HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 31-JAN-05 1VR4 TITLE CRYSTAL STRUCTURE OF MCSG TARGET APC22750 FROM BACILLUS CEREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN APC22750; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 226900; SOURCE 4 STRAIN: ATCC 14579; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PENTAMER, HYPOTHETICAL PROTEIN, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, THE MIDWEST CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR X.YANG,J.S.BRUNZELLE,L.K.MCNAMARA,G.MINASOV,L.SHUVALOVA,F.R.COLLART, AUTHOR 2 W.F.ANDERSON,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 27-DEC-23 1VR4 1 REMARK REVDAT 4 04-OCT-17 1VR4 1 REMARK REVDAT 3 13-JUL-11 1VR4 1 VERSN REVDAT 2 24-FEB-09 1VR4 1 VERSN REVDAT 1 08-FEB-05 1VR4 0 SPRSDE 08-FEB-05 1VR4 1YBB JRNL AUTH J.S.BRUNZELLE,L.K.MCNAMARA,X.YANG,G.MINASOV,L.SHUVALOVA, JRNL AUTH 2 F.R.COLLART,W.F.ANDERSON,MCSG JRNL TITL CRYSTAL STRUCTURE OF MCSG TARGET APC22750 FROM BACILLUS JRNL TITL 2 CEREUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.1 REMARK 3 NUMBER OF REFLECTIONS : 22639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2117 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1168 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3575 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 151 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.72000 REMARK 3 B13 (A**2) : -0.41000 REMARK 3 B23 (A**2) : -1.07000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.335 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.255 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.280 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.861 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3586 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4806 ; 1.474 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 468 ; 6.197 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 590 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2522 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1755 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 229 ; 0.212 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.199 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.238 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2320 ; 0.712 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3737 ; 1.343 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1266 ; 2.381 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1069 ; 3.951 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2096 29.9515 -0.8951 REMARK 3 T TENSOR REMARK 3 T11: 0.0929 T22: 0.0579 REMARK 3 T33: 0.0361 T12: 0.0197 REMARK 3 T13: -0.0060 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 3.0573 L22: 4.8667 REMARK 3 L33: 3.0997 L12: 1.0471 REMARK 3 L13: -0.8225 L23: -0.6900 REMARK 3 S TENSOR REMARK 3 S11: -0.0940 S12: 0.0700 S13: -0.2396 REMARK 3 S21: 0.0348 S22: 0.0946 S23: 0.1587 REMARK 3 S31: 0.2085 S32: -0.1787 S33: -0.0007 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 103 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4917 25.4596 11.7104 REMARK 3 T TENSOR