HEADER UNKNOWN FUNCTION 17-FEB-05 1VR9 TITLE CRYSTAL STRUCTURE OF A CBS DOMAIN PAIR/ACT DOMAIN PROTEIN (TM0892) TITLE 2 FROM THERMOTOGA MARITIMA AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CBS DOMAIN PROTEIN/ACT DOMAIN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM0892; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 1VR9 1 SEQADV LINK REVDAT 5 13-JUL-11 1VR9 1 VERSN REVDAT 4 28-JUL-10 1VR9 1 HEADER TITLE KEYWDS REVDAT 3 24-FEB-09 1VR9 1 VERSN REVDAT 2 29-MAR-05 1VR9 1 REMARK REVDAT 1 15-MAR-05 1VR9 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF CBS DOMAIN PROTEIN/ACT DOMAIN PROTEIN JRNL TITL 2 (TM0892) FROM THERMOTOGA MARITIMA AT 1.70 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 80.4 REMARK 3 NUMBER OF REFLECTIONS : 43645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2336 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2591 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1986 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 242 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : 0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.31000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.434 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2077 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1907 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2798 ; 1.281 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4453 ; 0.882 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 5.824 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;32.955 ;24.386 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 404 ;14.383 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.856 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 311 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2254 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 416 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 467 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2039 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 985 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1121 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 143 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.336 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 68 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.145 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1519 ; 1.120 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 486 ; 0.225 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1981 ; 1.236 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 942 ; 2.311 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 817 ; 3.294 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): -44.7680 -0.2480 -12.9200 REMARK 3 T TENSOR REMARK 3 T11: -0.0308 T22: -0.1773 REMARK 3 T33: -0.1874 T12: -0.0037 REMARK 3 T13: 0.0107 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 3.0152 L22: 1.8768 REMARK 3 L33: 2.3132 L12: -0.6668 REMARK 3 L13: 0.8435 L23: -0.5571 REMARK 3 S TENSOR REMARK 3 S11: -0.0493 S12: 0.0405 S13: 0.0836 REMARK 3 S21: 0.0461 S22: -0.0310 S23: -0.1448 REMARK 3 S31: -0.1625 S32: 0.0028 S33: 0.0804 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): -46.3320 -24.1530 -5.3200 REMARK 3 T TENSOR REMARK 3 T11: -0.0373 T22: -0.1689 REMARK 3 T33: -0.1714 