HEADER TRANSFERASE 25-APR-05 1VRP TITLE THE 2.1 STRUCTURE OF T. CALIFORNICA CREATINE KINASE COMPLEXED WITH THE TITLE 2 TRANSITION-STATE ANALOGUE COMPLEX, ADP-MG 2+ /NO3-/CREATINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CREATINE KINASE, M CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M-CK; COMPND 5 EC: 2.7.3.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TORPEDO CALIFORNICA; SOURCE 3 ORGANISM_COMMON: PACIFIC ELECTRIC RAY; SOURCE 4 ORGANISM_TAXID: 7787; SOURCE 5 GENE: FSCCKPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS CREATINE KINASE, TRANSITION-STATE ANALOGUE COMPLEX, GUANIDINO KEYWDS 2 KINASES, PHOSPHOCREATINE, ARGININE KINASES, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.D.LAHIRI,P.F.WANG,P.C.BABBITT,M.J.MCLEISH,G.L.KENYON,K.N.ALLEN REVDAT 3 23-AUG-23 1VRP 1 REMARK LINK REVDAT 2 24-FEB-09 1VRP 1 VERSN REVDAT 1 03-MAY-05 1VRP 0 SPRSDE 03-MAY-05 1VRP 1N16 JRNL AUTH S.D.LAHIRI,P.F.WANG,P.C.BABBITT,M.J.MCLEISH,G.L.KENYON, JRNL AUTH 2 K.N.ALLEN JRNL TITL THE 2.1 A STRUCTURE OF TORPEDO CALIFORNICA CREATINE KINASE JRNL TITL 2 COMPLEXED WITH THE ADP-MG(2+)-NO3(-)-CREATINE JRNL TITL 3 TRANSITION-STATE ANALOGUE COMPLEX JRNL REF BIOCHEMISTRY V. 41 13861 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 12437342 JRNL DOI 10.1021/BI026655P REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 42682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4303 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 151 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.27000 REMARK 3 B22 (A**2) : -3.25000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.27 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.130 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.545 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.877 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.024 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.260 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 49.28 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ADP.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CRT.PAR REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED WEIGHTED FULL MATRIX LEAST SQUARES REMARK 3 PROCEDURE REMARK 4 REMARK 4 1VRP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000002093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 108 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900 REMARK 200 MONOCHROMATOR : BENT GE(111) MONOCHROMATOR REMARK 200 OPTICS : BENT CONICAL SI-MIRROR (RH REMARK 200 COATING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42682 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : 0.21000 REMARK 200 FOR SHELL : 10.