B LEU 2 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale7 covale both ? B LEU 24 C ? ? ? 1_555 B MSE 25 N ? ? B LEU 12 B MSE 13 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale8 covale both ? B MSE 25 C ? ? ? 1_555 B VAL 26 N ? ? B MSE 13 B VAL 14 1_555 ? ? ? ? ? ? ? 1.335 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 14 ? ARG A 19 ? LEU A 2 ARG A 7 A 2 GLN B 41 ? ASN B 47 ? GLN B 29 ASN B 35 A 3 VAL B 30 ? LYS B 38 ? VAL B 18 LYS B 26 A 4 THR B 23 ? VAL B 26 ? THR B 11 VAL B 14 A 5 VAL A 54 ? ARG A 56 ? VAL A 42 ARG A 44 B 1 HIS B 11 ? ARG B 19 ? HIS B -1 ARG B 7 B 2 GLN A 41 ? PRO A 49 ? GLN A 29 PRO A 37 B 3 VAL A 30 ? LYS A 38 ? VAL A 18 LYS A 26 B 4 THR A 23 ? VAL A 26 ? THR A 11 VAL A 14 B 5 VAL B 54 ? ARG B 56 ? VAL B 42 ARG B 44 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 14 ? N LEU A 2 O VAL B 46 ? O VAL B 34 A 2 3 O GLN B 41 ? O GLN B 29 N LYS B 38 ? N LYS B 26 A 3 4 O VAL B 32 ? O VAL B 20 N LEU B 24 ? N LEU B 12 A 4 5 O MSE B 25 ? O MSE B 13 N HIS A 55 ? N HIS A 43 B 1 2 O LEU B 14 ? O LEU B 2 N VAL A 46 ? N VAL A 34 B 2 3 O ARG A 43 ? O ARG A 31 N GLY A 36 ? N GLY A 24 B 3 4 O VAL A 32 ? O VAL A 20 N LEU A 24 ? N LEU A 12 B 4 5 N MSE A 25 ? N MSE A 13 O HIS B 55 ? O HIS B 43 # _atom_sites.entry_id 1VPZ _atom_sites.fract_transf_matrix[1][1] 0.020381 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017646 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010149 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 ? ? ? A . n A 1 10 HIS 10 -2 ? ? ? A . n A 1 11 HIS 11 -1 -1 HIS HIS A . n A 1 12 HIS 12 0 0 HIS HIS A . n A 1 13 MSE 13 1 1 MSE MSE A . n A 1 14 LEU 14 2 2 LEU LEU A . n A 1 15 ILE 15 3 3 ILE ILE A . n A 1 16 LEU 16 4 4 LEU LEU A . n A 1 17 THR 17 5 5 THR THR A . n A 1 18 ARG 18 6 6 ARG ARG A . n A 1 19 ARG 19 7 7 ARG ARG A . n A 1 20 VAL 20 8 8 VAL VAL A . n A 1 21 GLY 21 9 9 GLY GLY A . n A 1 22 GLU 22 10 10 GLU GLU A . n A 1 23 THR 23 11 11 THR THR A . n A 1 24 LEU 24 12 12 LEU LEU A . n A 1 25 MSE 25 13 13 MSE MSE A . n A 1 26 VAL 26 14 14 VAL VAL A . n A 1 27 GLY 27 15 15 GLY GLY A . n A 1 28 ASP 28 16 16 ASP ASP A . n A 1 29 ASP 29 17 17 ASP ASP A . n A 1 30 VAL 30 18 18 VAL VAL A . n A 1 31 THR 31 19 19 THR THR A . n A 1 32 VAL 32 20 20 VAL VAL A . n A 1 33 THR 33 21 21 THR THR A . n A 1 34 VAL 34 22 22 VAL VAL A . n A 1 35 LEU 35 23 23 LEU LEU A . n A 1 36 GLY 36 24 24 GLY GLY A . n A 1 37 VAL 37 25 25 VAL VAL A . n A 1 38 LYS 38 26 26 