T12: 0.0037 REMARK 3 T13: 0.0376 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 3.9200 L22: 1.8986 REMARK 3 L33: 1.5924 L12: 1.0444 REMARK 3 L13: -0.5086 L23: -0.1202 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: -0.0984 S13: -0.0955 REMARK 3 S21: 0.0481 S22: -0.0468 S23: -0.1350 REMARK 3 S31: 0.1491 S32: 0.0047 S33: 0.0806 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. IT WAS NOT POSSIBLE TO TRACE RESIDUES 122- REMARK 3 201 IN EACH CHAIN. PFAM ANALYSIS OF THE SEQUENCE INDICATES THAT REMARK 3 THIS REGION IS COMPOSED OF AN ACT DOMAIN. MASS SPECTROSCOPY REMARK 3 INDICATES THAT THE PROTEIN IS COMPLETE, SUGGESTING THAT THIS REMARK 3 REGION IS DISORDERED. REMARK 4 REMARK 4 1VR9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000002081. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-05; 06-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS REMARK 200 BEAMLINE : 8.2.1; 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99187; 0.979741, 1.019859 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111); DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC; ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45259 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 37.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.6 REMARK 200 DATA REDUNDANCY : 3.160 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.96 REMARK 200 R MERGE FOR SHELL (I) : 0.27800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD + MOLECULAR REMARK 200 REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA FROM A SE-MET CONTAINING CRYSTAL IN SPACEGROUP I222 REMARK 200 WAS USED FOR THE MAD PHASING EXPERIMENTS AT 2.0 ANGSTROMS REMARK 200 RESOLUTION. THIS MAD STRUCTURE WAS USED AS A MOLECULAR REMARK 200 REPLACEMENT MODEL TO PHASE THE STRUCTURE OF A SECOND CRYSTAL IN REMARK 200 SPACEGROUP C2 THAT WAS REFINED TO A RESOLUTION OF 1.70A. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.0% PEG-8000, 0.1M HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K. 20.0% REMARK 280 PEG-10000, 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 114.02000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.32350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 114.02000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.32350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 122 REMARK 465 ASP A 123 REMARK 465 VAL A 124 REMARK 465 PRO A 125 REMARK 465 GLY A 126 REMARK 465 ILE A 127 REMARK 465 ARG A 128 REMARK 465 PHE A 129 REMARK 465 SER A 130 REMARK 465 VAL A 131 REMARK 465 LEU A 132 REMARK 465 LEU A 133 REMARK 465 GLU A 134 REMARK 465 ASP A 135 REMARK 465 LYS A 136 REMARK 465 PRO A 137 REMARK 465 GLY A 138 REMARK 465 GLU A 139 REMARK 465 LEU A 140 REMARK 465 ARG A 141 REMARK 465 LYS A 142 REMARK 465 VAL A 143 REMARK 465 VAL A 144 REMARK 465 ASP A 145 REMARK 465 ALA A 146 REMARK 465 LEU A 147 REMARK 465 ALA A 148 REMARK 465 LEU A 149 REMARK 465 SER A 150 REMARK 465 ASN A 151 REMARK 465 ILE A 152 REMARK 465 ASN A 153 REMARK 465 ILE A 154 REMARK 465 LEU A 155 REMARK 465 SER A 156 REMARK 465 VAL A 157 REMARK 465 ILE A 158 REMARK 465 THR A 159 REMARK 465 THR A 160 REMARK 465 ARG A 161 REMARK 465 SER A 162 REMARK 465 GLY A 163 REMARK 465 ASP A 164 REMARK 465 GLY A 165 REMARK 465 LYS A 166 REMARK 465 ARG A 167 REMARK 465 GLU A 168 REMARK 465 VAL A 169 REMARK 465 LEU A 170 REMARK 465 ILE A 171 REMARK 465 LYS A 172 REMARK 465 VAL A 173 REMARK 465 ASP A 174 REMARK 465 ALA A 175 REMARK 465 VAL A 176 REMARK 465 ASP A 177 REMARK 465 GLU A 178 REMARK 465 GLY A 179 REMARK 465 THR A 180 REMARK 465 LEU A 181 REMARK 465 ILE A 182 REMARK 465 LYS A 183 REMARK 465 LEU A 184 REMARK 465 PHE A 185 REMARK 465 GLU A 186 REMARK 465 SER A 187 REMARK 465 LEU A 188 REMARK 465 GLY A 189 REMARK 465 ILE A 190 REMARK 465 LYS A 191 REMARK 465 ILE A 192 REMARK 465 GLU A 193 REMARK 465 SER A 194 REMARK 465 ILE A 195 REMARK 465 GLU A 196 REMARK 465 LYS A 197 REMARK 465 GLU A 198 REMARK 465 GLU A 199 REMARK 465 GLY A 200 REMARK 465 PHE A 201 REMARK 465 MSE B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 122 REMARK 465 ASP B 123 REMARK 465 VAL B 124 REMARK 465 PRO B 125 REMARK 465 GLY B 126 REMARK 465 ILE B 127 REMARK 465 ARG B 128 REMARK 465 PHE B 129 REMARK 465 SER B 130 REMARK 465 VAL B 131 REMARK 465 LEU B 132 REMARK 465 LEU B 133 REMARK 465 GLU B 134 REMARK 465 ASP B 135 REMARK 465 LYS B 136 REMARK 465 PRO B 137 REMARK 465 GLY B 138 REMARK 465 GLU B 139 REMARK 465 LEU B 140 REMARK 465 ARG B 141 REMARK 465 LYS B 142 REMARK 465 VAL B 143 REMARK 465 VAL B 144 REMARK 465 ASP B 145 REMARK 465 ALA B 146 REMARK 465 LEU B 147 REMARK 465 ALA B 148 REMARK 465 LEU B 149 REMARK 465 SER B 150 REMARK 465 ASN B 151 REMARK 465 ILE B 152 REMARK 465 ASN B 153 REMARK 465 ILE B 154 REMARK 465 LEU B 155 REMARK 465 SER B 156 REMARK 465 VAL B 157 REMARK 465 ILE B 158 REMARK 465 THR B 159 REMARK 465 THR B 160 REMARK 465 ARG B 161 REMARK 465 SER B 162 REMARK 465 GLY B 163 REMARK 465 ASP B 164 REMARK 465 GLY B 165 REMARK 465 LYS B 166 REMARK 465 ARG B 167 REMARK 465 GLU B 168 REMARK 465 VAL B 169 REMARK 465 LEU B 170 REMARK 465 ILE B 171 REMARK 465 LYS B 172 REMARK 465 VAL B 173 REMARK 465 ASP B 174 REMARK 465 ALA B 175 REMARK 465 VAL B 176 REMARK 465 ASP B 177 REMARK 465 GLU B 178 REMARK 465 GLY B 179 REMARK 465 THR B 180 REMARK 465 LEU B 181 REMARK 465 ILE B 182 REMARK 465 LYS B 183 REMARK 465 LEU B 184 REMARK 465 PHE B 185 REMARK 465 GLU B 186 REMARK 465 SER B 187 REMARK 465 LEU B 188 REMARK 465 GLY B 189 REMARK 465 ILE B 190 REMARK 465 LYS B 191 REMARK 465 ILE B 192 REMARK 465 GLU B 193 REMARK 465 SER B 194 REMARK 465 ILE B 195 REMARK 465 GLU B 196 REMARK 465 LYS B 197 REMARK 465 GLU B 198 REMARK 465 GLU B 199 REMARK 465 GLY B 200 REMARK 465 PHE B 201 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 26 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 120 -172.53 146.38 REMARK 500 ALA B 119 -58.01 86.22 REMARK 500 LEU B 120 -135.64 -89.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282761 RELATED DB: TARGETDB DBREF 1VR9 A 1 201 UNP Q9WZZ4 Q9WZZ4_THEMA 1 201 DBREF 1VR9 B 1 201 UNP Q9WZZ4 Q9WZZ4_THEMA 1 201 SEQADV 1VR9 MSE A -11 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 GLY A -10 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 SER A -9 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 ASP A -8 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 LYS A -7 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 ILE A -6 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 HIS A -5 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 HIS A -4 