data_1VRO
# 
_entry.id   1VRO 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.383 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1VRO         pdb_00001vro 10.2210/pdb1vro/pdb 
NDB   ZD0015       ?            ?                   
RCSB  RCSB002092   ?            ?                   
WWPDB D_1000002092 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2005-04-19 
2 'Structure model' 1 1 2008-04-27 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2019-07-24 
5 'Structure model' 1 4 2023-12-27 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Data collection'           
4 4 'Structure model' 'Derived calculations'      
5 4 'Structure model' 'Refinement description'    
6 5 'Structure model' 'Data collection'           
7 5 'Structure model' 'Database references'       
8 5 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' software               
2 4 'Structure model' struct_conn            
3 5 'Structure model' chem_comp_atom         
4 5 'Structure model' chem_comp_bond         
5 5 'Structure model' database_2             
6 5 'Structure model' pdbx_struct_conn_angle 
7 5 'Structure model' struct_conn            
8 5 'Structure model' struct_site            
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  4 'Structure model' '_software.classification'                    
2  4 'Structure model' '_software.name'                              
3  4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'         
4  5 'Structure model' '_database_2.pdbx_DOI'                        
5  5 'Structure model' '_database_2.pdbx_database_accession'         
6  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'  
7  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
8  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 
9  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 
10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 
11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'  
12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'  
13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 
15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 
16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 
17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'  
18 5 'Structure model' '_pdbx_struct_conn_angle.value'               
19 5 'Structure model' '_struct_conn.pdbx_dist_value'                
20 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id'             
21 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'              
22 5 'Structure model' '_struct_conn.ptnr1_label_asym_id'            
23 5 'Structure model' '_struct_conn.ptnr1_label_atom_id'            
24 5 'Structure model' '_struct_conn.ptnr1_label_comp_id'            
25 5 'Structure model' '_struct_conn.ptnr1_label_seq_id'             
26 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id'             
27 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
28 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
29 5 'Structure model' '_struct_conn.ptnr2_label_atom_id'            
30 5 'Structure model' '_struct_conn.ptnr2_label_comp_id'            
31 5 'Structure model' '_struct_conn.ptnr2_label_seq_id'             
32 5 'Structure model' '_struct_site.pdbx_auth_asym_id'              
33 5 'Structure model' '_struct_site.pdbx_auth_comp_id'              
34 5 'Structure model' '_struct_site.pdbx_auth_seq_id'               
# 
_pdbx_database_PDB_obs_spr.id               SPRSDE 
_pdbx_database_PDB_obs_spr.date             2005-04-19 
_pdbx_database_PDB_obs_spr.pdb_id           1vro 
_pdbx_database_PDB_obs_spr.replace_pdb_id   1n6s 
_pdbx_database_PDB_obs_spr.details          ? 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1VRO 
_pdbx_database_status.recvd_initial_deposition_date   2005-04-14 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Wilds, C.J.'    1 
'Pattanayek, R.' 2 
'Pan, C.'        3 
'Wawrzak, Z.'    4 
'Egli, M.'       5 
# 
_citation.id                        primary 
_citation.title                     
'Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates for MAD Phasing of a DNA Structure' 
_citation.journal_abbrev            J.Am.Chem.Soc. 
_citation.journal_volume            124 
_citation.page_first                14910 
_citation.page_last                 14916 
_citation.year                      2002 
_citation.journal_id_ASTM           JACSAT 
_citation.country                   US 
_citation.journal_id_ISSN           0002-7863 
_citation.journal_id_CSD            0004 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   12475332 
_citation.pdbx_database_id_DOI      10.1021/ja021058b 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Wilds, C.J.'    1 ? 
primary 'Pattanayek, R.' 2 ? 
primary 'Pan, C.'        3 ? 
primary 'Wawrzak, Z.'    4 ? 
primary 'Egli, M.'       5 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn "5'-D(*CP*(GMS)P*CP*GP*CP*G)-3'" 1873.166 2  ? ? ? ? 
2 non-polymer syn SPERMINE                         202.340  1  ? ? ? ? 
3 non-polymer syn 'MAGNESIUM ION'                  24.305   1  ? ? ? ? 
4 water       nat water                            18.015   73 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   yes 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(GMS)(DC)(DG)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCGCG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 SPERMINE        SPM 
3 'MAGNESIUM ION' MG  
4 water           HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 DC  n 
1 2 GMS n 
1 3 DC  n 
1 4 DG  n 
1 5 DC  n 
1 6 DG  n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    ? 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       ? 
_pdbx_entity_src_syn.details                
;synthesized with a solid-phase oligonucleotide synthesizer using DNA phosphoramidites and potassium selenocyanide for introducing the phosphoroselenoate linkage
;
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"        ? 'C9 H14 N3 O7 P'     307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"       ? 'C10 H14 N5 O7 P'    347.221 
GMS 'DNA linking' n "2'-DEOXYGUANOSINE-5'-MONOSELENOPHOSPHATE" ? 'C10 H14 N5 O6 P Se' 410.182 
HOH non-polymer   . WATER                                      ? 'H2 O'               18.015  
MG  non-polymer   . 'MAGNESIUM ION'                            ? 'Mg 2'               24.305  
SPM non-polymer   . SPERMINE                                   ? 'C10 H26 N4'         202.340 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 DC  1 1   1   DC  C   A . n 
A 1 2 GMS 2 2   2   GMS GMS A . n 
A 1 3 DC  3 3   3   DC  C   A . n 
A 1 4 DG  4 4   4   DG  G   A . n 
A 1 5 DC  5 5   5   DC  C   A . n 
A 1 6 DG  6 6   6   DG  G   A . n 
B 1 1 DC  1 107 107 DC  C   B . n 
B 1 2 GMS 2 108 108 GMS GMS B . n 
B 1 3 DC  3 109 109 DC  C   B . n 
B 1 4 DG  4 110 110 DG  G   B . n 
B 1 5 DC  5 111 111 DC  C   B . n 
B 1 6 DG  6 112 112 DG  G   B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 SPM 1  201 201 SPM SPM A . 