REMARK 3 T11: 0.0917 T22: 0.0001 REMARK 3 T33: 0.0501 T12: -0.0019 REMARK 3 T13: -0.0271 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 8.8699 L22: 4.7858 REMARK 3 L33: 4.8199 L12: -1.6000 REMARK 3 L13: -1.9608 L23: 0.3378 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: -0.3411 S13: -0.3116 REMARK 3 S21: 0.3563 S22: -0.0420 S23: 0.0090 REMARK 3 S31: 0.0927 S32: -0.0845 S33: 0.0304 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 103 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2854 39.1401 23.8983 REMARK 3 T TENSOR REMARK 3 T11: 0.1659 T22: 0.0968 REMARK 3 T33: 0.0517 T12: -0.0529 REMARK 3 T13: 0.0183 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 7.2324 L22: 4.4521 REMARK 3 L33: 2.9529 L12: -3.6860 REMARK 3 L13: -1.1863 L23: 0.7916 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: -0.3754 S13: -0.0547 REMARK 3 S21: 0.4663 S22: 0.0672 S23: 0.0779 REMARK 3 S31: 0.1236 S32: -0.1620 S33: -0.0601 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 103 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4119 53.7304 14.1900 REMARK 3 T TENSOR REMARK 3 T11: 0.0825 T22: 0.0258 REMARK 3 T33: 0.0840 T12: 0.0213 REMARK 3 T13: 0.0021 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 7.0662 L22: 2.5389 REMARK 3 L33: 4.2295 L12: -1.0387 REMARK 3 L13: 2.9995 L23: -0.2170 REMARK 3 S TENSOR REMARK 3 S11: -0.1065 S12: 0.0281 S13: 0.2805 REMARK 3 S21: -0.0528 S22: -0.0501 S23: 0.2713 REMARK 3 S31: -0.3623 S32: -0.2279 S33: 0.1566 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 103 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2687 47.1956 -2.1929 REMARK 3 T TENSOR REMARK 3 T11: 0.0757 T22: 0.0752 REMARK 3 T33: 0.0394 T12: 0.0083 REMARK 3 T13: 0.0115 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 2.9032 L22: 4.7216 REMARK 3 L33: 3.1805 L12: 2.7558 REMARK 3 L13: 1.3619 L23: 1.9259 REMARK 3 S TENSOR REMARK 3 S11: -0.1640 S12: 0.1862 S13: 0.0398 REMARK 3 S21: -0.1630 S22: 0.0865 S23: 0.1059 REMARK 3 S31: -0.0734 S32: -0.2055 S33: 0.0776 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VR4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000002076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 99.8 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 32-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DIAMOND 111 REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26115 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, PH 8, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 30 REMARK 465 ILE B 31 REMARK 465 VAL B 32 REMARK 465 ARG B 33 REMARK 465 ASP B 34 REMARK 465 LEU B 35 REMARK 465 PHE B 36 REMARK 465 ALA B 37 REMARK 465 SER B 38 REMARK 465 VAL B 39 REMARK 465 ARG B 40 REMARK 465 ASP B 41 REMARK 465 VAL B 42 REMARK 465 VAL B 43 REMARK 465 GLY B 44 REMARK 465 GLY B 45 REMARK 465 ARG B 46 REMARK 465 ALA B 47 REMARK 465 GLY B 48 REMARK 465 SER B 49 REMARK 465 TYR B 50 REMARK 465 ARG C 40 REMARK 465 ASP C 41 REMARK 465 VAL C 42 REMARK 465 VAL C 43 REMARK 465 ASN E 30 REMARK 465 ILE E 31 REMARK 465 VAL E 32 REMARK 465 ARG E 33 REMARK 465 ASP E 34 REMARK 465 LEU E 35 REMARK 465 PHE E 36 REMARK 465 ALA