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 HIS A -3 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 HIS A -2 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 HIS A -1 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 HIS A 0 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 MSE A 1 UNP Q9WZZ4 MET 1 MODIFIED RESIDUE SEQADV 1VR9 MSE A 13 UNP Q9WZZ4 MET 13 MODIFIED RESIDUE SEQADV 1VR9 MSE A 27 UNP Q9WZZ4 MET 27 MODIFIED RESIDUE SEQADV 1VR9 MSE A 101 UNP Q9WZZ4 MET 101 MODIFIED RESIDUE SEQADV 1VR9 MSE A 122 UNP Q9WZZ4 MET 122 MODIFIED RESIDUE SEQADV 1VR9 MSE B -11 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 GLY B -10 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 SER B -9 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 ASP B -8 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 LYS B -7 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 ILE B -6 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 HIS B -5 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 HIS B -4 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 HIS B -3 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 HIS B -2 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 HIS B -1 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 HIS B 0 UNP Q9WZZ4 EXPRESSION TAG SEQADV 1VR9 MSE B 1 UNP Q9WZZ4 MET 1 MODIFIED RESIDUE SEQADV 1VR9 MSE B 13 UNP Q9WZZ4 MET 13 MODIFIED RESIDUE SEQADV 1VR9 MSE B 27 UNP Q9WZZ4 MET 27 MODIFIED RESIDUE SEQADV 1VR9 MSE B 101 UNP Q9WZZ4 MET 101 MODIFIED RESIDUE SEQADV 1VR9 MSE B 122 UNP Q9WZZ4 MET 122 MODIFIED RESIDUE SEQRES 1 A 213 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 213 LYS VAL LYS LYS TRP VAL THR GLN ASP PHE PRO MSE VAL SEQRES 3 A 213 GLU GLU SER ALA THR VAL ARG GLU CYS LEU HIS ARG MSE SEQRES 4 A 213 ARG GLN TYR GLN THR ASN GLU CYS ILE VAL LYS ASP ARG SEQRES 5 A 213 GLU GLY HIS PHE ARG GLY VAL VAL ASN LYS GLU ASP LEU SEQRES 6 A 213 LEU ASP LEU ASP LEU ASP SER SER VAL PHE ASN LYS VAL SEQRES 7 A 213 SER LEU PRO ASP PHE PHE VAL HIS GLU GLU ASP ASN ILE SEQRES 8 A 213 THR HIS ALA LEU LEU LEU PHE LEU GLU HIS GLN GLU PRO SEQRES 9 A 213 TYR LEU PRO VAL VAL ASP GLU GLU MSE ARG LEU LYS GLY SEQRES 10 A 213 ALA VAL SER LEU HIS ASP PHE LEU GLU ALA LEU ILE GLU SEQRES 11 A 213 ALA LEU ALA MSE ASP VAL PRO GLY ILE ARG PHE SER VAL SEQRES 12 A 213 LEU LEU GLU ASP LYS PRO GLY GLU LEU ARG LYS VAL VAL SEQRES 13 A 213 ASP ALA LEU ALA LEU SER ASN ILE ASN ILE LEU SER VAL SEQRES 14 A 213 ILE THR THR ARG SER GLY ASP GLY LYS ARG GLU VAL LEU SEQRES 15 A 213 ILE LYS VAL ASP ALA VAL ASP GLU GLY THR LEU ILE LYS SEQRES 16 A 213 LEU PHE GLU SER LEU GLY ILE LYS ILE GLU SER ILE GLU SEQRES 17 A 213 LYS GLU GLU GLY PHE SEQRES 1 B 213 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 B 213 LYS VAL LYS LYS TRP VAL THR GLN ASP PHE PRO MSE VAL SEQRES 3 B 213 GLU GLU SER ALA THR VAL ARG GLU CYS LEU HIS ARG MSE SEQRES 4 B 213 ARG GLN TYR GLN THR ASN GLU CYS ILE VAL LYS ASP ARG SEQRES 5 B 213 GLU GLY HIS PHE ARG GLY VAL VAL ASN LYS GLU ASP LEU SEQRES 6 B 213 LEU ASP LEU ASP LEU ASP SER SER VAL PHE ASN LYS VAL SEQRES 7 B 213 SER LEU PRO ASP PHE PHE VAL HIS GLU GLU ASP ASN ILE SEQRES 8 B 213 THR HIS ALA LEU LEU LEU PHE LEU GLU HIS GLN GLU PRO SEQRES 9 B 213 TYR LEU PRO VAL VAL ASP GLU GLU MSE ARG LEU LYS GLY