D 3 MG  1  301 301 MG  MG  B . 
E 4 HOH 1  401 401 HOH HOH A . 
E 4 HOH 2  402 402 HOH HOH A . 
E 4 HOH 3  405 405 HOH HOH A . 
E 4 HOH 4  406 406 HOH HOH A . 
E 4 HOH 5  407 407 HOH HOH A . 
E 4 HOH 6  408 408 HOH HOH A . 
E 4 HOH 7  410 410 HOH HOH A . 
E 4 HOH 8  411 411 HOH HOH A . 
E 4 HOH 9  415 415 HOH HOH A . 
E 4 HOH 10 416 416 HOH HOH A . 
E 4 HOH 11 417 417 HOH HOH A . 
E 4 HOH 12 419 419 HOH HOH A . 
E 4 HOH 13 424 424 HOH HOH A . 
E 4 HOH 14 426 426 HOH HOH A . 
E 4 HOH 15 430 430 HOH HOH A . 
E 4 HOH 16 432 432 HOH HOH A . 
E 4 HOH 17 433 433 HOH HOH A . 
E 4 HOH 18 436 436 HOH HOH A . 
E 4 HOH 19 438 438 HOH HOH A . 
E 4 HOH 20 441 441 HOH HOH A . 
E 4 HOH 21 442 442 HOH HOH A . 
E 4 HOH 22 443 443 HOH HOH A . 
E 4 HOH 23 446 446 HOH HOH A . 
E 4 HOH 24 447 447 HOH HOH A . 
E 4 HOH 25 450 450 HOH HOH A . 
E 4 HOH 26 451 451 HOH HOH A . 
E 4 HOH 27 453 453 HOH HOH A . 
E 4 HOH 28 454 454 HOH HOH A . 
E 4 HOH 29 455 455 HOH HOH A . 
E 4 HOH 30 457 457 HOH HOH A . 
E 4 HOH 31 458 458 HOH HOH A . 
E 4 HOH 32 459 459 HOH HOH A . 
E 4 HOH 33 460 460 HOH HOH A . 
E 4 HOH 34 461 461 HOH HOH A . 
E 4 HOH 35 463 463 HOH HOH A . 
E 4 HOH 36 464 464 HOH HOH A . 
E 4 HOH 37 469 469 HOH HOH A . 
F 4 HOH 1  403 403 HOH HOH B . 
F 4 HOH 2  404 404 HOH HOH B . 
F 4 HOH 3  409 409 HOH HOH B . 
F 4 HOH 4  412 412 HOH HOH B . 
F 4 HOH 5  413 413 HOH HOH B . 
F 4 HOH 6  414 414 HOH HOH B . 
F 4 HOH 7  418 418 HOH HOH B . 
F 4 HOH 8  420 420 HOH HOH B . 
F 4 HOH 9  421 421 HOH HOH B . 
F 4 HOH 10 422 422 HOH HOH B . 
F 4 HOH 11 423 423 HOH HOH B . 
F 4 HOH 12 425 425 HOH HOH B . 
F 4 HOH 13 427 427 HOH HOH B . 
F 4 HOH 14 428 428 HOH HOH B . 
F 4 HOH 15 429 429 HOH HOH B . 
F 4 HOH 16 431 431 HOH HOH B . 
F 4 HOH 17 434 434 HOH HOH B . 
F 4 HOH 18 435 435 HOH HOH B . 
F 4 HOH 19 437 437 HOH HOH B . 
F 4 HOH 20 439 439 HOH HOH B . 
F 4 HOH 21 440 440 HOH HOH B . 
F 4 HOH 22 444 444 HOH HOH B . 
F 4 HOH 23 445 445 HOH HOH B . 
F 4 HOH 24 448 448 HOH HOH B . 
F 4 HOH 25 449 449 HOH HOH B . 
F 4 HOH 26 452 452 HOH HOH B . 
F 4 HOH 27 456 456 HOH HOH B . 
F 4 HOH 28 462 462 HOH HOH B . 
F 4 HOH 29 465 465 HOH HOH B . 
F 4 HOH 30 466 466 HOH HOH B . 
F 4 HOH 31 467 467 HOH HOH B . 
F 4 HOH 32 468 468 HOH HOH B . 
F 4 HOH 33 470 470 HOH HOH B . 
F 4 HOH 34 471 471 HOH HOH B . 
F 4 HOH 35 472 472 HOH HOH B . 
F 4 HOH 36 473 473 HOH HOH B . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
SHELXL-97 refinement       . ? 1 
SCALEPACK 'data scaling'   . ? 2 
CNS       refinement       . ? 3 
DENZO     'data reduction' . ? 4 
CNS       phasing          . ? 5 
# 
_cell.entry_id           1VRO 
_cell.length_a           17.778 
_cell.length_b           31.348 
_cell.length_c           44.116 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.pdbx_unique_axis   ? 
_cell.Z_PDB              8 
# 
_symmetry.entry_id                         1VRO 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.Int_Tables_number                19 
_symmetry.cell_setting                     ? 
_symmetry.space_group_name_Hall            ? 