E 37 REMARK 465 SER E 38 REMARK 465 VAL E 39 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA C 95 C ALA C 95 O -0.173 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 88 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP C 19 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP C 83 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP D 59 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP E 41 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP E 83 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 7 39.48 -95.44 REMARK 500 ASP A 34 30.75 -80.58 REMARK 500 LEU A 35 20.45 -145.01 REMARK 500 PHE A 36 52.80 -90.87 REMARK 500 SER A 38 16.57 -59.12 REMARK 500 VAL A 39 -14.18 -48.92 REMARK 500 ASP A 41 -129.03 65.48 REMARK 500 ARG A 88 111.79 -4.72 REMARK 500 SER B 7 53.81 -109.05 REMARK 500 ARG B 88 -131.62 -110.30 REMARK 500 ILE C 31 -64.72 -93.37 REMARK 500 ARG C 33 -128.33 49.44 REMARK 500 VAL C 87 -135.21 -112.16 REMARK 500 ARG C 88 88.90 -52.55 REMARK 500 ASP C 89 73.92 44.34 REMARK 500 MET C 91 112.87 179.76 REMARK 500 VAL D 32 139.37 -171.67 REMARK 500 ARG D 33 -144.60 55.56 REMARK 500 ASP D 41 41.72 -88.55 REMARK 500 VAL D 43 116.88 -8.75 REMARK 500 ARG D 88 114.92 -19.29 REMARK 500 GLN E 10 107.29 -54.72 REMARK 500 VAL E 87 -81.13 -113.21 REMARK 500 ARG E 88 -159.35 -87.04 REMARK 500 ASP E 89 73.99 -50.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 88 0.17 SIDE CHAIN REMARK 500 ARG D 40 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC22750 RELATED DB: TARGETDB REMARK 900 MCSG DBREF 1VR4 A 1 103 UNP Q81H14 Q81H14_BACCR 1 103 DBREF 1VR4 B 1 103 UNP Q81H14 Q81H14_BACCR 1 103 DBREF 1VR4 C 1 103 UNP Q81H14 Q81H14_BACCR 1 103 DBREF 1VR4 D 1 103 UNP Q81H14 Q81H14_BACCR 1 103 DBREF 1VR4 E 1 103 UNP Q81H14 Q81H14_BACCR 1 103 SEQRES 1 A 103 MET ILE VAL THR THR THR SER GLY ILE GLN GLY LYS GLU SEQRES 2 A 103 ILE ILE GLU TYR ILE ASP ILE VAL ASN GLY GLU ALA ILE SEQRES 3 A 103 MET GLY ALA ASN ILE VAL ARG ASP LEU PHE ALA SER VAL SEQRES 4 A 103 ARG ASP VAL VAL GLY GLY ARG ALA GLY SER TYR GLU SER SEQRES 5 A 103 LYS LEU LYS GLU ALA ARG ASP ILE ALA MET ASP GLU MET SEQRES 6 A 103 LYS GLU LEU ALA LYS GLN LYS GLY ALA ASN ALA ILE VAL SEQRES 7 A 103 GLY VAL ASP VAL ASP TYR GLU VAL VAL ARG ASP GLY MET SEQRES 8 A 103 LEU MET VAL ALA VAL SER GLY THR ALA VAL ARG ILE SEQRES 1 B 103 MET ILE VAL THR THR THR SER GLY ILE GLN GLY LYS GLU SEQRES 2 B 103 ILE ILE GLU TYR ILE ASP ILE VAL ASN GLY GLU ALA ILE SEQRES 3 B 103 MET GLY ALA ASN ILE VAL ARG ASP LEU PHE ALA SER VAL SEQRES 4 B 103 ARG ASP VAL VAL GLY GLY ARG ALA GLY SER TYR GLU SER SEQRES 5 B 103 LYS LEU LYS GLU ALA ARG ASP ILE ALA MET ASP GLU MET SEQRES 6 B 103 LYS GLU LEU ALA LYS GLN LYS GLY ALA ASN ALA ILE VAL SEQRES 7 B 103 GLY VAL ASP VAL ASP TYR GLU VAL VAL ARG ASP GLY MET SEQRES 8 B 103 LEU MET VAL ALA VAL SER GLY THR ALA VAL ARG ILE SEQRES 1 C 103 MET ILE VAL THR THR THR SER GLY ILE GLN GLY LYS GLU SEQRES 2 C 103 ILE ILE GLU TYR ILE ASP ILE VAL ASN GLY GLU ALA ILE SEQRES 3 C 103 MET GLY ALA ASN ILE VAL ARG ASP LEU PHE ALA SER VAL SEQRES 4 C 103 ARG ASP VAL VAL GLY GLY ARG ALA GLY SER TYR GLU SER