data_1VR3 # _entry.id 1VR3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VR3 pdb_00001vr3 10.2210/pdb1vr3/pdb RCSB RCSB002075 ? ? WWPDB D_1000002075 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 354741 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1VR3 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-01-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of acireductone dioxygenase (ARD) from Mus musculus at 2.06 angstrom resolution.' _citation.journal_abbrev Proteins _citation.journal_volume 64 _citation.page_first 808 _citation.page_last 813 _citation.year 2006 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16783794 _citation.pdbx_database_id_DOI 10.1002/prot.20947 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, Q.' 1 ? primary 'Schwarzenbacher, R.' 2 ? primary 'Krishna, S.S.' 3 ? primary 'McMullan, D.' 4 ? primary 'Agarwalla, S.' 5 ? primary 'Quijano, K.' 6 ? primary 'Abdubek, P.' 7 ? primary 'Ambing, E.' 8 ? primary 'Axelrod, H.' 9 ? primary 'Biorac, T.' 10 ? primary 'Canaves, J.M.' 11 ? primary 'Chiu, H.J.' 12 ? primary 'Elsliger, M.A.' 13 ? primary 'Grittini, C.' 14 ? primary 'Grzechnik, S.K.' 15 ? primary 'DiDonato, M.' 16 ? primary 'Hale, J.' 17 ? primary 'Hampton, E.' 18 ? primary 'Han, G.W.' 19 ? primary 'Haugen, J.' 20 ? primary 'Hornsby, M.' 21 ? primary 'Jaroszewski, L.' 22 ? primary 'Klock, H.E.' 23 ? primary 'Knuth, M.W.' 24 ? primary 'Koesema, E.' 25 ? primary 'Kreusch, A.' 26 ? primary 'Kuhn, P.' 27 ? primary 'Miller, M.D.' 28 ? primary 'Moy, K.' 29 ? primary 'Nigoghossian, E.' 30 ? primary 'Paulsen, J.' 31 ? primary 'Reyes, R.' 32 ? primary 'Rife, C.' 33 ? primary 'Spraggon, G.' 34 ? primary 'Stevens, R.C.' 35 ? primary 'van den Bedem, H.' 36 ? primary 'Velasquez, J.' 37 ? primary 'White, A.' 38 ? primary 'Wolf, G.' 39 ? primary 'Hodgson, K.O.' 40 ? primary 'Wooley, J.' 41 ? primary 'Deacon, A.M.' 42 ? primary 'Godzik, A.' 43 ? primary 'Lesley, S.A.' 44 ? primary 'Wilson, I.A.' 45 ? # _cell.length_a 79.136 _cell.length_b 79.136 _cell.length_c 114.128 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 1VR3 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 1VR3 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 92 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Acireductone dioxygenase' 23485.158 1 1.13.11.- ? ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 3 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 4 non-polymer syn 'ISOPROPYL ALCOHOL' 60.095 1 ? ? ? ? 5 water nat water 18.015 169 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHH(MSE)VQAWY(MSE)DESTADPRKPHRAQPDRPVSLEQLRTLGVLYWKLDADKYENDPELEKIR K(MSE)RNYSW(MSE)DIITICKDTLPNYEEKIK(MSE)FFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRIS(MSE)E KGD(MSE)ITLPAGIYHRFTLDEKNYVKA(MSE)RLFVGEPVWTPYNRPADHFDARVQY(MSE)SFLEGTA ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMVQAWYMDESTADPRKPHRAQPDRPVSLEQLRTLGVLYWKLDADKYENDPELEKIRKMRNYSWMDIIT ICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRL FVGEPVWTPYNRPADHFDARVQYMSFLEGTA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 354741 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MSE n 1 14 VAL n 1 15 GLN n 1 16 ALA n 1 17 TRP n 1 18 TYR n 1 19 MSE n 1 20 ASP n 1 21 GLU n 1 22 SER n 1 23 THR n 1 24 ALA n 1 25 ASP n 1 26 PRO n 1 27 ARG n 1 28 LYS n 1 29 PRO n 1 30 HIS n 1 31 ARG n 1 32 ALA n 1 33 GLN n 1 34 PRO n 1 35 ASP n 1 36 ARG n 1 37 PRO n 1 38 VAL n 1 39 SER n 1 40 LEU n 1 41 GLU n 1 42 GLN n 1 43 LEU n 1 44 ARG n 1 45 THR n 1 46 LEU n 1 47 GLY n 1 48 VAL n 1 49 LEU n 1 50 TYR n 1 51 TRP n 1 52 LYS n 1 53 LEU n 1 54 ASP n 1 55 ALA n 1 56 ASP n 1 57 LYS n 1 58 TYR n 1 59 GLU n 1 60 ASN n 1 61 ASP n 1 62 PRO n 1 63 GLU n 1 64 LEU n 1 65 GLU n 1 66 LYS n 1 67 ILE n 1 68 ARG n 1 69 LYS n 1 70 MSE n 1 71 ARG n 1 72 ASN n 1 73 TYR n 1 74 SER n 1 75 TRP n 1 76 MSE n 1 77 ASP n 1 78 ILE n 1 79 ILE n 1 80 THR n 1 81 ILE n 1 82 CYS n 1 83 LYS n 1 84 ASP n 1 85 THR n 1 86 LEU n 1 87 PRO n 1 88 ASN n 1 89 TYR n 1 90 GLU n 1 91 GLU n 1 92 LYS n 1 93 ILE n 1 94 LYS n 1 95 MSE n 1 96 PHE n 1 97 PHE n 1 98 GLU n 1 99 GLU n 1 100 HIS n 1 101 LEU n 1 102 HIS n 1 103 LEU n 1 104 ASP n 1 105 GLU n 1 106 GLU n 1 107 ILE n 1 108 ARG n 1 109 TYR n 1 110 ILE n 1 111 LEU n 1 112 GLU n 1 113 GLY n 1 114 SER n 1 115 GLY n 1 116 TYR n 1 117 PHE n 1 118 ASP n 1 119 VAL n 1 120 ARG n 1 121 ASP n 1 122 LYS n 1 123 GLU n 1 124 ASP n 1 125 LYS n 1 126 TRP n 1 127 ILE n 1 128 ARG