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1QH4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M NICKEL, CHLORIDE HEXAHYDRATE, REMARK 280 0.1 M TRIS, PH 8.0, AND 16% W/V PEG 2000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.31700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.79800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.59450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.79800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.31700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.59450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 PHE A 3 REMARK 465 GLY A 4 REMARK 465 ASN A 5 REMARK 465 THR A 6 REMARK 465 HIS A 7 REMARK 465 ASN A 8 REMARK 465 LYS A 9 REMARK 465 TRP A 10 REMARK 465 LYS A 11 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 PHE B 3 REMARK 465 GLY B 4 REMARK 465 ASN B 5 REMARK 465 THR B 6 REMARK 465 HIS B 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 HIS A 191 O VAL A 325 1.51 REMARK 500 O HOH B 479 O HOH B 484 2.12 REMARK 500 O HOH B 479 O HOH B 481 2.17 REMARK 500 O HIS A 66 O ILE A 69 2.18 REMARK 500 CG2 THR A 322 O HOH A 428 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 212 C - N - CD ANGL. DEV. = -14.3 DEGREES REMARK 500 GLY A 324 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 LEU A 342 CB - CG - CD1 ANGL. DEV. = -12.3 DEGREES REMARK 500 PRO A 378 C - N - CA ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP B 109 N - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 PRO B 123 C - N - CA ANGL. DEV. = 12.0 DEGREES REMARK 500 LEU B 287 CA - CB - CG ANGL. DEV. = 18.6 DEGREES REMARK 500 LEU B 287 CB - CG - CD2 ANGL. DEV. = -17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 28 141.47 -178.38 REMARK 500 HIS A 191 31.45 72.47 REMARK 500 ASP A 210 20.56 46.92 REMARK 500 GLU A 231 -90.37 -99.62 REMARK 500 THR A 322 83.25 -160.96 REMARK 500 VAL A 325 -0.85 -59.39 REMARK 500 ASP A 326 -50.32 -127.11 REMARK 500 ARG A 341 -76.51 -132.77 REMARK 500 MET A 377 99.83 -34.50 REMARK 500 ASN B 28 152.61 170.93 REMARK 500 LEU B 121 122.26 -37.27 REMARK 500 ASP B 122 107.94 -54.06 REMARK 500 PRO B 197 83.41 -64.61 REMARK 500 ASN B 230 65.95 64.06 REMARK 500 GLU B 231 -82.51 -118.29 REMARK 500 ASN B 245 59.21 -96.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 400 O2B REMARK 620 2 ADP A 400 O1B 51.8 REMARK 620 3 ADP A 400 O1A 89.2 68.6 REMARK 620 4 HOH A 459 O 152.1 103.0 67.8 REMARK 620 5 HOH A 461 O 124.1 170.7 104.2 78.7 REMARK 620 6 HOH A 462 O 101.5 49.9 59.6 53.7 132.3 REMARK 620 7 HOH A 463 O 75.7 94.1 162.0 123.2 92.4 113.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP B 401 O1B REMARK 620 2 ADP B 401 O1A 80.9 REMARK 620 3 NO3 B 405 O2 75.1 87.1 REMARK 620 4 HOH B 474 O 104.3 173.5 97.9 REMARK 620 5 HOH B 475 O 109.3 92.3 175.4 82.3 REMARK 620 6 HOH B 479 O 148.5 104.0 74.1 73.7 101.7 REMARK 620 7 HOH B 484 O 156.1 76.7 111.4 97.6 64.0 48.