SEQRES 5 C 103 LYS LEU LYS GLU ALA ARG ASP ILE ALA MET ASP GLU MET SEQRES 6 C 103 LYS GLU LEU ALA LYS GLN LYS GLY ALA ASN ALA ILE VAL SEQRES 7 C 103 GLY VAL ASP VAL ASP TYR GLU VAL VAL ARG ASP GLY MET SEQRES 8 C 103 LEU MET VAL ALA VAL SER GLY THR ALA VAL ARG ILE SEQRES 1 D 103 MET ILE VAL THR THR THR SER GLY ILE GLN GLY LYS GLU SEQRES 2 D 103 ILE ILE GLU TYR ILE ASP ILE VAL ASN GLY GLU ALA ILE SEQRES 3 D 103 MET GLY ALA ASN ILE VAL ARG ASP LEU PHE ALA SER VAL SEQRES 4 D 103 ARG ASP VAL VAL GLY GLY ARG ALA GLY SER TYR GLU SER SEQRES 5 D 103 LYS LEU LYS GLU ALA ARG ASP ILE ALA MET ASP GLU MET SEQRES 6 D 103 LYS GLU LEU ALA LYS GLN LYS GLY ALA ASN ALA ILE VAL SEQRES 7 D 103 GLY VAL ASP VAL ASP TYR GLU VAL VAL ARG ASP GLY MET SEQRES 8 D 103 LEU MET VAL ALA VAL SER GLY THR ALA VAL ARG ILE SEQRES 1 E 103 MET ILE VAL THR THR THR SER GLY ILE GLN GLY LYS GLU SEQRES 2 E 103 ILE ILE GLU TYR ILE ASP ILE VAL ASN GLY GLU ALA ILE SEQRES 3 E 103 MET GLY ALA ASN ILE VAL ARG ASP LEU PHE ALA SER VAL SEQRES 4 E 103 ARG ASP VAL VAL GLY GLY ARG ALA GLY SER TYR GLU SER SEQRES 5 E 103 LYS LEU LYS GLU ALA ARG ASP ILE ALA MET ASP GLU MET SEQRES 6 E 103 LYS GLU LEU ALA LYS GLN LYS GLY ALA ASN ALA ILE VAL SEQRES 7 E 103 GLY VAL ASP VAL ASP TYR GLU VAL VAL ARG ASP GLY MET SEQRES 8 E 103 LEU MET VAL ALA VAL SER GLY THR ALA VAL ARG ILE FORMUL 6 HOH *151(H2 O) HELIX 1 1 GLY A 28 ASP A 34 1 7 HELIX 2 2 LEU A 35 ARG A 40 5 6 HELIX 3 3 LEU A 54 LYS A 72 1 19 HELIX 4 4 ARG A 88 GLY A 90 5 3 HELIX 5 5 GLU B 51 LYS B 72 1 22 HELIX 6 6 SER C 49 LYS C 72 1 24 HELIX 7 7 SER D 49 LYS D 72 1 24 HELIX 8 8 ARG D 88 GLY D 90 5 3 HELIX 9 9 LEU E 54 LYS E 72 1 19 SHEET 1 A 5 ILE A 2 VAL A 3 0 SHEET 2 A 5 ALA A 76 VAL A 87 1 O ILE A 77 N ILE A 2 SHEET 3 A 5 MET A 91 ARG A 102 -1 O THR A 99 N VAL A 78 SHEET 4 A 5 GLU A 16 MET A 27 -1 N ASP A 19 O ALA A 100 SHEET 5 A 5 VAL E 42 GLY E 44 -1 O VAL E 43 N ILE A 26 SHEET 1 B 5 VAL A 42 GLY A 44 0 SHEET 2 B 5 GLU B 16 MET B 27 -1 O ILE B 26 N VAL A 43 SHEET 3 B 5 LEU B 92 ARG B 102 -1 O GLY B 98 N VAL B 21 SHEET 4 B 5 ALA B 76 VAL B 86 -1 N GLU B 85 O MET B 93 SHEET 5 B 5 ILE B 2 VAL B 3 1 N ILE B 2 O ILE B 77 SHEET 1 C 4 ILE C 2 VAL C 3 0 SHEET 2 C 4 ALA C 76 VAL C 86 1 O ILE C 77 N ILE C 2 SHEET 3 C 4 LEU C 92 ARG C 102 -1 O VAL C 101 N ALA C 76 SHEET 4 C 4 GLU C 16 ILE C 26 -1 N GLY C 23 O VAL C 96 SHEET 1 D 2 ASN C 30 VAL C 32 0 SHEET 2 D 2 LEU C 35 PHE C 36 -1 O LEU C 35 N VAL C 32 SHEET 1 E 4 ILE D 2 VAL D 3 0 SHEET 2 E 4 ALA D 76 VAL D 87 1 O ILE D 77 N ILE D 2 SHEET 3 E 4 MET D 91 ARG D 102 -1 O THR D 99 N VAL D 78 SHEET 4 E 4 GLU D 16 ILE D 26 -1 N GLY D 23 O VAL D 96 SHEET 1 F 2 ASN D 30 VAL D 32 0 SHEET 2 F 2 LEU D 35 PHE D 36 -1 O LEU D 35 N ILE D 31 SHEET 1 G 4 ILE E 2 VAL E 3 0 SHEET 2 G 4 ALA E 76 VAL E 86 1 O ILE E 77 N ILE E 2 SHEET 3 G 4 LEU E 92 ARG E 102 -1 O ALA E 95 N ASP E 83 SHEET 4 G 4 GLU E 16 ILE E 26 -1 N GLY E 23 O VAL E 96 CRYST1 51.940 53.560 53.480 65.88 70.37 70.88 P 1 5 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019253 -0.006674 -0.004912 0.00000 SCALE2 0.000000 0.019761 -0.007039 0.00000 SCALE3 0.000000 0.000000 0.021074 0.00000