n 1 129 ILE n 1 130 SER n 1 131 MSE n 1 132 GLU n 1 133 LYS n 1 134 GLY n 1 135 ASP n 1 136 MSE n 1 137 ILE n 1 138 THR n 1 139 LEU n 1 140 PRO n 1 141 ALA n 1 142 GLY n 1 143 ILE n 1 144 TYR n 1 145 HIS n 1 146 ARG n 1 147 PHE n 1 148 THR n 1 149 LEU n 1 150 ASP n 1 151 GLU n 1 152 LYS n 1 153 ASN n 1 154 TYR n 1 155 VAL n 1 156 LYS n 1 157 ALA n 1 158 MSE n 1 159 ARG n 1 160 LEU n 1 161 PHE n 1 162 VAL n 1 163 GLY n 1 164 GLU n 1 165 PRO n 1 166 VAL n 1 167 TRP n 1 168 THR n 1 169 PRO n 1 170 TYR n 1 171 ASN n 1 172 ARG n 1 173 PRO n 1 174 ALA n 1 175 ASP n 1 176 HIS n 1 177 PHE n 1 178 ASP n 1 179 ALA n 1 180 ARG n 1 181 VAL n 1 182 GLN n 1 183 TYR n 1 184 MSE n 1 185 SER n 1 186 PHE n 1 187 LEU n 1 188 GLU n 1 189 GLY n 1 190 THR n 1 191 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MTND_MOUSE _struct_ref.pdbx_db_accession Q99JT9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVQAWYMDESTADPRKPHRAQPDRPVSLEQLRTLGVLYWKLDADKYENDPELEKIRKMRNYSWMDIITICKDTLPNYEEK IKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGEPVWTPYNR PADHFDARVQYMSFLEGTA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VR3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 191 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q99JT9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 179 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 179 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VR3 MSE A 1 ? UNP Q99JT9 ? ? 'expression tag' -11 1 1 1VR3 GLY A 2 ? UNP Q99JT9 ? ? 'expression tag' -10 2 1 1VR3 SER A 3 ? UNP Q99JT9 ? ? 'expression tag' -9 3 1 1VR3 ASP A 4 ? UNP Q99JT9 ? ? 'expression tag' -8 4 1 1VR3 LYS A 5 ? UNP Q99JT9 ? ? 'expression tag' -7 5 1 1VR3 ILE A 6 ? UNP Q99JT9 ? ? 'expression tag' -6 6 1 1VR3 HIS A 7 ? UNP Q99JT9 ? ? 'expression tag' -5 7 1 1VR3 HIS A 8 ? UNP Q99JT9 ? ? 'expression tag' -4 8 1 1VR3 HIS A 9 ? UNP Q99JT9 ? ? 'expression tag' -3 9 1 1VR3 HIS A 10 ? UNP Q99JT9 ? ? 'expression tag' -2 10 1 1VR3 HIS A 11 ? UNP Q99JT9 ? ? 'expression tag' -1 11 1 1VR3 HIS A 12 ? UNP Q99JT9 ? ? 'expression tag' 0 12 1 1VR3 MSE A 13 ? UNP Q99JT9 MET 1 'modified residue' 1 13 1 1VR3 MSE A 19 ? UNP Q99JT9 MET 7 'modified residue' 7 14 1 1VR3 MSE A 70 ? UNP Q99JT9 MET 58 'modified residue' 58 15 1 1VR3 MSE A 76 ? UNP Q99JT9 MET 64 'modified residue' 64 16 1 1VR3 MSE A 95 ? UNP Q99JT9 MET 83 'modified residue' 83 17 1 1VR3 MSE A 131 ? UNP Q99JT9 MET 119 'modified residue' 119 18 1 1VR3 MSE A 136 ? UNP Q99JT9 MET 124 'modified residue' 124 19 1 1VR3 MSE A 158 ? UNP Q99JT9 MET 146 'modified residue' 146 20 1 1VR3 MSE A 184 ? UNP Q99JT9 MET 172 'modified residue' 172 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IPA non-polymer . 'ISOPROPYL ALCOHOL' 2-PROPANOL 'C3 H8 O' 60.095 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1VR3 # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 66.57 _exptl_crystal.density_Matthews 3.71 _exptl_crystal.description ? _exptl_crystal.density_meas ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION,SITTING DROP,NANODROP' _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '5.0% Glycerol, 19.0% iso-Propanol, 19.0% PEG-4000, 0.1M Citrate pH 5.6, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 ? ? 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.details 'fixed-height exit beam, toroidal focusing mirror' _diffrn_detector.pdbx_collection_date 2004-11-10 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double-crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.979735 1.0 2 0.979562 1.0 3 0.956885 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_wavelength_list 0.979735,0.979562,0.956885 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_wavelength ? # _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.060 _reflns.d_resolution_low 28.54 _reflns.number_obs 23148 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 13.6 _reflns.B_iso_Wilson_estimate 43.37 _reflns.pdbx_redundancy 6.8 _reflns.pdbx_Rsym_value 0.101 _reflns.entry_id 1VR3 _reflns.number_all ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.06 _reflns_shell.d_res_low 2.17 _reflns_shell.percent_possible_all 100.0 _reflns_shell.pdbx_Rsym_value 0.864 _reflns_shell.pdbx_redundancy 5.4 _reflns_shell.number_unique_all 3314 _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 2.06 _refine.ls_d_res_low 28.53 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_obs 21908 _refine.ls_number_reflns_R_free 1183 _refine.ls_percent_reflns_R_free 5.1 _refine.ls_percent_reflns_obs 99.94 _refine.ls_R_factor_obs 0.16387 _refine.ls_R_factor_R_work 0.16229 _refine.ls_R_factor_R_free 0.19532 _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.B_iso_mean 37.722 _refine.aniso_B[1][1] -0.48 _refine.aniso_B[2][2] -0.48 _refine.aniso_B[3][3] 0.96 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 2. THE IDENTITY OF THE METAL BOUND IS UNKNOWN. IT WAS TENTATIVELY ASSIGNED AS A NICKLE. BASED ON INFORMATION OF HOMOLOGOUS PROTEINS, IT COULD BE NI2+ OR FE2+. HOWEVER, IT COULD BE ALSO OTHER METALS. 