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOM B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QH4 RELATED DB: PDB REMARK 900 CHICKEN BRAIN CREATINE KINASE REMARK 900 RELATED ID: 1BG0 RELATED DB: PDB REMARK 900 TRANSITION STATE STRUCTURE OF ARGININE KINASE REMARK 900 RELATED ID: 2CRK RELATED DB: PDB REMARK 900 MUSCLE CREATINE KINASE REMARK 900 RELATED ID: 1G0W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOVINE RETINAL CREATINE KINASE DBREF 1VRP A 1 381 UNP P04414 KCRM_TORCA 1 381 DBREF 1VRP B 1 381 UNP P04414 KCRM_TORCA 1 381 SEQRES 1 A 381 MET PRO PHE GLY ASN THR HIS ASN LYS TRP LYS LEU ASN SEQRES 2 A 381 TYR SER ALA ALA GLU GLU PHE PRO ASP LEU SER LYS HIS SEQRES 3 A 381 ASN ASN HIS MET ALA LYS ALA LEU THR LEU ASP ILE TYR SEQRES 4 A 381 LYS LYS LEU ARG ASP LYS GLU THR PRO SER GLY PHE THR SEQRES 5 A 381 LEU ASP ASP ILE ILE GLN THR GLY VAL ASP ASN PRO GLY SEQRES 6 A 381 HIS PRO PHE ILE MET THR VAL GLY CYS VAL ALA GLY ASP SEQRES 7 A 381 GLU GLU CYS TYR GLU VAL PHE LYS ASP LEU PHE ASP PRO SEQRES 8 A 381 VAL ILE GLU ASP ARG HIS GLY GLY TYR LYS PRO THR ASP SEQRES 9 A 381 LYS HIS LYS THR ASP LEU ASN GLN GLU ASN LEU LYS GLY SEQRES 10 A 381 GLY ASP ASP LEU ASP PRO ASN TYR VAL LEU SER SER ARG SEQRES 11 A 381 VAL ARG THR GLY ARG SER ILE LYS GLY ILE ALA LEU PRO SEQRES 12 A 381 PRO HIS CYS SER ARG GLY GLU ARG ARG LEU VAL GLU LYS SEQRES 13 A 381 LEU CYS ILE ASP GLY LEU ALA THR LEU THR GLY GLU PHE SEQRES 14 A 381 GLN GLY LYS TYR TYR PRO LEU SER SER MET SER ASP ALA SEQRES 15 A 381 GLU GLN GLN GLN LEU ILE ASP ASP HIS PHE LEU PHE ASP SEQRES 16 A 381 LYS PRO ILE SER PRO LEU LEU LEU ALA SER GLY MET ALA SEQRES 17 A 381 ARG ASP TRP PRO ASP GLY ARG GLY ILE TRP HIS ASN ASN SEQRES 18 A 381 ASP LYS THR PHE LEU VAL TRP VAL ASN GLU GLU ASP HIS SEQRES 19 A 381 LEU ARG VAL ILE SER MET GLN LYS GLY GLY ASN MET LYS SEQRES 20 A 381 GLU VAL PHE ARG ARG PHE CYS VAL GLY LEU LYS LYS ILE SEQRES 21 A 381 GLU ASP ILE PHE VAL LYS ALA GLY ARG GLY PHE MET TRP SEQRES 22 A 381 ASN GLU HIS LEU GLY TYR VAL LEU THR CYS PRO SER ASN SEQRES 23 A 381 LEU GLY THR GLY LEU ARG GLY GLY VAL HIS VAL LYS ILE SEQRES 24 A 381 PRO HIS LEU CYS LYS HIS GLU LYS PHE SER GLU VAL LEU SEQRES 25 A 381 LYS ARG THR ARG LEU GLN LYS ARG GLY THR GLY GLY VAL SEQRES 26 A 381 ASP THR ALA ALA VAL GLY SER ILE TYR ASP ILE SER ASN SEQRES 27 A 381 ALA ASP ARG LEU GLY PHE SER GLU VAL GLU GLN VAL GLN SEQRES 28 A 381 MET VAL VAL ASP GLY VAL LYS LEU MET VAL GLU MET GLU SEQRES 29 A 381 LYS ARG LEU GLU ASN GLY LYS SER ILE ASP ASP LEU MET SEQRES 30 A 381 PRO ALA GLN LYS SEQRES 1 B 381 MET PRO PHE GLY ASN THR HIS ASN LYS TRP LYS LEU ASN SEQRES 2 B 381 TYR SER ALA ALA GLU GLU PHE PRO ASP LEU SER LYS HIS SEQRES 3 B 381 ASN ASN HIS MET ALA LYS ALA LEU THR LEU ASP ILE TYR SEQRES 4 B 381 LYS LYS LEU ARG ASP LYS GLU THR PRO SER GLY PHE THR SEQRES 5 B 381 LEU ASP ASP ILE ILE GLN THR GLY VAL ASP ASN PRO GLY SEQRES 6 