LYS LYS A . n A 1 39 GLY 39 27 27 GLY GLY A . n A 1 40 ASN 40 28 28 ASN ASN A . n A 1 41 GLN 41 29 29 GLN GLN A . n A 1 42 VAL 42 30 30 VAL VAL A . n A 1 43 ARG 43 31 31 ARG ARG A . n A 1 44 ILE 44 32 32 ILE ILE A . n A 1 45 GLY 45 33 33 GLY GLY A . n A 1 46 VAL 46 34 34 VAL VAL A . n A 1 47 ASN 47 35 35 ASN ASN A . n A 1 48 ALA 48 36 36 ALA ALA A . n A 1 49 PRO 49 37 37 PRO PRO A . n A 1 50 LYS 50 38 38 LYS LYS A . n A 1 51 GLU 51 39 39 GLU GLU A . n A 1 52 VAL 52 40 40 VAL VAL A . n A 1 53 ALA 53 41 41 ALA ALA A . n A 1 54 VAL 54 42 42 VAL VAL A . n A 1 55 HIS 55 43 43 HIS HIS A . n A 1 56 ARG 56 44 44 ARG ARG A . n A 1 57 GLU 57 45 45 GLU GLU A . n A 1 58 GLU 58 46 46 GLU GLU A . n A 1 59 ILE 59 47 47 ILE ILE A . n A 1 60 TYR 60 48 48 TYR TYR A . n A 1 61 GLN 61 49 49 GLN GLN A . n A 1 62 ARG 62 50 50 ARG ARG A . n A 1 63 ILE 63 51 51 ILE ILE A . n A 1 64 GLN 64 52 52 GLN GLN A . n A 1 65 LYS 65 53 53 LYS LYS A . n A 1 66 GLU 66 54 54 GLU GLU A . n A 1 67 LYS 67 55 55 LYS LYS A . n A 1 68 ASP 68 56 ? ? ? A . n A 1 69 GLN 69 57 ? ? ? A . n A 1 70 GLU 70 58 ? ? ? A . n A 1 71 PRO 71 59 ? ? ? A . n A 1 72 ASN 72 60 ? ? ? A . n A 1 73 HIS 73 61 ? ? ? A . n B 1 1 MSE 1 -11 ? ? ? B . n B 1 2 GLY 2 -10 ? ? ? B . n B 1 3 SER 3 -9 ? ? ? B . n B 1 4 ASP 4 -8 ? ? ? B . n B 1 5 LYS 5 -7 ? ? ? B . n B 1 6 ILE 6 -6 ? ? ? B . n B 1 7 HIS 7 -5 ? ? ? B . n B 1 8 HIS 8 -4 ? ? ? B . n B 1 9 HIS 9 -3 ? ? ? B . n B 1 10 HIS 10 -2 -2 HIS HIS B . n B 1 11 HIS 11 -1 -1 HIS HIS B . n B 1 12 HIS 12 0 0 HIS HIS B . n B 1 13 MSE 13 1 1 MSE MSE B . n B 1 14 LEU 14 2 2 LEU LEU B . n B 1 15 ILE 15 3 3 ILE ILE B . n B 1 16 LEU 16 4 4 LEU LEU B . n B 1 17 THR 17 5 5 THR THR B . n B 1 18 ARG 18 6 6 ARG ARG B . n B 1 19 ARG 19 7 7 ARG ARG B . n B 1 20 VAL 20 8 8 VAL VAL B . n B 1 21 GLY 21 9 9 GLY GLY B . n B 1 22 GLU 22 10 10 GLU GLU B . n B 1 23 THR 23 11 11 THR THR B . n B 1 24 LEU 24 12 12 LEU LEU B . n B 1 25 MSE 25 13 13 MSE MSE B . n B 1 26 VAL 26 14 14 VAL VAL B . n B 1 27 GLY 27 15 15 GLY GLY B . n B 1 28 ASP 28 16 16 ASP ASP B . n B 1 29 ASP 29 17 17 ASP ASP B . n B 1 30 VAL 30 18 18 VAL VAL B . n B 1 31 THR 31 19 19 THR THR B . n B 1 32 VAL 32 20 20 VAL VAL B . n B 1 33 THR 33 21 21 THR THR B . n B 1 34 VAL 34 22 22 VAL VAL B . n B 1 35 LEU 35 23 23 LEU LEU B . n B 1 36 GLY 36 24 24 GLY GLY B . n B 1 37 VAL 37 25 25 VAL VAL B . n B 1 38 LYS 38 26 26 LYS LYS B . n B 1 39 GLY 39 27 27 GLY GLY B . n B 1 40 ASN 40 28 28 ASN ASN B . n B 1 41 GLN 41 29 29 GLN GLN B . n B 1 42 VAL 42 30 30 VAL VAL B . n B 1 43 ARG 43 31 31 ARG ARG B . n B 1 44 ILE 44 32 32 ILE ILE B . n B 1 45 GLY 45 33 33 GLY GLY B . n B 1 46 VAL 46 34 34 VAL VAL B . n B 1 47 ASN 47 35 35 ASN ASN B . n B 1 48 ALA 48 36 36 ALA ALA B . n B 1 49 PRO 49 37 37 PRO PRO B . n B 1 50 LYS 50 38 38 LYS LYS B . n B 1 51 GLU 51 39 39 GLU GLU B . n B 1 52 VAL 52 40 40 VAL VAL B . n B 1 53 ALA 53 41 41 ALA ALA B . n B 1 54 VAL 54 42 42 VAL VAL B . n B 1 55 HIS 55 43 43 HIS HIS B . n B 1 56 ARG 56 44 44 ARG ARG B . n B 1 57 GLU 57 45 45 GLU GLU B . n B 1 58 GLU 58 46 46 GLU GLU B . n B 1 59 ILE 59 47 47 ILE ILE B . n B 1 60 TYR 60 48 48 TYR TYR B . n B 1 61 GLN 61 49 49 GLN GLN B . n B 1 62 ARG 62 50 50 ARG ARG B . n B 1 63 ILE 63 51 51 ILE ILE B . n B 1 64 GLN 64 52 52 GLN GLN B . n B 1 65 LYS 65 53 53 LYS LYS B . n B 1 66 GLU 66 54 ? ? ? B . n B 1 67 LYS 67 55 ? ? ? B . n B 1 68 ASP 68 56 ? ? ? B . n B 1 69 GLN 69 57 ? ? ? B . n B 1 70 GLU 70 58 ? ? ? B . n B 1 71 PRO 71 59 ? ? ? B . n B 1 72 ASN 72 60 ? ? ? B . n B 1 73 HIS 73 61 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 62 2 HOH HOH A . C 2 HOH 2 63 4 HOH HOH A . C 2 HOH 3 64 5 HOH HOH A . C 2 HOH 4 65 11 HOH HOH A . C 2 HOH 5 66 13 HOH HOH A . C 2 HOH 6 67 16 HOH HOH A . C 2 HOH 7 68 17 HOH HOH A . C 2 HOH 8 69 18 HOH HOH A . C 2 HOH 9 70 22 HOH HOH A . C 2 HOH 10 71 23 HOH HOH A . C 2 HOH 11 72 24 HOH HOH A . D 2 HOH 1 62 1 HOH HOH B . D 2 HOH 2 63 3 HOH HOH B . D 2 HOH 3 64 6 HOH HOH B . D 2 HOH 4 65 7 HOH HOH B . D 2 HOH 5 66 8 HOH HOH B . D 2 HOH 6 67 9 HOH HOH B . D 2 HOH 7 68 10 HOH HOH B . D 2 HOH 8 69 12 HOH HOH B . D 2 HOH 9 70 14 HOH HOH B . D 2 HOH 10 71 15 HOH HOH B . D 2 HOH 11 72 19 HOH HOH B . D 2 HOH 12 73 20 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 25 A MSE 13 ? MET SELENOMETHIONINE 3 B MSE 13 B MSE 1 ? MET SELENOMETHIONINE 4 B MSE 25 B MSE 13 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4080 ? 1 MORE -25 ? 1 'SSA (A^2)' 6850 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-12-14 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' pdbx_database_related 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_database_related.db_name' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 . refined 1.3750 28.2070 36.4930 -0.1793 -0.0818 -0.1425 0.0058 0.0026 -0.0117 3.1940 2.0674 5.3954 -0.9537 0.5596 -0.2403 -0.0972 0.1000 -0.0028 -0.0845 0.0426 -0.1059 0.2217 0.0139 -0.1244 'X-RAY DIFFRACTION' 2 . refined -0.8920 32.7110 37.3080 -0.2554 -0.0472 -0.1302 0.0059 0.0103 -0.0173 2.3546 3.1313 4.9730 -0.2458 -0.3428 -0.5645 -0.0555 0.0644 -0.0089 0.0052 0.0399 -0.1521 -0.0940 -0.0459 -0.0921 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 11 A 66 ALL A -1 A 54 'X-RAY DIFFRACTION' ? 