3. SUSPICIOUS DENSITIES: NEAR THR11, IT WAS MODELLED AS A WATER WAT136; ANOTHER DENSITY IN THE ACTIVE SITE WAS MODELLED AS UNKNOWN LIGAND, UNL. THE UNL INTERACTS WITH THE UNKNOWN METAL. ; _refine.pdbx_overall_ESU_R 0.115 _refine.pdbx_overall_ESU_R_Free 0.115 _refine.overall_SU_ML 0.081 _refine.overall_SU_B 5.439 _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.entry_id 1VR3 _refine.ls_R_factor_all ? _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1484 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 169 _refine_hist.number_atoms_total 1667 _refine_hist.d_res_high 2.06 _refine_hist.d_res_low 28.53 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1583 0.018 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1421 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2143 1.436 1.949 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3295 0.799 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 178 6.425 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 88 35.216 23.182 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 284 13.935 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16 11.433 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 221 0.083 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1729 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 346 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 293 0.214 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1423 0.196 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 919 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 140 0.202 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 6 0.107 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 24 0.250 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.153 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 940 2.887 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 357 0.600 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1479 3.504 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 761 6.033 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 664 8.382 11.000 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 758 0.188 0.200 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.060 _refine_ls_shell.d_res_low 2.114 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.number_reflns_R_work 1585 _refine_ls_shell.R_factor_R_work 0.243 _refine_ls_shell.percent_reflns_R_free 5.43 _refine_ls_shell.number_reflns_R_free 91 _refine_ls_shell.R_factor_R_free 0.291 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1VR3 _struct.title 'Crystal structure of Acireductone dioxygenase (13543033) from Mus musculus at 2.06 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;13543033, ACIREDUCTONE DIOXYGENASE, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, OXIDOREDUCTASE ; _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.entry_id 1VR3 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 39 ? LEU A 46 ? SER A 27 LEU A 34 1 ? 8 HELX_P HELX_P2 2 ASP A 54 ? TYR A 58 ? ASP A 42 TYR A 46 5 ? 5 HELX_P HELX_P3 3 ASP A 61 ? ASN A 72 ? ASP A 49 ASN A 60 1 ? 12 HELX_P HELX_P4 4 ASN A 88 ? GLU A 98 ? ASN A 76 GLU A 86 1 ? 11 HELX_P HELX_P5 5 PHE A 177 ? THR A 190 ? PHE A 165 THR A 178 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 13 C ? ? ? 1_555 A VAL 14 N ? ? A MSE 1 A VAL 2 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale2 covale both ? A TYR 18 C ? ? ? 1_555 A MSE 19 N ? ? A TYR 6 A MSE 7 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale3 covale both ? A MSE 19 C ? ? ? 1_555 A ASP 20 N ? ? A MSE 7 A ASP 8 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale4 covale both ? A LYS 69 C ? ? ? 1_555 A MSE 70 N ? ? A LYS 57 A MSE 58 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale5 covale both ? A MSE 70 C ? ? ? 1_555 A ARG 71 N ? ? A MSE 58 A ARG 59 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale6 covale both ? A TRP 75 C ? ? ? 1_555 A MSE 76 N ? ? A TRP 63 A MSE 64 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale7 covale both ? A MSE 76 C ? ? ? 1_555 A ASP 77 N ? ? A MSE 64 A ASP 65 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale8 covale both ? A LYS 94 C ? ? ? 1_555 A MSE 95 N ? ? A LYS 82 A MSE 83 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale9 covale both ? A MSE 95 C ? ? ? 1_555 A PHE 96 N ? ? A MSE 83 A PHE 84 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale10 covale both ? A SER 130 C ? ? ? 1_555 A MSE 131 N ? ? A SER 118 A MSE 119 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale11 covale both ? A MSE 131 C ? ? ? 1_555 A GLU 132 N ? ? A MSE 119 A GLU 120 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale12 covale both ? A ASP 135 C ? ? ? 1_555 A MSE 136 N ? ? A ASP 123 A MSE 124 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale13 covale both ? A MSE 136 C ? ? ? 1_555 A ILE 137 N ? ? A MSE 124 A ILE 125 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale14 covale both ? A ALA 157 C ? ? ? 1_555 A MSE 158 N ? ? A ALA 145 A MSE 146 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale15 covale both ? A MSE 158 C ? ? ? 1_555 A ARG 159 N ? ? A MSE 146 A ARG 147 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale16 covale both ? A TYR 183 C ? ? ? 1_555 A MSE 184 N ? ? A TYR 171 A MSE 172 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale17 covale both ? A MSE 184 C ? ? ? 1_555 A SER 185 N ? ? A MSE 172 A SER 173 1_555 ? ? ? ? ? ? ? 1.318 ? ? metalc1 metalc ? ? A HIS 100 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 88 A NI 200 1_555 ? ? ? ? ? ? ? 2.193 ? ? metalc2 metalc ? ? A HIS 102 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 90 A NI 200 1_555 ? ? ? ? ? ? ? 2.051 ? ? metalc3 metalc ? ? A GLU 106 OE1 ? ? ? 1_555 B NI . NI ? ? A GLU 94 A NI 200 1_555 ? ? ? ? ? ? ? 2.237 ? ? metalc4 metalc ? ? A HIS 145 NE2 ? ? ? 1_555 B NI . NI ? ? A HIS 133 A NI 200 1_555 ? ? ? ? ? ? ? 2.025 ? ? metalc5 metalc ? ? B NI . NI ? ? ? 1_555 C UNL . O1 ? ? A NI 200 A UNL 201 1_555 ? ? ? ? ? ? ? 2.248 ? ? metalc6 metalc ? ? B NI . NI ? ? ? 1_555 C UNL . O6 ? ? A NI 200 A UNL 201 1_555 ? ? ? ? ? ? ? 2.172 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLN 33 A . ? GLN 21 A PRO 34 A ? PRO 22 A 1 4.80 2 ARG 172 A . ? ARG 160 A PRO 173 A ? PRO 161 A 1 0.02 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 15 ? TYR A 18 ? GLN A 3 TYR A 6 A 2 TRP A 126 ? GLU A 132 ? TRP A 114 GLU A 120 A 3 GLU A 106 ? ARG A 120 ? GLU A 94 ARG A 108 A 4 VAL A 155 ? PHE A 161 ? VAL A 143 PHE A 149 A 5 TRP A 75 ? ILE A 81 ? TRP A 63 ILE A 69 B 1 LEU A 49 ? LYS A 52 ? LEU A 37 LYS A 40 B 2 ASP A 135 ? LEU A 139 ? ASP A 123 LEU A 127 B 3 GLU A 106 ? ARG A 120 ? GLU A 94 ARG A 108 B 4 HIS A 145 ? LEU A 149 ? HIS A 133 LEU A 137 C 1 HIS A 100 ? LEU A 101 ? HIS A 88 LEU A 89 C 2 TYR A 170 ? ASN A 171 ? TYR A 158 ASN A 159 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP A 17 ? N TRP A 5 O ARG A 128 ? O ARG A 116 A 2 3 O ILE A 127 ? O ILE A 115 N VAL A 119 ? N VAL A 107 A 3 4 N TYR A 109 ? N TYR A 97 O MSE A 158 ? O MSE A 146 A 4 5 O VAL A 155 ? O VAL A 143 N ILE A 81 ? N ILE A 69 B 1 2 N TRP A 51 ? N TRP A 39 O MSE A 136 ? O MSE A 124 B 2 3 O ILE A 137 ? O ILE A 125 N ARG A 108 ? N ARG A 96 B 3 4 N TYR A 116 ? N TYR A 104 O THR A 148 ? O THR A 136 C 1 2 N LEU A 101 ? N LEU A 89 O TYR A 170 ? O TYR A 158 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NI 200 ? 5 'BINDING SITE FOR RESIDUE NI A 200' AC2 Software A UNL 201 ? 10 'BINDING SITE FOR RESIDUE UNL A 201' AC3 Software A IPA 202 ? 4 'BINDING SITE FOR RESIDUE IPA A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS A 100 ? HIS A 88 . ? 1_555 ? 2 AC1 5 HIS A 102 ? HIS A 90 . ? 1_555 ? 3 AC1 5 GLU A 106 ? GLU A 94 . ? 1_555 ? 4 AC1 5 HIS A 145 ? HIS A 133 . ? 1_555 ? 5 AC1 5 UNL C . ? UNL A 201 . ? 1_555 ? 6 AC2 10 PHE A 96 ? PHE A 84 . ? 1_555 ? 7 AC2 10 HIS A 100 ? HIS A 88 . ? 1_555 ? 8 AC2 10 HIS A 102 ? HIS A 90 . ? 1_555 ? 9 AC2 10 GLU A 106 ? GLU A 94 . ? 1_555 ? 10 AC2 10 ARG A 108 ? ARG A 96 . ? 1_555 ? 11 AC2 10 HIS A 145 ? HIS A 133 . ? 1_555 ? 12 AC2 10 ARG A 159 ? ARG A 147 . ? 1_555 ? 13 AC2 10 NI B . ? NI A 200 . ? 1_555 ? 14 AC2 10 HOH E . ? HOH A 235 . ? 1_555 ? 15 AC2 10 HOH E . ? HOH A 365 . ? 1_555 ? 16 AC3 4 LYS A 69 ? LYS A 57 . ? 1_555 ? 17 AC3 4 ASN A 72 ? ASN A 60 . ? 1_555 ? 18 AC3 4 ARG A 120 ? ARG A 108 . ? 4_554 ? 19 AC3 4 HOH E . ? HOH A 317 . ? 1_555 ? # _atom_sites.entry_id 1VR3 _atom_sites.fract_transf_matrix[1][1] 0.012636 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012636 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008762 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NI O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 ? ? ? A . n A 1 10 HIS 10 -2 ? ? ? A . n A 1 11 HIS 11 -1 ? ? ? A . n A 1 12 HIS 12 0 ? ? ? A . n A 1 13 MSE 13 1 1 MSE MSE A . n A 1 14 VAL 14 2 2 VAL VAL A . n A 1 15 GLN 15 3 3 GLN GLN A . n A 1 16 ALA 16 4 4 ALA ALA A . n A 1 17 TRP 17 5 5 TRP TRP A . n A 1 18 TYR 18 6 6 TYR TYR A . n A 1 19 MSE 19 7 7 MSE MSE A . n A 1 20 ASP 20 8 8 ASP ASP A . n A 1 21 GLU 21 9 9 GLU GLU A . n A 1 22 SER 22 10 10 SER SER A . n A 1 23 THR 23 11 11 THR THR A . n A 1 24 ALA 24 12 12 ALA ALA A . n A 1 25 ASP 25 13 13 ASP ASP A . n A 1 26 PRO 26 14 14 PRO PRO A . n A 1 27 ARG 27 15 15 ARG ARG A . n A 1 28 LYS 28 16 16 LYS LYS A . n A 1 29 PRO 29 17 17 PRO PRO A . n A 1 30 HIS 30 18 18 HIS HIS A . n A 1 31 ARG 31 19 19 ARG ARG A . n A 1 32 ALA 32 20 20 ALA ALA A . n A 1 33 GLN 33 21 21 GLN GLN A . n A 1 34 PRO 34 22 22 PRO PRO A . n A 1 35 ASP 35 23 23 ASP ASP A . n A 1 36 ARG 36 24 24 ARG ARG A . n A 1 37 PRO 37 25 25 PRO PRO A . n A 1 38 VAL 38 26 26 VAL VAL A . n A 1 39 SER 39 27 27 SER SER A . n A 1 40 LEU 40 28 28 LEU LEU A . n A 1 41 GLU 41 29 29 GLU GLU A . n A 1 42 GLN 42 30 30 GLN GLN A . n A 1 43 LEU 43 31 31 LEU LEU A . n A 1 44 ARG 44 32 32 ARG ARG A . n A 1 45 THR 45 33 33 THR THR A . n A 1 46 LEU 46 34 34 LEU LEU A . n A 1 47 GLY 47 35 35 GLY GLY A . n A 1 48 VAL 48 36 36 VAL VAL A . n A 1 49 LEU 49 37 37 LEU LEU A . n A 1 50 TYR 50 38 38 TYR TYR A . n A 1 51 TRP 51 39 39 TRP TRP A . n A 1 52 LYS 52 40 40 LYS LYS A . n A 1 53 LEU 53 41 41 LEU LEU A . n A 1 54 ASP 54 42 42 ASP ASP A . n A 1 55 ALA 55 43 43 ALA ALA A . n A 1 56 ASP 56 44 44 ASP ASP A . n A 1 57 LYS 57 45 45 LYS LYS A . n A 1 58 TYR 58 46 46 TYR TYR A . n A 1 59 GLU 59 47 47 GLU GLU A . n A 1 60 ASN 60 48 48 ASN ASN A . n A 1 61 ASP 61 49 49 ASP ASP A . n A 1 62 PRO 62 50 50 PRO PRO A . n A 1 63 GLU 63 51 51 GLU GLU A . n A 1 64 LEU 64 52 52 LEU LEU A . n A 1 65 GLU 65 53 53 GLU GLU A . n A 1 66 LYS 66 54 54 LYS LYS A . n A 1 67 ILE 67 55 55 ILE ILE A . n A 1 68 ARG 68 56 56 ARG ARG A . n A 1 69 LYS 69 57 57 LYS LYS A . n A 1 70 MSE 70 58 58 MSE MSE A . n A 1 71 ARG 71 59 59 ARG ARG A . n A 1 72 ASN 72 60 60 ASN ASN A . n A 1 73 TYR 73 61 61 TYR TYR A . n A 1 74 SER 74 62 62 SER SER A . n A 1 75 TRP 75 63 63 TRP TRP A . n A 1 76 MSE 76 64 64 MSE MSE A . n A 1 77 ASP 77 65 65 ASP ASP A . n A 1 78 ILE 78 66 66 ILE ILE A . n A 1 79 ILE 79 67 67 ILE ILE A . n A 1 80 THR 80 68 68 THR THR A . n A 1 81 ILE 81 69 69 ILE ILE A . n A 1 82 CYS 82 70 70 CYS CYS A . n A 1 83 LYS 83 71 71 LYS LYS A . n A 1 84 ASP 84 72 72 ASP ASP A . n A 1 85 THR 85 73 73 THR THR A . n A 1 86 LEU 86 74 74 LEU LEU A . n A 1 87 PRO 87 75 75 PRO PRO A . n A 1 88 ASN 88 76 76 ASN ASN A . n A 1 89 TYR 89 77 77 TYR TYR A . n A 1 90 GLU 90 78 78 GLU GLU A . n A 1 91 GLU 91 79 79 GLU GLU A . n A 1 92 LYS 92 80 80 LYS LYS A . n A 1 93 ILE 93 81 81 ILE ILE A . n A 1 94 LYS 94 82 82 LYS LYS A . n A 1 95 MSE 95 83 83 MSE MSE A . n A 1 96 PHE 96 84 84 PHE PHE A . n A 1 97 PHE 97 85 85 PHE PHE A . n A 1 98 GLU 98 86 86 GLU GLU A . n A 1 99 GLU 99 87 87 GLU GLU A . n A 1 100 HIS 100 88 88 HIS HIS A . n A 1 101 LEU 101 89 89 LEU LEU A . n A 1 102 HIS 102 90 90 HIS HIS A . n A 1 103 LEU 103 91 91 LEU LEU A . n A 1 104 ASP 104 92 92 ASP ASP A . n A 1 105 GLU 105 93 93 GLU GLU A . n A 1 106 GLU 106 94 94 GLU GLU A . n A 1 107 ILE 107 95 95 ILE ILE A . n A 1 108 ARG 108 96 96 ARG ARG A . n A 1 109 TYR 109 97 97 TYR TYR A . n A 1 110 ILE 110 98 98 ILE ILE A . n A 1 111 LEU 111 99 99 LEU LEU A . n A 1 112 GLU 112 100 100 GLU GLU A . n A 1 113 GLY 113 101 101 GLY GLY A . n A 1 114 SER 114 102 102 SER SER A . n A 1 115 GLY 115 103 103 GLY GLY A . n A 1 116 TYR 116 104 104 TYR TYR A . n A 1 117 PHE 117 105 105 PHE PHE A . n A 1 118 ASP 118 106 106 ASP ASP A . n A 1 119 VAL 119 107 107 VAL VAL A . n A 1 120 ARG 120 108 108 ARG ARG A . n A 1 121 ASP 121 109 109 ASP ASP A . n A 1 122 LYS 122 110 110 LYS LYS A . n A 1 123 GLU 123 111 111 GLU GLU A . n A 1 124 ASP 124 112 112 ASP ASP A . n A 1 125 LYS 125 113 113 LYS LYS A . n A 1 126 TRP 126 114 114 TRP TRP A . n A 1 127 ILE 127 115 115 ILE ILE A . n A 1 128 ARG 128 116 116 ARG ARG A . n A 1 129 ILE 129 117 117 ILE ILE A . n A 1 130 SER 130 118 118 SER SER A . n A 1 131 MSE 131 119 119 MSE MSE A . n A 1 132 GLU 132 120 120 GLU GLU A . n A 1 133 LYS 133 121 121 LYS LYS A . n A 1 134 GLY 134 122 122 GLY GLY A . n A 1 135 ASP 135 123 123 ASP ASP A . n A 1 136 MSE 136 124 124 MSE MSE A . n A 1 137 ILE 137 125 125 ILE ILE A . n A 1 138 THR 138 126 126 THR THR A . n A 1 139 LEU 139 127 127 LEU LEU A . n A 1 140 PRO 140 128 128 PRO PRO A . n A 1 141 ALA 141 129 129 ALA ALA A . n A 1 142 GLY 142 130 130 GLY GLY A . n A 1 143 ILE 143 131 131 ILE ILE A . n A 1 144 TYR 144 132 132 TYR TYR A . n A 1 145 HIS 145 133 133 HIS HIS A . n A 1 146 ARG 146 134 134 ARG ARG A . n A 1 147 PHE 147 135 135 PHE PHE A . n A 1 148 THR 148 136 136 THR THR A . n A 1 149 LEU 149 137 137 LEU LEU A . n A 1 150 ASP 150 138 138 ASP ASP A . n A 1 151 GLU 151 139 139 GLU GLU A . n A 1 152 LYS 152 140 140 LYS LYS A . n A 1 153 ASN 153 141 141 ASN ASN A . n A 1 154 TYR 154 142 142 TYR TYR A . n A 1 155 VAL 155 143 143 VAL VAL A . n A 1 156 LYS 156 144 144 LYS LYS A . n A 1 157 ALA 157 145 145 ALA ALA A . n A 1 158 MSE 158 146 146 MSE MSE A . n A 1 159 ARG 159 147 147 ARG ARG A . n A 1 160 LEU 160 148 148 LEU LEU A . n A 1 161 PHE 161 149 149 PHE PHE A . n A 1 162 VAL 162 150 150 VAL VAL A . n A 1 163 GLY 163 151 151 GLY GLY A . n A 1 164 GLU 164 152 152 GLU GLU A . n A 1 165 PRO 165 153 153 PRO PRO A . n A 1 166 VAL 166 154 154 VAL VAL A . n A 1 167 TRP 167 155 155 TRP TRP A . n A 1 168 THR 168 156 156 THR THR A . n A 1 169 PRO 169 157 157 PRO PRO A . n A 1 170 TYR 170 158 158 TYR TYR A . n A 1 171 ASN 171 159 159 ASN ASN A . n A 1 172 ARG 172 160 160 ARG ARG A . n A 1 173 PRO 173 161 161 PRO PRO A . n A 1 174 ALA 174 162 162 ALA ALA A . n A 1 175 ASP 175 163 163 ASP ASP A . n A 1 176 HIS 176 164 164 HIS HIS A . n A 1 177 PHE 177 165 165 PHE PHE A . n A 1 178 ASP 178 166 166 ASP ASP A . n A 1 179 ALA 179 167 167 ALA ALA A . n A 1 180 ARG 180 168 168 ARG ARG A . n A 1 181 VAL 181 169 169 VAL VAL A . n A 1 182 GLN 182 170 170 GLN GLN A . n A 1 183 TYR 183 171 171 TYR TYR A . n A 1 184 MSE 184 172 172 MSE MSE A . n A 1 185 SER 185 173 173 SER SER A . n A 1 186 PHE 186 174 174 PHE PHE A . n A 1 187 LEU 187 175 175 LEU LEU A . n A 1 188 GLU 188 176 176 GLU GLU A . n A 1 189 GLY 189 177 177 GLY GLY A . n A 1 190 THR 190 178 178 THR THR A . n A 1 191 ALA 191 179 179 ALA ALA A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI 1 200 200 NI NI A . C 3 UNL 1 201 1 UNL UNL A . D 4 IPA 1 202 2 IPA IPA A . E 5 HOH 1 203 3 HOH HOH A . E 5 HOH 2 204 4 HOH HOH A . E 5 HOH 3 205 5 HOH HOH A . E 5 HOH 4 206 6 HOH HOH A . E 5 HOH 5 207 7 HOH HOH A . E 5 HOH 6 208 8 HOH HOH A . E 5 HOH 7 209 9 HOH HOH A . E 5 HOH 8 210 10 HOH HOH A . E 5 HOH 9 211 11 HOH HOH A . E 5 HOH 10 212 12 HOH HOH A . E 5 HOH 11 213 13 HOH HOH A . E 5 HOH 12 214 14 HOH HOH A . E 5 HOH 13 215 15 HOH HOH A . E 5 HOH 14 216 16 HOH HOH A . E 5 HOH 15 217 17 HOH HOH A . E 5 HOH 16 218 18 HOH HOH A . E 5 HOH 17 219 19 HOH HOH A . E 5 HOH 18 220 20 HOH HOH A . E 5 HOH 19 221 21 HOH HOH A . E 5 HOH 20 222 22 HOH HOH A . E 5 HOH 21 223 23 HOH HOH A . E 5 HOH 22 224 24 HOH HOH A . E 5 HOH 23 225 25 HOH HOH A . E 5 HOH 24 226 26 HOH HOH A . E 5 HOH 25 227 27 HOH HOH A . E 5 HOH 26 228 28 HOH HOH A . E 5 HOH 27 229 29 HOH HOH A . E 5 HOH 28 230 30 HOH HOH A . E 5 HOH 29 231 31 HOH HOH A . E 5 HOH 30 232 32 HOH HOH A . E 5 HOH 31 233 33 HOH HOH A . E 5 HOH 32 234 34 HOH HOH A . E 5 HOH 33 235 35 HOH HOH A . E 5 HOH 34 236 36 HOH HOH A . E 5 HOH 35 237 37 HOH HOH A . E 5 HOH 36 238 38 HOH HOH A . E 5 HOH 37 239 39 HOH HOH A . E 5 HOH 38 240 40 HOH HOH A . E 5 HOH 39 241 41 HOH HOH A . E 5 HOH 40 242 42 HOH HOH A . E 5 HOH 41 243 43 HOH HOH A . E 5 HOH 42 244 44 HOH HOH A . E 5 HOH 43 245 45 HOH HOH A . E 5 HOH 44 246 46 HOH HOH A . E 5 HOH 45 247 47 HOH HOH A . E 5 HOH 46 248 48 HOH HOH A . E 5 HOH 47 249 49 HOH HOH A . E 5 HOH 48 250 50 HOH HOH A . E 5 HOH 49 251 51 HOH HOH A . E 5 HOH 50 252 52 HOH HOH A . E 5 HOH 51 253 53 HOH HOH A . E 5 HOH 52 254 54 HOH HOH A . E 5 HOH 53 255 55 HOH HOH A . E 5 HOH 54 256 56 HOH HOH A . E 5 HOH 55 257 57 HOH HOH A . E 5 HOH 56 258 58 HOH HOH A . E 5 HOH 57 259 59 HOH HOH A . E 5 HOH 58 260 60 HOH HOH A . E 5 HOH 59 261 61 HOH HOH A . E 5 HOH 60 262 62 HOH HOH A . E 5 HOH 61 263 63 HOH HOH A . E 5 HOH 62 264 64 HOH HOH A . E 5 HOH 63 265 65 HOH HOH A . E 5 HOH 64 266 66 HOH HOH A . E 5 HOH 65 267 67 HOH HOH A . E 5 HOH 66 268 68 HOH HOH A . E 5 HOH 67 269 69 HOH HOH A . E 5 HOH 68 270 70 HOH HOH A . E 5 HOH 69 271 71 HOH HOH A . E 5 HOH 70 272 72 HOH HOH A . E 5 HOH 71 273 73 HOH HOH A . E 5 HOH 72 274 74 HOH HOH A . E 5 HOH 73 275 75 HOH HOH A . E 5 HOH 74 276 76 HOH HOH A . E 5 HOH 75 277 77 HOH HOH A . E 5 HOH 76 278 78 HOH HOH A . E 5 HOH 77 279 79 HOH HOH A . E 5 HOH 78 280 80 HOH HOH A . E 5 HOH 79 281 81 HOH HOH A . E 5 HOH 80 282 82 HOH HOH A . E 5 HOH 81 283 83 HOH HOH A . E 5 HOH 82 284 84 HOH HOH A . E 5 HOH 83 285 85 HOH HOH A . E 5 HOH 84 286 86 HOH HOH A . E 5 HOH 85 287 87 HOH HOH A . E 5 HOH 86 288 88 HOH HOH A . E 5 HOH 87 289 89 HOH HOH A . E 5 HOH 88 290 90 HOH HOH A . E 5 HOH 89 291 91 HOH HOH A . E 5 HOH 90 292 92 HOH HOH A . E 5 HOH 91 293 93 HOH HOH A . E 5 HOH 92 294 94 HOH HOH A . E 5 HOH 93 295 95 HOH HOH A . E 5 HOH 94 296 96 HOH HOH A . E 5 HOH 95 297 97 HOH HOH A . E 5 HOH 96 298 98 HOH HOH A . E 5 HOH 97 299 99 HOH HOH A . E 5 HOH 98 300 100 HOH HOH A . E 5 HOH 99 301 101 HOH HOH A . E 5 HOH 100 302 102 HOH HOH A . E 5 HOH 101 303 103 HOH HOH A . E 5 HOH 102 304 104 HOH HOH A . E 5 HOH 103 305 105 HOH HOH A . E 5 HOH 104 306 106 HOH HOH A . E 5 HOH 105 307 107 HOH HOH A . E 5 HOH 106 308 108 HOH HOH A . E 5 HOH 107 309 109 HOH HOH A . E 5 HOH 108 310 110 HOH HOH A . E 5 HOH 109 311 111 HOH HOH A . E 5 HOH 110 312 112 HOH HOH A . E 5 HOH 111 313 113 HOH HOH A . E 5 HOH 112 314 114 HOH HOH A . E 5 HOH 113 315 115 HOH HOH A . E 5 HOH 114 316 116 HOH HOH A . E 5 HOH 115 317 117 HOH HOH A . E 5 HOH 116 318 118 HOH HOH A . E 5 HOH 117 319 119 HOH HOH A . E 5 HOH 118 320 120 HOH HOH A . E 5 HOH 119 321 121 HOH HOH A . E 5 HOH 120 322 122 HOH HOH A . E 5 HOH 121 323 123 HOH HOH A . E 5 HOH 122 324 124 HOH HOH A . E 5 HOH 123 325 125 HOH HOH A . E 5 HOH 124 326 126 HOH HOH A . E 5 HOH 125 327 127 HOH HOH A . E 5 HOH 126 328 128 HOH HOH A . E 5 HOH 127 329 129 HOH HOH A . E 5 HOH 128 330 130 HOH HOH A . E 5 HOH 129 331 131 HOH HOH A . E 5 HOH 130 332 132 HOH HOH A . E 5 HOH 131 333 133 HOH HOH A . E 5 HOH 132 334 134 HOH HOH A . E 5 HOH 133 335 135 HOH HOH A . E 5 HOH 134 336 136 HOH HOH A . E 5 HOH 135 337 137 HOH HOH A . E 5 HOH 136 338 138 HOH HOH A . E 5 HOH 137 339 139 HOH HOH A . E 5 HOH 138 340 140 HOH HOH A . E 5 HOH 139 341 141 HOH HOH A . E 5 HOH 140 342 142 HOH HOH A . E 5 HOH 141 343 143 HOH HOH A . E 5 HOH 142 344 144 HOH HOH A . E 5 HOH 143 345 145 HOH HOH A . E 5 HOH 144 346 146 HOH HOH A . E 5 HOH 145 347 147 HOH HOH A . E 5 HOH 146 348 148 HOH HOH A . E 5 HOH 147 349 149 HOH HOH A . E 5 HOH 148 350 150 HOH HOH A . E 5 HOH 149 351 151 HOH HOH A . E 5 HOH 150 352 152 HOH HOH A . E 5 HOH 151 353 153 HOH HOH A . E 5 HOH 152 354 154 HOH HOH A . E 5 HOH 153 355 155 HOH HOH A . E 5 HOH 154 356 156 HOH HOH A . E 5 HOH 155 357 157 HOH HOH A . E 5 HOH 156 358 158 HOH HOH A . E 5 HOH 157 359 159 HOH HOH A . E 5 HOH 158 360 160 HOH HOH A . E 5 HOH 159 361 161 HOH HOH A . E 5 HOH 160 362 162 HOH HOH A . E 5 HOH 161 363 163 HOH HOH A . E 5 HOH 162 364 164 HOH HOH A . E 5 HOH 163 365 165 HOH HOH A . E 5 HOH 164 366 166 HOH HOH A . E 5 HOH 165 367 167 HOH HOH A . E 5 HOH 166 368 168 HOH HOH A . E 5 HOH 167 369 169 HOH HOH A . E 5 HOH 168 370 170 HOH HOH A . E 5 HOH 169 371 171 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 19 A MSE 7 ? MET SELENOMETHIONINE 3 A MSE 70 A MSE 58 ? MET SELENOMETHIONINE 4 A MSE 76 A MSE 64 ? MET SELENOMETHIONINE 5 A MSE 95 A MSE 83 ? MET SELENOMETHIONINE 6 A MSE 131 A MSE 119 ? MET SELENOMETHIONINE 7 A MSE 136 A MSE 124 ? MET SELENOMETHIONINE 8 A MSE 158 A MSE 146 ? MET SELENOMETHIONINE 9 A MSE 184 A MSE 172 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 100 ? A HIS 88 ? 1_555 NI ? B NI . ? A NI 200 ? 1_555 NE2 ? A HIS 102 ? A HIS 90 ? 1_555 96.0 ? 2 NE2 ? A HIS 100 ? A HIS 88 ? 1_555 NI ? B NI . ? A NI 200 ? 1_555 OE1 ? A GLU 106 ? A GLU 94 ? 1_555 177.2 ? 3 NE2 ? A HIS 102 ? A HIS 90 ? 1_555 NI ? B NI . ? A NI 200 ? 1_555 OE1 ? A GLU 106 ? A GLU 94 ? 1_555 81.4 ? 4 NE2 ? A HIS 100 ? A HIS 88 ? 1_555 NI ? B NI . ? A NI 200 ? 1_555 NE2 ? A HIS 145 ? A HIS 133 ? 1_555 90.2 ? 5 NE2 ? A HIS 102 ? A HIS 90 ? 1_555 NI ? B NI . ? A NI 200 ? 1_555 NE2 ? A HIS 145 ? A HIS 133 ? 1_555 107.7 ? 6 OE1 ? A GLU 106 ? A GLU 94 ? 1_555 NI ? B NI . ? A NI 200 ? 1_555 NE2 ? A HIS 145 ? A HIS 133 ? 1_555 91.6 ? 7 NE2 ? A HIS 100 ? A HIS 88 ? 1_555 NI ? B NI . ? A NI 200 ? 1_555 O1 ? C UNL . ? A UNL 201 ? 1_555 93.1 ? 8 NE2 ? A HIS 102 ? A HIS 90 ? 1_555 NI ? B NI . ? A NI 200 ? 1_555 O1 ? C UNL . ? A UNL 201 ? 1_555 86.2 ? 9 OE1 ? A GLU 106 ? A GLU 94 ? 1_555 NI ? B NI . ? A NI 200 ? 1_555 O1 ? C UNL . ? A UNL 201 ? 1_555 85.7 ? 10 NE2 ? A HIS 145 ? A HIS 133 ? 1_555 NI ? B NI . ? A NI 200 ? 1_555 O1 ? C UNL . ? A UNL 201 ? 1_555 165.4 ? 11 NE2 ? A HIS 100 ? A HIS 88 ? 1_555 NI ? B NI . ? A NI 200 ? 1_555 O6 ? C UNL . ? A UNL 201 ? 1_555 95.3 ? 12 NE2 ? A HIS 102 ? A HIS 90 ? 1_555 NI ? B NI . ? A NI 200 ? 1_555 O6 ? C UNL . ? A UNL 201 ? 1_555 156.3 ? 13 OE1 ? A GLU 106 ? A GLU 94 ? 1_555 NI ? B NI . ? A NI 200 ? 1_555 O6 ? C UNL . ? A UNL 201 ? 1_555 86.7 ? 14 NE2 ? A HIS 145 ? A HIS 133 ? 1_555 NI ? B NI . ? A NI 200 ? 1_555 O6 ? C UNL . ? A UNL 201 ? 1_555 93.0 ? 15 O1 ? C UNL . ? A UNL 201 ? 1_555 NI ? B NI . ? A NI 200 ? 1_555 O6 ? C UNL . ? A UNL 201 ? 1_555 72.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-02-15 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 4 'Structure model' '_struct_ref_seq_dif.details' 31 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 32 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 33 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details . _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 45.8160 _pdbx_refine_tls.origin_y 14.8274 _pdbx_refine_tls.origin_z 49.5691 _pdbx_refine_tls.T[1][1] -0.1005 _pdbx_refine_tls.T[2][2] -0.0814 _pdbx_refine_tls.T[3][3] -0.0741 _pdbx_refine_tls.T[1][2] 0.0133 _pdbx_refine_tls.T[1][3] 0.0167 _pdbx_refine_tls.T[2][3] -0.0269 _pdbx_refine_tls.L[1][1] 2.4355 _pdbx_refine_tls.L[2][2] 0.8176 _pdbx_refine_tls.L[3][3] 1.8039 _pdbx_refine_tls.L[1][2] -0.1448 _pdbx_refine_tls.L[1][3] -1.1836 _pdbx_refine_tls.L[2][3] 0.2589 _pdbx_refine_tls.S[1][1] 0.0030 _pdbx_refine_tls.S[2][2] 0.0336 _pdbx_refine_tls.S[3][3] -0.0366 _pdbx_refine_tls.S[1][2] -0.0569 _pdbx_refine_tls.S[1][3] -0.0636 _pdbx_refine_tls.S[2][3] -0.0037 _pdbx_refine_tls.S[2][1] 0.0065 _pdbx_refine_tls.S[3][1] -0.0112 _pdbx_refine_tls.S[3][2] 0.1229 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 13 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 191 _pdbx_refine_tls_group.selection ALL _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 179 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 SCALA 'data scaling' '5.0)' ? 2 autoSHARP phasing . ? 3 REFMAC refinement 5.2.0005 ? 4 XDS 'data reduction' . ? 5 CCP4 'data scaling' '(SCALA)' ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 60 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 A _pdbx_validate_close_contact.auth_atom_id_2 O2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 IPA _pdbx_validate_close_contact.auth_seq_id_2 202 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 13 ? ? 50.35 73.99 2 1 ASN A 48 ? ? -154.04 80.63 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MSE 1 ? CG ? A MSE 13 CG 2 1 Y 1 A MSE 1 ? SE ? A MSE 13 SE 3 1 Y 1 A MSE 1 ? CE ? A MSE 13 CE 4 1 Y 1 A GLN 3 ? OE1 ? A GLN 15 OE1 5 1 Y 1 A GLN 3 ? NE2 ? A GLN 15 NE2 6 1 Y 1 A LYS 16 ? CE ? A LYS 28 CE 7 1 Y 1 A LYS 16 ? NZ ? A LYS 28 NZ 8 1 Y 1 A GLU 29 ? CD ? A GLU 41 CD 9 1 Y 1 A GLU 29 ? OE1 ? A GLU 41 OE1 10 1 Y 1 A GLU 29 ? OE2 ? A GLU 41 OE2 11 1 Y 1 A GLU 53 ? OE1 ? A GLU 65 OE1 12 1 Y 1 A GLU 53 ? OE2 ? A GLU 65 OE2 13 1 Y 1 A ILE 67 ? CD1 ? A ILE 79 CD1 14 1 Y 1 A LYS 71 ? CD ? A LYS 83 CD 15 1 Y 1 A LYS 71 ? CE ? A LYS 83 CE 16 1 Y 1 A LYS 71 ? NZ ? A LYS 83 NZ 17 1 Y 1 A GLU 79 ? CD ? A GLU 91 CD 18 1 Y 1 A GLU 79 ? OE1 ? A GLU 91 OE1 19 1 Y 1 A GLU 79 ? OE2 ? A GLU 91 OE2 20 1 Y 1 A LYS 80 ? CD ? A LYS 92 CD 21 1 Y 1 A LYS 80 ? CE ? A LYS 92 CE 22 1 Y 1 A LYS 80 ? NZ ? A LYS 92 NZ 23 1 Y 1 A LYS 82 ? CD ? A LYS 94 CD 24 1 Y 1 A LYS 82 ? CE ? A LYS 94 CE 25 1 Y 1 A LYS 82 ? NZ ? A LYS 94 NZ 26 1 Y 1 A GLU 111 ? CD ? A GLU 123 CD 27 1 Y 1 A GLU 111 ? OE1 ? A GLU 123 OE1 28 1 Y 1 A GLU 111 ? OE2 ? A GLU 123 OE2 29 1 Y 1 A LYS 113 ? CE ? A LYS 125 CE 30 1 Y 1 A LYS 113 ? NZ ? A LYS 125 NZ 31 1 Y 1 A LYS 140 ? NZ ? A LYS 152 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -11 ? A MSE 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A HIS -3 ? A HIS 9 10 1 Y 1 A HIS -2 ? A HIS 10 11 1 Y 1 A HIS -1 ? A HIS 11 12 1 Y 1 A HIS 0 ? A HIS 12 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 'UNKNOWN LIGAND' UNL 4 'ISOPROPYL ALCOHOL' IPA 5 water HOH #