# 
_exptl.entry_id          1VRO 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      1.32 
_exptl_crystal.density_percent_sol   5.98 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, SITTING DROP' 
_exptl_crystal_grow.temp            291.0 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              7.0 
_exptl_crystal_grow.pdbx_details    
;0.5mM DNA, 4mM-15mM magnesium chloride, 50mM sodium cacodylate, 2mM-8mM spermine tetrahydrochloride and reservoir 30% 2-methyl-2,4-pentanediol, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 291.0K
;
_exptl_crystal_grow.pdbx_pH_range   . 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 DNA                           ? ? ? 
1 2 1 MgCl                          ? ? ? 
1 3 1 'sodium cacodylate'           ? ? ? 
1 4 1 'spermine tetrahydrochloride' ? ? ? 
1 5 2 MPD                           ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           120 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               CCD 
_diffrn_detector.type                   MARRESEARCH 
_diffrn_detector.pdbx_collection_date   2002-01-22 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    graphite 
_diffrn_radiation.pdbx_diffrn_protocol             MAD 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
loop_
_diffrn_radiation_wavelength.id 
_diffrn_radiation_wavelength.wavelength 
_diffrn_radiation_wavelength.wt 
1 0.9561 1.0 
2 0.9787 1.0 
3 0.9784 1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'APS BEAMLINE 5ID-B' 
_diffrn_source.pdbx_synchrotron_site       APS 
_diffrn_source.pdbx_synchrotron_beamline   5ID-B 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        '0.9561, 0.9787, 0.9784' 
# 
_reflns.entry_id                     1VRO 
_reflns.observed_criterion_sigma_F   0.0 
_reflns.observed_criterion_sigma_I   0.0 
_reflns.d_resolution_high            1.1 
_reflns.d_resolution_low             20.0 
_reflns.number_all                   10197 
_reflns.number_obs                   9718 
_reflns.percent_possible_obs         97.7 
_reflns.pdbx_Rmerge_I_obs            0.041 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        22.7 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              7.47 
_reflns.R_free_details               ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_reflns_shell.d_res_high             1.10 
_reflns_shell.d_res_low              1.14 
_reflns_shell.percent_possible_all   95.4 
_reflns_shell.Rmerge_I_obs           0.075 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    15.85 
_reflns_shell.pdbx_redundancy        7.47 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      1802 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
_reflns_shell.pdbx_diffrn_id         ? 
_reflns_shell.pdbx_ordinal           1 
# 
_refine.entry_id                                 1VRO 
_refine.ls_d_res_high                            1.10 
_refine.ls_d_res_low                             20.0 
_refine.pdbx_ls_sigma_F                          0.0 
_refine.pdbx_ls_sigma_I                          0.0 
_refine.ls_number_reflns_all                     9718 
_refine.ls_number_reflns_obs                     9718 
_refine.ls_number_reflns_R_free                  508 
_refine.ls_percent_reflns_obs                    97.7 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_obs                          ? 
_refine.ls_R_factor_R_work                       0.097 
_refine.ls_R_factor_R_free                       0.129 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.ls_number_parameters                     3005 
_refine.ls_number_restraints                     5144 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.pdbx_method_to_determine_struct          MAD 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.pdbx_R_Free_selection_details            random 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_stereochemistry_target_values       'Engh & Huber' 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_bsol                 ? 
_refine.solvent_model_param_ksol                 ? 
_refine.occupancy_max                            ? 
_refine.occupancy_min                            ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.B_iso_mean                               6.9 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.details                                  Shelx-97 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.overall_SU_B                             ? 
_refine.overall_SU_ML                            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   245 
_refine_hist.pdbx_number_atoms_ligand         15 
_refine_hist.number_atoms_solvent             73 
_refine_hist.number_atoms_total               333 
_refine_hist.d_res_high                       1.10 
_refine_hist.d_res_low                        20.0 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
s_bond_d  0.028 ? ? ? 'X-RAY DIFFRACTION' ? 
s_angle_d 0.022 ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_pdbx_refine.entry_id                                    1VRO 
_pdbx_refine.R_factor_all_no_cutoff                      ? 
_pdbx_refine.R_factor_obs_no_cutoff                      0.097 
_pdbx_refine.number_reflns_obs_no_cutoff                 9718 
_pdbx_refine.free_R_factor_no_cutoff                     0.129 
_pdbx_refine.free_R_val_test_set_ct_no_cutoff            508 
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff     5 
_pdbx_refine.R_factor_all_4sig_cutoff                    ? 
_pdbx_refine.R_factor_obs_4sig_cutoff                    0.096 
_pdbx_refine.number_reflns_obs_4sig_cutoff               9692 
_pdbx_refine.free_R_factor_4sig_cutoff                   0.129 
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff          508 
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff   5 
_pdbx_refine.pdbx_refine_id                              'X-RAY DIFFRACTION' 
_pdbx_refine.free_R_error_no_cutoff                      ? 
# 
_database_PDB_matrix.entry_id          1VRO 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1VRO 
_struct.title                     
'Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates for MAD Phasing of a DNA Structure' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1VRO 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            
;Left-handed Z-DNA, phosphoroselenoate, multiwavelength anomalous dispersion (MAD), covalent modification of oligonucleotides, oligonucleotide analogue, phasing strategy, synchrotron, DNA
;
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 3 ? 
E N N 4 ? 