2 2 B 10 B 65 ALL B -2 B 53 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' '4.2)' ? 2 SOLVE phasing . ? 3 REFMAC refinement . ? 4 CCP4 'data scaling' '(SCALA)' ? 5 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS -1 ? CG ? A HIS 11 CG 2 1 Y 1 A HIS -1 ? ND1 ? A HIS 11 ND1 3 1 Y 1 A HIS -1 ? CD2 ? A HIS 11 CD2 4 1 Y 1 A HIS -1 ? CE1 ? A HIS 11 CE1 5 1 Y 1 A HIS -1 ? NE2 ? A HIS 11 NE2 6 1 Y 1 A LEU 2 ? CD1 ? A LEU 14 CD1 7 1 Y 1 A LEU 2 ? CD2 ? A LEU 14 CD2 8 1 Y 1 A ASP 16 ? OD1 ? A ASP 28 OD1 9 1 Y 1 A ASP 16 ? OD2 ? A ASP 28 OD2 10 1 Y 1 A ASP 17 ? CG ? A ASP 29 CG 11 1 Y 1 A ASP 17 ? OD1 ? A ASP 29 OD1 12 1 Y 1 A ASP 17 ? OD2 ? A ASP 29 OD2 13 1 Y 1 A LYS 26 ? CE ? A LYS 38 CE 14 1 Y 1 A LYS 26 ? NZ ? A LYS 38 NZ 15 1 Y 1 A LYS 38 ? CG ? A LYS 50 CG 16 1 Y 1 A LYS 38 ? CD ? A LYS 50 CD 17 1 Y 1 A LYS 38 ? CE ? A LYS 50 CE 18 1 Y 1 A LYS 38 ? NZ ? A LYS 50 NZ 19 1 Y 1 A LYS 53 ? CE ? A LYS 65 CE 20 1 Y 1 A LYS 53 ? NZ ? A LYS 65 NZ 21 1 Y 1 B LYS 26 ? CG ? B LYS 38 CG 22 1 Y 1 B LYS 26 ? CD ? B LYS 38 CD 23 1 Y 1 B LYS 26 ? CE ? B LYS 38 CE 24 1 Y 1 B LYS 26 ? NZ ? B LYS 38 NZ 25 1 Y 1 B LYS 38 ? CG ? B LYS 50 CG 26 1 Y 1 B LYS 38 ? CD ? B LYS 50 CD 27 1 Y 1 B LYS 38 ? CE ? B LYS 50 CE 28 1 Y 1 B LYS 38 ? NZ ? B LYS 50 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -11 ? A MSE 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A HIS -3 ? A HIS 9 10 1 Y 1 A HIS -2 ? A HIS 10 11 1 Y 1 A ASP 56 ? A ASP 68 12 1 Y 1 A GLN 57 ? A GLN 69 13 1 Y 1 A GLU 58 ? A GLU 70 14 1 Y 1 A PRO 59 ? A PRO 71 15 1 Y 1 A ASN 60 ? A ASN 72 16 1 Y 1 A HIS 61 ? A HIS 73 17 1 Y 1 B MSE -11 ? B MSE 1 18 1 Y 1 B GLY -10 ? B GLY 2 19 1 Y 1 B SER -9 ? B SER 3 20 1 Y 1 B ASP -8 ? B ASP 4 21 1 Y 1 B LYS -7 ? B LYS 5 22 1 Y 1 B ILE -6 ? B ILE 6 23 1 Y 1 B HIS -5 ? B HIS 7 24 1 Y 1 B HIS -4 ? B HIS 8 25 1 Y 1 B HIS -3 ? B HIS 9 26 1 Y 1 B GLU 54 ? B GLU 66 27 1 Y 1 B LYS 55 ? B LYS 67 28 1 Y 1 B ASP 56 ? B ASP 68 29 1 Y 1 B GLN 57 ? B GLN 69 30 1 Y 1 B GLU 58 ? B GLU 70 31 1 Y 1 B PRO 59 ? B PRO 71 32 1 Y 1 B ASN 60 ? B ASN 72 33 1 Y 1 B HIS 61 ? B HIS 73 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #