HEADER LYASE 04-JAN-05 1VQT TITLE CRYSTAL STRUCTURE OF OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (TM0332) TITLE 2 FROM THERMOTOGA MARITIMA AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: OROTIDINE 5'-PHOSPHATE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OMP DECARBOXYLASE, OMPDCASE, OMPDECASE; COMPND 5 EC: 4.1.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: PYRF, TM0332; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM0332, OROTIDINE 5'-PHOSPHATE DECARBOXYLASE, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 20-SEP-23 1VQT 1 REMARK REVDAT 4 25-JAN-23 1VQT 1 REMARK SEQADV REVDAT 3 13-JUL-11 1VQT 1 VERSN REVDAT 2 24-FEB-09 1VQT 1 VERSN REVDAT 1 18-JAN-05 1VQT 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF OROTIDINE 5'-PHOSPHATE DECARBOXYLASE JRNL TITL 2 (TM0332) FROM THERMOTOGA MARITIMA AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 14180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 758 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1039 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1457 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 55.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.07000 REMARK 3 B22 (A**2) : -3.30000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.36000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.256 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1512 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1462 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2025 ; 1.671 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3370 ; 0.839 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 189 ; 6.244 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;35.102 ;23.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 262 ;14.754 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.956 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 235 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1621 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 289 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 298 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1404 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 709 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 906 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 46 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.494 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.233 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1027 ; 0.995 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 388 ; 0.257 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1528 ; 1.476 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 607 ; 2.256 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 497 ; 3.323 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8629 -0.5404 6.3329 REMARK 3 T TENSOR REMARK 3 T11: -0.4204 T22: -0.2166 REMARK 3 T33: -0.2047 T12: 0.0579 REMARK 3 T13: 0.0040 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 1.4522 L22: 3.8075 REMARK 3 L33: 6.7371 L12: 0.2878 REMARK 3 L13: 0.6096 L23: -0.5939 REMARK 3 S TENSOR REMARK 3 S11: -0.1414 S12: 0.1884 S13: 0.0434 REMARK 3 S21: -0.5243 S22: -0.2380 S23: 0.1188 REMARK 3 S31: -0.1238 S32: -0.2235 S33: 0.3794 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VQT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000002067. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17410 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.810 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 28.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.41 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1EIX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.0% PEG-20000, 0.1M MES PH 6.5, REMARK 280 VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.34400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.77500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.34400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.77500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 39.23807 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.21596 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 211 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 MET A 154 REMARK 465 GLU A 155 REMARK 465 VAL A 156 REMARK 465 LYS A 157 REMARK 465 ALA A 158 REMARK 465 ASP A 159 REMARK 465 ASP A 160 REMARK 465 GLN A 161 REMARK 465 LYS A 162 REMARK 465 MET A 199 REMARK 465 ARG A 200 REMARK 465 LEU A 201 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 LYS A 44 CE NZ REMARK 470 ASN A 46 CB CG OD1 ND2 REMARK 470 ARG A 64 CD NE CZ NH1 NH2 REMARK 470 GLU A 86 CD OE1 OE2 REMARK 470 ASP A 96 CG OD1 OD2 REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 LYS A 124 CD CE NZ REMARK 470 LYS A 137 NZ REMARK 470 GLU A 141 CD OE1 OE2 REMARK 470 LYS A 142 CD CE NZ REMARK 470 LYS A 144 CB CG CD CE NZ REMARK 470 LYS A 146 CD CE NZ REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 LYS A 171 CD CE NZ REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 LYS A 194 CD CE NZ REMARK 470 ARG A 195 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 52 71.26 -115.86 REMARK 500 ILE A 173 -61.02 -123.01 REMARK 500 LYS A 197 9.82 -58.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 210 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282207 RELATED DB: TARGETDB DBREF 1VQT A 1 201 UNP Q9WYG7 PYRF_THEMA 1 201 SEQADV 1VQT MET A -11 UNP Q9WYG7 EXPRESSION TAG SEQADV 1VQT GLY A -10 UNP Q9WYG7 EXPRESSION TAG SEQADV 1VQT SER A -9 UNP Q9WYG7 EXPRESSION TAG SEQADV 1VQT ASP A -8 UNP Q9WYG7 EXPRESSION TAG SEQADV 1VQT LYS A -7 UNP Q9WYG7 EXPRESSION TAG SEQADV 1VQT ILE A -6 UNP Q9WYG7 EXPRESSION TAG SEQADV 1VQT HIS A -5 UNP Q9WYG7 EXPRESSION TAG SEQADV 1VQT HIS A -4 UNP Q9WYG7 EXPRESSION TAG SEQADV 1VQT HIS A -3 UNP Q9WYG7 EXPRESSION TAG SEQADV 1VQT HIS A -2 UNP Q9WYG7 EXPRESSION TAG SEQADV 1VQT HIS A -1 UNP Q9WYG7 EXPRESSION TAG SEQADV 1VQT HIS A 0 UNP Q9WYG7 EXPRESSION TAG SEQRES 1 A 213 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 213 THR PRO VAL LEU SER LEU ASP MET GLU ASP PRO ILE ARG SEQRES 3 A 213 PHE ILE ASP GLU ASN GLY SER PHE GLU VAL VAL LYS VAL SEQRES 4 A 213 GLY HIS ASN LEU ALA ILE HIS GLY LYS LYS ILE PHE ASP SEQRES 5 A 213 GLU LEU ALA LYS ARG ASN LEU LYS ILE ILE LEU ASP LEU SEQRES 6 A 213 LYS PHE CYS ASP ILE PRO SER THR VAL GLU ARG SER ILE SEQRES 7 A 213 LYS SER TRP ASP HIS PRO ALA ILE ILE GLY PHE THR VAL SEQRES 8 A 213 HIS SER CYS ALA GLY TYR GLU SER VAL GLU ARG ALA LEU SEQRES 9 A 213 SER ALA THR ASP LYS HIS VAL PHE VAL VAL VAL LYS LEU SEQRES 10 A 213 THR SER MET GLU GLY SER LEU GLU ASP TYR MET ASP ARG SEQRES 11 A 213 ILE GLU LYS LEU ASN LYS LEU GLY CYS ASP PHE VAL LEU SEQRES 12 A 213 PRO GLY PRO TRP ALA LYS ALA LEU ARG GLU LYS ILE LYS SEQRES 13 A 213 GLY LYS ILE LEU VAL PRO GLY ILE ARG MET GLU VAL LYS SEQRES 14 A 213 ALA ASP ASP GLN LYS ASP VAL VAL THR LEU GLU GLU MET SEQRES 15 A 213 LYS GLY ILE ALA ASN PHE ALA VAL LEU GLY ARG GLU ILE SEQRES 16 A 213 TYR LEU SER GLU ASN PRO ARG GLU LYS ILE LYS ARG ILE SEQRES 17 A 213 LYS GLU MET ARG LEU HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO A 207 4 HET EDO A 208 4 HET EDO A 209 4 HET EDO A 210 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 9(C2 H6 O2) FORMUL 11 HOH *61(H2 O) HELIX 1 1 ASP A 11 GLY A 20 1 10 HELIX 2 2 GLY A 28 ILE A 33 1 6 HELIX 3 3 LYS A 36 LYS A 44 1 9 HELIX 4 4 ILE A 58 ASP A 70 1 13 HELIX 5 5 GLY A 84 THR A 95 1 12 HELIX 6 6 SER A 111 LEU A 125 1 15 HELIX 7 7 PRO A 132 ARG A 140 1 9 HELIX 8 8 LEU A 167 LYS A 171 1 5 HELIX 9 9 GLY A 180 LEU A 185 1 6 HELIX 10 10 ASN A 188 LYS A 197 1 10 SHEET 1 A 9 THR A 2 SER A 6 0 SHEET 2 A 9 VAL A 24 VAL A 27 1 O LYS A 26 N LEU A 5 SHEET 3 A 9 LYS A 48 PHE A 55 1 O ASP A 52 N VAL A 27 SHEET 4 A 9 ILE A 74 HIS A 80 1 O GLY A 76 N LEU A 51 SHEET 5 A 9 HIS A 98 VAL A 102 1 O PHE A 100 N PHE A 77 SHEET 6 A 9 ASP A 128 VAL A 130 1 O VAL A 130 N VAL A 101 SHEET 7 A 9 ILE A 147 VAL A 149 1 O LEU A 148 N PHE A 129 SHEET 8 A 9 PHE A 176 LEU A 179 1 O VAL A 178 N VAL A 149 SHEET 9 A 9 THR A 2 SER A 6 1 N VAL A 4 O LEU A 179 SHEET 1 B 2 ILE A 152 ARG A 153 0 SHEET 2 B 2 VAL A 165 THR A 166 1 O VAL A 165 N ARG A 153 SSBOND 1 CYS A 82 CYS A 82 1555 2656 2.31 SITE 1 AC1 3 LYS A 36 LYS A 37 ASP A 40 SITE 1 AC2 2 VAL A 164 HOH A 248 SITE 1 AC3 5 ASP A 52 LYS A 54 LEU A 148 PRO A 150 SITE 2 AC3 5 EDO A 209 SITE 1 AC4 3 LEU A 47 ALA A 73 HOH A 269 SITE 1 AC5 2 HIS A -1 HIS A 0 SITE 1 AC6 2 THR A 166 GLU A 168 SITE 1 AC7 5 SER A 60 THR A 61 ARG A 64 ARG A 181 SITE 2 AC7 5 EDO A 210 SITE 1 AC8 5 SER A 6 ASP A 8 LYS A 26 EDO A 204 SITE 2 AC8 5 HOH A 246 SITE 1 AC9 3 ASP A 8 ARG A 64 EDO A 208 CRYST1 70.688 85.550 48.725 90.00 130.20 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014147 0.000000 0.011955 0.00000 SCALE2 0.000000 0.011689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026870 0.00000