F N N 4 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1VRO 
_struct_ref.pdbx_db_accession          1VRO 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1VRO A 1 ? 6 ? 1VRO 1   ? 6   ? 1   6   
2 1 1VRO B 1 ? 6 ? 1VRO 107 ? 112 ? 107 112 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale one  ? A DC  1 "O3'" A ? ? 1_555 A GMS 2 P  A ? A DC  1   A GMS 2   1_555 ? ? ? ? ? ? ?            1.599 ? ? 
covale2  covale one  ? A DC  1 "O3'" B ? ? 1_555 A GMS 2 P  B ? A DC  1   A GMS 2   1_555 ? ? ? ? ? ? ?            1.587 ? ? 
covale3  covale both ? A GMS 2 "O3'" ? ? ? 1_555 A DC  3 P  ? ? A GMS 2   A DC  3   1_555 ? ? ? ? ? ? ?            1.602 ? ? 
covale4  covale one  ? B DC  1 "O3'" ? ? ? 1_555 B GMS 2 P  ? ? B DC  107 B GMS 108 1_555 ? ? ? ? ? ? ?            1.586 ? ? 
covale5  covale both ? B GMS 2 "O3'" ? ? ? 1_555 B DC  3 P  ? ? B GMS 108 B DC  109 1_555 ? ? ? ? ? ? ?            1.637 ? ? 
metalc1  metalc ?    ? B DG  6 N7    ? ? ? 1_555 D MG  . MG ? ? B DG  112 B MG  301 1_555 ? ? ? ? ? ? ?            2.291 ? ? 
metalc2  metalc ?    ? D MG  . MG    ? ? ? 1_555 F HOH . O  ? ? B MG  301 B HOH 418 1_555 ? ? ? ? ? ? ?            2.206 ? ? 
metalc3  metalc ?    ? D MG  . MG    ? ? ? 1_555 F HOH . O  ? ? B MG  301 B HOH 420 1_555 ? ? ? ? ? ? ?            2.020 ? ? 
metalc4  metalc ?    ? D MG  . MG    ? ? ? 1_555 F HOH . O  ? ? B MG  301 B HOH 431 1_555 ? ? ? ? ? ? ?            2.031 ? ? 
metalc5  metalc ?    ? D MG  . MG    ? ? ? 1_555 F HOH . O  ? ? B MG  301 B HOH 437 1_555 ? ? ? ? ? ? ?            2.017 ? ? 
metalc6  metalc ?    ? D MG  . MG    ? ? ? 1_555 F HOH . O  ? ? B MG  301 B HOH 439 1_555 ? ? ? ? ? ? ?            1.989 ? ? 
hydrog1  hydrog ?    ? A DC  1 N3    ? ? ? 1_555 B DG  6 N1 ? ? A DC  1   B DG  112 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?    ? A DC  1 N4    ? ? ? 1_555 B DG  6 O6 ? ? A DC  1   B DG  112 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?    ? A DC  1 O2    ? ? ? 1_555 B DG  6 N2 ? ? A DC  1   B DG  112 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?    ? A GMS 2 N1    ? ? ? 1_555 B DC  5 N3 ? ? A GMS 2   B DC  111 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?    ? A GMS 2 N2    ? ? ? 1_555 B DC  5 O2 ? ? A GMS 2   B DC  111 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?    ? A GMS 2 O6    ? ? ? 1_555 B DC  5 N4 ? ? A GMS 2   B DC  111 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?    ? A DC  3 N3    ? ? ? 1_555 B DG  4 N1 ? ? A DC  3   B DG  110 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?    ? A DC  3 N4    ? ? ? 1_555 B DG  4 O6 ? ? A DC  3   B DG  110 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?    ? A DC  3 O2    ? ? ? 1_555 B DG  4 N2 ? ? A DC  3   B DG  110 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?    ? A DG  4 N1    ? ? ? 1_555 B DC  3 N3 ? ? A DG  4   B DC  109 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?    ? A DG  4 N2    ? ? ? 1_555 B DC  3 O2 ? ? A DG  4   B DC  109 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?    ? A DG  4 O6    ? ? ? 1_555 B DC  3 N4 ? ? A DG  4   B DC  109 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?    ? A DC  5 N3    ? ? ? 1_555 B GMS 2 N1 ? ? A DC  5   B GMS 108 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?    ? A DC  5 N4    ? ? ? 1_555 B GMS 2 O6 ? ? A DC  5   B GMS 108 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?    ? A DC  5 O2    ? ? ? 1_555 B GMS 2 N2 ? ? A DC  5   B GMS 108 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?    ? A DG  6 N1    ? ? ? 1_555 B DC  1 N3 ? ? A DG  6   B DC  107 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ?    ? A DG  6 N2    ? ? ? 1_555 B DC  1 O2 ? ? A DG  6   B DC  107 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ?    ? A DG  6 O6    ? ? ? 1_555 B DC  1 N4 ? ? A DG  6   B DC  107 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
metalc ? ? 
hydrog ? ? 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1  N7 ? B DG  6 ? B DG  112 ? 1_555 MG ? D MG . ? B MG 301 ? 1_555 O ? F HOH . ? B HOH 418 ? 1_555 89.2  ? 
2  N7 ? B DG  6 ? B DG  112 ? 1_555 MG ? D MG . ? B MG 301 ? 1_555 O ? F HOH . ? B HOH 420 ? 1_555 90.0  ? 
3  O  ? F HOH . ? B HOH 418 ? 1_555 MG ? D MG . ? B MG 301 ? 1_555 O ? F HOH . ? B HOH 420 ? 1_555 96.0  ? 
4  N7 ? B DG  6 ? B DG  112 ? 1_555 MG ? D MG . ? B MG 301 ? 1_555 O ? F HOH . ? B HOH 431 ? 1_555 85.5  ? 
5  O  ? F HOH . ? B HOH 418 ? 1_555 MG ? D MG . ? B MG 301 ? 1_555 O ? F HOH . ? B HOH 431 ? 1_555 174.6 ? 
6  O  ? F HOH . ? B HOH 420 ? 1_555 MG ? D MG . ? B MG 301 ? 1_555 O ? F HOH . ? B HOH 431 ? 1_555 83.3  ? 
7  N7 ? B DG  6 ? B DG  112 ? 1_555 MG ? D MG . ? B MG 301 ? 1_555 O ? F HOH . ? B HOH 437 ? 1_555 178.8 ? 
8  O  ? F HOH . ? B HOH 418 ? 1_555 MG ? D MG . ? B MG 301 ? 1_555 O ? F HOH . ? B HOH 437 ? 1_555 92.0  ? 
9  O  ? F HOH . ? B HOH 420 ? 1_555 MG ? D MG . ? B MG 301 ? 1_555 O ? F HOH . ? B HOH 437 ? 1_555 89.8  ? 
10 O  ? F HOH . ? B HOH 431 ? 1_555 MG ? D MG . ? B MG 301 ? 1_555 O ? F HOH . ? B HOH 437 ? 1_555 93.3  ? 
11 N7 ? B DG  6 ? B DG  112 ? 1_555 MG ? D MG . ? B MG 301 ? 1_555 O ? F HOH . ? B HOH 439 ? 1_555 92.3  ? 
12 O  ? F HOH . ? B HOH 418 ? 1_555 MG ? D MG . ? B MG 301 ? 1_555 O ? F HOH . ? B HOH 439 ? 1_555 88.6  ? 
13 O  ? F HOH . ? B HOH 420 ? 1_555 MG ? D MG . ? B MG 301 ? 1_555 O ? F HOH . ? B HOH 439 ? 1_555 174.9 ? 
14 O  ? F HOH . ? B HOH 431 ? 1_555 MG ? D MG . ? B MG 301 ? 1_555 O ? F HOH . ? B HOH 439 ? 1_555 92.3  ? 
15 O  ? F HOH . ? B HOH 437 ? 1_555 MG ? D MG . ? B MG 301 ? 1_555 O ? F HOH . ? B HOH 439 ? 1_555 87.9  ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A SPM 201 ? 14 'BINDING SITE FOR RESIDUE SPM A 201' 
AC2 Software B MG  301 ? 6  'BINDING SITE FOR RESIDUE MG B 301'  
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 14 GMS A 2 ? GMS A 2   . ? 1_555 ? 
2  AC1 14 DC  A 3 ? DC  A 3   . ? 1_455 ? 
3  AC1 14 DG  A 6 ? DG  A 6   . ? 2_565 ? 
4  AC1 14 HOH E . ? HOH A 401 . ? 1_455 ? 
5  AC1 14 HOH E . ? HOH A 408 . ? 1_455 ? 
6  AC1 14 HOH E . ? HOH A 438 . ? 1_455 ? 
7  AC1 14 HOH E . ? HOH A 458 . ? 1_555 ? 
8  AC1 14 GMS B 2 ? GMS B 108 . ? 2_465 ? 
9  AC1 14 DG  B 4 ? DG  B 110 . ? 1_555 ? 
10 AC1 14 DG  B 4 ? DG  B 110 . ? 3_546 ? 
11 AC1 14 DC  B 5 ? DC  B 111 . ? 3_546 ? 
12 AC1 14 DG  B 6 ? DG  B 112 . ? 3_546 ? 
13 AC1 14 HOH F . ? HOH B 414 . ? 1_455 ? 
14 AC1 14 HOH F . ? HOH B 444 . ? 2_465 ? 
15 AC2 6  DG  B 6 ? DG  B 112 . ? 1_555 ? 
16 AC2 6  HOH F . ? HOH B 418 . ? 1_555 ? 
17 AC2 6  HOH F . ? HOH B 420 . ? 1_555 ? 
18 AC2 6  HOH F . ? HOH B 431 . ? 1_555 ? 
19 AC2 6  HOH F . ? HOH B 437 . ? 1_555 ? 
20 AC2 6  HOH F . ? HOH B 439 . ? 1_555 ? 
# 
loop_
_pdbx_validate_close_contact.id 
_pdbx_validate_close_contact.PDB_model_num 
_pdbx_validate_close_contact.auth_atom_id_1 
_pdbx_validate_close_contact.auth_asym_id_1 
_pdbx_validate_close_contact.auth_comp_id_1 
_pdbx_validate_close_contact.auth_seq_id_1 
_pdbx_validate_close_contact.PDB_ins_code_1 
_pdbx_validate_close_contact.label_alt_id_1 
_pdbx_validate_close_contact.auth_atom_id_2 
_pdbx_validate_close_contact.auth_asym_id_2 
_pdbx_validate_close_contact.auth_comp_id_2 
_pdbx_validate_close_contact.auth_seq_id_2 
_pdbx_validate_close_contact.PDB_ins_code_2 
_pdbx_validate_close_contact.label_alt_id_2 
_pdbx_validate_close_contact.dist 
1 1 O B HOH 425 ? ? O B HOH 468 ? ? 2.08 
2 1 O A HOH 459 ? ? O A HOH 463 ? ? 2.16 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC  1 ? ? 110.43 108.30 2.13 0.30 N 
2 1 C5    A DC 1 ? ? C6    A DC 1 ? ? N1 A DC  1 ? ? 124.23 121.00 3.23 0.50 N 
3 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? B P  A GMS 2 ? B 128.47 119.70 8.77 1.20 Y 
# 
loop_
_pdbx_struct_mod_residue.id 
_pdbx_struct_mod_residue.label_asym_id 
_pdbx_struct_mod_residue.label_comp_id 
_pdbx_struct_mod_residue.label_seq_id 
_pdbx_struct_mod_residue.auth_asym_id 
_pdbx_struct_mod_residue.auth_comp_id 
_pdbx_struct_mod_residue.auth_seq_id 
_pdbx_struct_mod_residue.PDB_ins_code 
_pdbx_struct_mod_residue.parent_comp_id 
_pdbx_struct_mod_residue.details 
1 A GMS 2 A GMS 2   ? DG ? 
2 B GMS 2 B GMS 108 ? DG ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DC  OP3    O  N N 1   
DC  P      P  N N 2   
DC  OP1    O  N N 3   
DC  OP2    O  N N 4   
DC  "O5'"  O  N N 5   
DC  "C5'"  C  N N 6   
DC  "C4'"  C  N R 7   
DC  "O4'"  O  N N 8   
DC  "C3'"  C  N S 9   
DC  "O3'"  O  N N 10  
DC  "C2'"  C  N N 11  
DC  "C1'"  C  N R 12  
DC  N1     N  N N 13  
DC  C2     C  N N 14  
DC  O2     O  N N 15  
DC  N3     N  N N 16  
DC  C4     C  N N 17  
DC  N4     N  N N 18  
DC  C5     C  N N 19  
DC  C6     C  N N 20  
DC  HOP3   H  N N 21  
DC  HOP2   H  N N 22  
DC  "H5'"  H  N N 23  
DC  "H5''" H  N N 24  
DC  "H4'"  H  N N 25  
DC  "H3'"  H  N N 26  
DC  "HO3'" H  N N 27  
DC  "H2'"  H  N N 28  
DC  "H2''" H  N N 29  
DC  "H1'"  H  N N 30  
DC  H41    H  N N 31  
DC  H42    H  N N 32  
DC  H5     H  N N 33  
DC  H6     H  N N 34  
DG  OP3    O  N N 35  
DG  P      P  N N 36  
DG  OP1    O  N N 37  
DG  OP2    O  N N 38  
DG  "O5'"  O  N N 39  
DG  "C5'"  C  N N 40  
DG  "C4'"  C  N R 41  
DG  "O4'"  O  N N 42  
DG  "C3'"  C  N S 43  
DG  "O3'"  O  N N 44  
DG  "C2'"  C  N N 45  
DG  "C1'"  C  N R 46  
DG  N9     N  Y N 47  
DG  C8     C  Y N 48  
DG  N7     N  Y N 49  
DG  C5     C  Y N 50  
DG  C6     C  N N 51  
DG  O6     O  N N 52  
DG  N1     N  N N 53  
DG  C2     C  N N 54  
DG  N2     N  N N 55  
DG  N3     N  N N 56  
DG  C4     C  Y N 57  
DG  HOP3   H  N N 58  
DG  HOP2   H  N N 59  
DG  "H5'"  H  N N 60  
DG  "H5''" H  N N 61  
DG  "H4'"  H  N N 62  
DG  "H3'"  H  N N 63  
DG  "HO3'" H  N N 64  
DG  "H2'"  H  N N 65  
DG  "H2''" H  N N 66  
DG  "H1'"  H  N N 67  
DG  H8     H  N N 68  
DG  H1     H  N N 69  
DG  H21    H  N N 70  
DG  H22    H  N N 71  
GMS P      P  N R 72  
GMS OP1    O  N N 73  
GMS SE     SE N N 74  
GMS "O5'"  O  N N 75  
GMS N9     N  Y N 76  
GMS C4     C  Y N 77  
GMS N3     N  N N 78  
GMS C2     C  N N 79  
GMS N2     N  N N 80  
GMS N1     N  N N 81  
GMS C6     C  N N 82  
GMS O6     O  N N 83  
GMS C5     C  Y N 84  
GMS N7     N  Y N 85  
GMS C8     C  Y N 86  
GMS "C2'"  C  N N 87  
GMS "C5'"  C  N N 88  
GMS "C4'"  C  N R 89  
GMS "O4'"  O  N N 90  
GMS "C1'"  C  N R 91  
GMS "C3'"  C  N S 92  
GMS "O3'"  O  N N 93  
GMS OP2    O  N N 94  
GMS HS     H  N N 95  
GMS H21    H  N N 96  
GMS H22    H  N N 97  
GMS H1     H  N N 98  
GMS H8     H  N N 99  
GMS "H2'"  H  N N 100 
GMS "H2''" H  N N 101 
GMS "H5'"  H  N N 102 
GMS "H5''" H  N N 103 
GMS "H4'"  H  N N 104 
GMS "H1'"  H  N N 105 
GMS "H3'"  H  N N 106 
GMS "HO3'" H  N N 107 
GMS HOP2   H  N N 108 
HOH O      O  N N 109 
HOH H1     H  N N 110 
HOH H2     H  N N 111 
MG  MG     MG N N 112 
SPM N1     N  N N 113 
SPM C2     C  N N 114 
SPM C3     C  N N 115 
SPM C4     C  N N 116 
SPM N5     N  N N 117 
SPM C6     C  N N 118 
SPM C7     C  N N 119 
SPM C8     C  N N 120 
SPM C9     C  N N 121 
SPM N10    N  N N 122 
SPM C11    C  N N 123 
SPM C12    C  N N 124 
SPM C13    C  N N 125 
SPM N14    N  N N 126 
SPM HN11   H  N N 127 
SPM HN12   H  N N 128 
SPM H21    H  N N 129 
SPM H22    H  N N 130 
SPM H31    H  N N 131 
SPM H32    H  N N 132 
SPM H41    H  N N 133 
SPM H42    H  N N 134 
SPM HN5    H  N N 135 
SPM H61    H  N N 136 
SPM H62    H  N N 137 
SPM H71    H  N N 138 
SPM H72    H  N N 139 
SPM H81    H  N N 140 
SPM H82    H  N N 141 
SPM H91    H  N N 142 
SPM H92    H  N N 143 
SPM HN0    H  N N 144 
SPM H111   H  N N 145 
SPM H112   H  N N 146 
SPM H121   H  N N 147 
SPM H122   H  N N 148 
SPM H131   H  N N 149 
SPM H132   H  N N 150 
SPM HN41   H  N N 151 
SPM HN42   H  N N 152 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DC  OP3   P      sing N N 1   
DC  OP3   HOP3   sing N N 2   
DC  P     OP1    doub N N 3   
DC  P     OP2    sing N N 4   
DC  P     "O5'"  sing N N 5   
DC  OP2   HOP2   sing N N 6   
DC  "O5'" "C5'"  sing N N 7   
DC  "C5'" "C4'"  sing N N 8   
DC  "C5'" "H5'"  sing N N 9   
DC  "C5'" "H5''" sing N N 10  
DC  "C4'" "O4'"  sing N N 11  
DC  "C4'" "C3'"  sing N N 12  
DC  "C4'" "H4'"  sing N N 13  
DC  "O4'" "C1'"  sing N N 14  
DC  "C3'" "O3'"  sing N N 15  
DC  "C3'" "C2'"  sing N N 16  
DC  "C3'" "H3'"  sing N N 17  
DC  "O3'" "HO3'" sing N N 18  
DC  "C2'" "C1'"  sing N N 19  
DC  "C2'" "H2'"  sing N N 20  
DC  "C2'" "H2''" sing N N 21  
DC  "C1'" N1     sing N N 22  
DC  "C1'" "H1'"  sing N N 23  
DC  N1    C2     sing N N 24  
DC  N1    C6     sing N N 25  
DC  C2    O2     doub N N 26  
DC  C2    N3     sing N N 27  
DC  N3    C4     doub N N 28  
DC  C4    N4     sing N N 29  
DC  C4    C5     sing N N 30  
DC  N4    H41    sing N N 31  
DC  N4    H42    sing N N 32  
DC  C5    C6     doub N N 33  
DC  C5    H5     sing N N 34  
DC  C6    H6     sing N N 35  
DG  OP3   P      sing N N 36  
DG  OP3   HOP3   sing N N 37  
DG  P     OP1    doub N N 38  
DG  P     OP2    sing N N 39  
DG  P     "O5'"  sing N N 40  
DG  OP2   HOP2   sing N N 41  
DG  "O5'" "C5'"  sing N N 42  
DG  "C5'" "C4'"  sing N N 43  
DG  "C5'" "H5'"  sing N N 44  
DG  "C5'" "H5''" sing N N 45  
DG  "C4'" "O4'"  sing N N 46  
DG  "C4'" "C3'"  sing N N 47  
DG  "C4'" "H4'"  sing N N 48  
DG  "O4'" "C1'"  sing N N 49  
DG  "C3'" "O3'"  sing N N 50  
DG  "C3'" "C2'"  sing N N 51  
DG  "C3'" "H3'"  sing N N 52  
DG  "O3'" "HO3'" sing N N 53  
DG  "C2'" "C1'"  sing N N 54  
DG  "C2'" "H2'"  sing N N 55  
DG  "C2'" "H2''" sing N N 56  
DG  "C1'" N9     sing N N 57  
DG  "C1'" "H1'"  sing N N 58  
DG  N9    C8     sing Y N 59  
DG  N9    C4     sing Y N 60  
DG  C8    N7     doub Y N 61  
DG  C8    H8     sing N N 62  
DG  N7    C5     sing Y N 63  
DG  C5    C6     sing N N 64  
DG  C5    C4     doub Y N 65  
DG  C6    O6     doub N N 66  
DG  C6    N1     sing N N 67  
DG  N1    C2     sing N N 68  
DG  N1    H1     sing N N 69  
DG  C2    N2     sing N N 70  
DG  C2    N3     doub N N 71  
DG  N2    H21    sing N N 72  
DG  N2    H22    sing N N 73  
DG  N3    C4     sing N N 74  
GMS P     OP1    doub N N 75  
GMS P     SE     sing N N 76  
GMS P     "O5'"  sing N N 77  
GMS P     OP2    sing N N 78  
GMS SE    HS     sing N N 79  
GMS "O5'" "C5'"  sing N N 80  
GMS N9    C4     sing Y N 81  
GMS N9    C8     sing Y N 82  
GMS N9    "C1'"  sing N N 83  
GMS C4    N3     sing N N 84  
GMS C4    C5     doub Y N 85  
GMS N3    C2     doub N N 86  
GMS C2    N2     sing N N 87  
GMS C2    N1     sing N N 88  
GMS N2    H21    sing N N 89  
GMS N2    H22    sing N N 90  
GMS N1    C6     sing N N 91  
GMS N1    H1     sing N N 92  
GMS C6    O6     doub N N 93  
GMS C6    C5     sing N N 94  
GMS C5    N7     sing Y N 95  
GMS N7    C8     doub Y N 96  
GMS C8    H8     sing N N 97  
GMS "C2'" "C1'"  sing N N 98  
GMS "C2'" "C3'"  sing N N 99  
GMS "C2'" "H2'"  sing N N 100 
GMS "C2'" "H2''" sing N N 101 
GMS "C5'" "C4'"  sing N N 102 
GMS "C5'" "H5'"  sing N N 103 
GMS "C5'" "H5''" sing N N 104 
GMS "C4'" "O4'"  sing N N 105 
GMS "C4'" "C3'"  sing N N 106 
GMS "C4'" "H4'"  sing N N 107 
GMS "O4'" "C1'"  sing N N 108 
GMS "C1'" "H1'"  sing N N 109 
GMS "C3'" "O3'"  sing N N 110 
GMS "C3'" "H3'"  sing N N 111 
GMS "O3'" "HO3'" sing N N 112 
GMS OP2   HOP2   sing N N 113 
HOH O     H1     sing N N 114 
HOH O     H2     sing N N 115 
SPM N1    C2     sing N N 116 
SPM N1    HN11   sing N N 117 
SPM N1    HN12   sing N N 118 
SPM C2    C3     sing N N 119 
SPM C2    H21    sing N N 120 
SPM C2    H22    sing N N 121 
SPM C3    C4     sing N N 122 
SPM C3    H31    sing N N 123 
SPM C3    H32    sing N N 124 
SPM C4    N5     sing N N 125 
SPM C4    H41    sing N N 126 
SPM C4    H42    sing N N 127 
SPM N5    C6     sing N N 128 
SPM N5    HN5    sing N N 129 
SPM C6    C7     sing N N 130 
SPM C6    H61    sing N N 131 
SPM C6    H62    sing N N 132 
SPM C7    C8     sing N N 133 
SPM C7    H71    sing N N 134 
SPM C7    H72    sing N N 135 
SPM C8    C9     sing N N 136 
SPM C8    H81    sing N N 137 
SPM C8    H82    sing N N 138 
SPM C9    N10    sing N N 139 
SPM C9    H91    sing N N 140 
SPM C9    H92    sing N N 141 
SPM N10   C11    sing N N 142 
SPM N10   HN0    sing N N 143 
SPM C11   C12    sing N N 144 
SPM C11   H111   sing N N 145 
SPM C11   H112   sing N N 146 
SPM C12   C13    sing N N 147 
SPM C12   H121   sing N N 148 
SPM C12   H122   sing N N 149 
SPM C13   N14    sing N N 150 
SPM C13   H131   sing N N 151 
SPM C13   H132   sing N N 152 
SPM N14   HN41   sing N N 153 
SPM N14   HN42   sing N N 154 
# 
_ndb_struct_conf_na.entry_id   1VRO 
_ndb_struct_conf_na.feature    'z-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC  1 1_555 B DG  6 1_555 -0.346 -0.169 0.195  -5.715 4.355  2.504 1 A_DC1:DG112_B  A 1 ? B 112 ? 19 1 
1 A GMS 2 1_555 B DC  5 1_555 0.154  -0.116 0.003  -1.466 0.316  2.413 2 A_GMS2:DC111_B A 2 ? B 111 ? 19 1 
1 A DC  3 1_555 B DG  4 1_555 -0.190 -0.154 0.090  7.137  0.355  2.724 3 A_DC3:DG110_B  A 3 ? B 110 ? 19 1 
1 A DG  4 1_555 B DC  3 1_555 0.252  -0.138 -0.016 -4.848 -3.457 1.198 4 A_DG4:DC109_B  A 4 ? B 109 ? 19 1 
1 A DC  5 1_555 B GMS 2 1_555 -0.269 -0.153 -0.063 7.284  -4.011 1.520 5 A_DC5:GMS108_B A 5 ? B 108 ? 19 1 
1 A DG  6 1_555 B DC  1 1_555 0.243  -0.141 0.039  -4.017 0.655  0.434 6 A_DG6:DC107_B  A 6 ? B 107 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC  1 1_555 B DG  6 1_555 A GMS 2 1_555 B DC  5 1_555 -0.052 5.145  3.371 -1.605 -1.020 -7.401  -34.895 -6.234 3.940 7.736  
-12.170 -7.641  1 AA_DC1GMS2:DC111DG112_BB A 1 ? B 112 ? A 2 ? B 111 ? 
1 A GMS 2 1_555 B DC  5 1_555 A DC  3 1_555 B DG  4 1_555 0.204  -0.895 3.231 -1.003 -2.512 -53.672 1.144   0.165  3.193 2.781  
-1.110  -53.735 2 AA_GMS2DC3:DG110DC111_BB A 2 ? B 111 ? A 3 ? B 110 ? 
1 A DC  3 1_555 B DG  4 1_555 A DG  4 1_555 B DC  3 1_555 0.009  5.458  3.769 0.339  -3.330 -5.811  -24.521 2.326  5.975 29.805 
3.032   -6.705  3 AA_DC3DG4:DC109DG110_BB  A 3 ? B 110 ? A 4 ? B 109 ? 
1 A DG  4 1_555 B DC  3 1_555 A DC  5 1_555 B GMS 2 1_555 0.075  -1.054 3.216 -0.106 -5.671 -51.765 1.567   0.078  3.093 6.473  
-0.121  -52.053 4 AA_DG4DC5:GMS108DC109_BB A 4 ? B 109 ? A 5 ? B 108 ? 
1 A DC  5 1_555 B GMS 2 1_555 A DG  6 1_555 B DC  1 1_555 0.040  5.365  3.684 -0.482 -3.911 -6.079  -20.012 -2.450 5.989 32.727 
-4.035  -7.244  5 AA_DC5DG6:DC107GMS108_BB A 5 ? B 108 ? A 6 ? B 107 ? 
# 
_atom_sites.entry_id                    1VRO 
_atom_sites.fract_transf_matrix[1][1]   0.056249 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.031900 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.022668 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C  
MG 
N  
O  
P  
SE 
# 
loop_