SEQRES 10 B 213 ALA VAL SER LEU HIS ASP PHE LEU GLU ALA LEU ILE GLU SEQRES 11 B 213 ALA LEU ALA MSE ASP VAL PRO GLY ILE ARG PHE SER VAL SEQRES 12 B 213 LEU LEU GLU ASP LYS PRO GLY GLU LEU ARG LYS VAL VAL SEQRES 13 B 213 ASP ALA LEU ALA LEU SER ASN ILE ASN ILE LEU SER VAL SEQRES 14 B 213 ILE THR THR ARG SER GLY ASP GLY LYS ARG GLU VAL LEU SEQRES 15 B 213 ILE LYS VAL ASP ALA VAL ASP GLU GLY THR LEU ILE LYS SEQRES 16 B 213 LEU PHE GLU SER LEU GLY ILE LYS ILE GLU SER ILE GLU SEQRES 17 B 213 LYS GLU GLU GLY PHE MODRES 1VR9 MSE A 1 MET SELENOMETHIONINE MODRES 1VR9 MSE A 13 MET SELENOMETHIONINE MODRES 1VR9 MSE A 27 MET SELENOMETHIONINE MODRES 1VR9 MSE A 101 MET SELENOMETHIONINE MODRES 1VR9 MSE B 1 MET SELENOMETHIONINE MODRES 1VR9 MSE B 13 MET SELENOMETHIONINE MODRES 1VR9 MSE B 27 MET SELENOMETHIONINE MODRES 1VR9 MSE B 101 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 13 11 HET MSE A 27 11 HET MSE A 101 10 HET MSE B 1 8 HET MSE B 13 8 HET MSE B 27 11 HET MSE B 101 11 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 HOH *242(H2 O) HELIX 1 1 LYS A 2 VAL A 7 5 6 HELIX 2 2 THR A 19 TYR A 30 1 12 HELIX 3 3 GLU A 51 LEU A 54 5 4 HELIX 4 4 VAL A 62 VAL A 66 5 5 HELIX 5 5 ASN A 78 HIS A 89 1 12 HELIX 6 6 LEU A 109 ALA A 119 1 11 HELIX 7 7 LYS B 2 VAL B 7 5 6 HELIX 8 8 THR B 19 TYR B 30 1 12 HELIX 9 9 GLU B 51 LEU B 54 5 4 HELIX 10 10 ASN B 78 THR B 80 5 3 HELIX 11 11 HIS B 81 HIS B 89 1 9 HELIX 12 12 LEU B 109 GLU B 118 1 10 SHEET 1 A 3 MSE A 13 GLU A 15 0 SHEET 2 A 3 GLU A 34 LYS A 38 1 O ILE A 36 N VAL A 14 SHEET 3 A 3 PHE A 44 ASN A 49 -1 O GLY A 46 N VAL A 37 SHEET 1 B 3 VAL A 73 HIS A 74 0 SHEET 2 B 3 TYR A 93 VAL A 97 1 O VAL A 97 N VAL A 73 SHEET 3 B 3 LEU A 103 SER A 108 -1 O LYS A 104 N VAL A 96 SHEET 1 C 3 MSE B 13 GLU B 15 0 SHEET 2 C 3 GLU B 34 LYS B 38 1 O ILE B 36 N VAL B 14 SHEET 3 C 3 PHE B 44 ASN B 49 -1 O GLY B 46 N VAL B 37 SHEET 1 D 3 VAL B 73 HIS B 74 0 SHEET 2 D 3 TYR B 93 VAL B 97 1 O VAL B 97 N VAL B 73 SHEET 3 D 3 LEU B 103 SER B 108 -1 O LYS B 104 N VAL B 96 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C PRO A 12 N MSE A 13 1555 1555 1.33 LINK C MSE A 13 N VAL A 14 1555 1555 1.34 LINK C ARG A 26 N MSE A 27 1555 1555 1.33 LINK C MSE A 27 N ARG A 28 1555 1555 1.34 LINK C GLU A 100 N MSE A 101 1555 1555 1.34 LINK C MSE A 101 N ARG A 102 1555 1555 1.33 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C PRO B 12 N MSE B 13 1555 1555 1.32 LINK C MSE B 13 N VAL B 14 1555 1555 1.34 LINK C ARG B 26 N MSE B 27 1555 1555 1.32 LINK C MSE B 27 N ARG B 28 1555 1555 1.33 LINK C GLU B 100 N MSE B 101 1555 1555 1.34 LINK C MSE B 101 N ARG B 102 1555 1555 1.33 CRYST1 228.040 52.647 44.161 90.00 100.44 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004385 0.000000 0.000808 0.00000 SCALE2 0.000000 0.018994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023026 0.00000 HETATM 1 N MSE A 1 -24.441 -4.016 -11.409 1.00 40.99 N HETATM 2 CA MSE A 1 -24.796 -3.204 -12.608 1.00 40.17 C HETATM 3 C MSE A 1 -25.842 -2.142 -12.230 1.00 39.36 C HETATM 4 O MSE A 1 -26.399 -2.169 -11.127 1.00 39.34 O HETATM 5 CB MSE A 1 -25.298 -4.131 -13.736 1.00 41.22 C HETATM 6 CG MSE A 1 -25.710 -3.444 -15.038 1.00 43.27 C HETATM 7 SE MSE A 1 -24.486 -2.050 -15.651 1.00 53.61 SE HETATM 8 CE MSE A 1 -22.928 -3.144 -16.078 1.00 51.41 C