B 381 HIS PRO PHE ILE MET THR VAL GLY CYS VAL ALA GLY ASP SEQRES 7 B 381 GLU GLU CYS TYR GLU VAL PHE LYS ASP LEU PHE ASP PRO SEQRES 8 B 381 VAL ILE GLU ASP ARG HIS GLY GLY TYR LYS PRO THR ASP SEQRES 9 B 381 LYS HIS LYS THR ASP LEU ASN GLN GLU ASN LEU LYS GLY SEQRES 10 B 381 GLY ASP ASP LEU ASP PRO ASN TYR VAL LEU SER SER ARG SEQRES 11 B 381 VAL ARG THR GLY ARG SER ILE LYS GLY ILE ALA LEU PRO SEQRES 12 B 381 PRO HIS CYS SER ARG GLY GLU ARG ARG LEU VAL GLU LYS SEQRES 13 B 381 LEU CYS ILE ASP GLY LEU ALA THR LEU THR GLY GLU PHE SEQRES 14 B 381 GLN GLY LYS TYR TYR PRO LEU SER SER MET SER ASP ALA SEQRES 15 B 381 GLU GLN GLN GLN LEU ILE ASP ASP HIS PHE LEU PHE ASP SEQRES 16 B 381 LYS PRO ILE SER PRO LEU LEU LEU ALA SER GLY MET ALA SEQRES 17 B 381 ARG ASP TRP PRO ASP GLY ARG GLY ILE TRP HIS ASN ASN SEQRES 18 B 381 ASP LYS THR PHE LEU VAL TRP VAL ASN GLU GLU ASP HIS SEQRES 19 B 381 LEU ARG VAL ILE SER MET GLN LYS GLY GLY ASN MET LYS SEQRES 20 B 381 GLU VAL PHE ARG ARG PHE CYS VAL GLY LEU LYS LYS ILE SEQRES 21 B 381 GLU ASP ILE PHE VAL LYS ALA GLY ARG GLY PHE MET TRP SEQRES 22 B 381 ASN GLU HIS LEU GLY TYR VAL LEU THR CYS PRO SER ASN SEQRES 23 B 381 LEU GLY THR GLY LEU ARG GLY GLY VAL HIS VAL LYS ILE SEQRES 24 B 381 PRO HIS LEU CYS LYS HIS GLU LYS PHE SER GLU VAL LEU SEQRES 25 B 381 LYS ARG THR ARG LEU GLN LYS ARG GLY THR GLY GLY VAL SEQRES 26 B 381 ASP THR ALA ALA VAL GLY SER ILE TYR ASP ILE SER ASN SEQRES 27 B 381 ALA ASP ARG LEU GLY PHE SER GLU VAL GLU GLN VAL GLN SEQRES 28 B 381 MET VAL VAL ASP GLY VAL LYS LEU MET VAL GLU MET GLU SEQRES 29 B 381 LYS ARG LEU GLU ASN GLY LYS SER ILE ASP ASP LEU MET SEQRES 30 B 381 PRO ALA GLN LYS HET MG A 404 1 HET ADP A 400 27 HET MG B 403 1 HET NO3 B 405 4 HET ADP B 401 27 HET IOM B 402 9 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM NO3 NITRATE ION HETNAM IOM (DIAMINOMETHYL-METHYL-AMINO)-ACETIC ACID FORMUL 3 MG 2(MG 2+) FORMUL 4 ADP 2(C10 H15 N5 O10 P2) FORMUL 6 NO3 N O3 1- FORMUL 8 IOM C4 H11 N3 O2 FORMUL 9 HOH *151(H2 O) HELIX 1 1 SER A 15 PHE A 20 1 6 HELIX 2 2 ASN A 28 LEU A 34 1 7 HELIX 3 3 THR A 35 ARG A 43 1 9 HELIX 4 4 THR A 52 ASN A 63 1 12 HELIX 5 5 GLU A 80 PHE A 85 1 6 HELIX 6 6 PHE A 85 HIS A 97 1 13 HELIX 7 7 ASN A 111 LEU A 115 5 5 HELIX 8 8 SER A 147 ALA A 163 1 17 HELIX 9 9 THR A 164 LEU A 165 5 2 HELIX 10 10 THR A 166 PHE A 169 5 4 HELIX 11 11 SER A 177 MET A 179 5 3 HELIX 12 12 SER A 180 ASP A 190 1 11 HELIX 13 13 SER A 199 ALA A 204 1 6 HELIX 14 14 ASN A 245 ALA A 267 1 23 HELIX 15 15 CYS A 283 LEU A 287 5 5 HELIX 16 16 HIS A 301 HIS A 305 5 5 HELIX 17 17 LYS A 307 ARG A 316 1 10 HELIX 18 18 SER A 345 ASN A 369 1 25 HELIX 19 19 ILE A 373 MET A 377 5 5 HELIX 20 20 TRP B 10 TYR B 14 5 5 HELIX 21 21 SER B 15 PHE B 20 1 6 HELIX 22 22 ASN B 28 LEU B 34 1 7 HELIX 23 23 THR B 35 ARG B 43 1 9 HELIX 24 24 THR B 52 ASN B 63 1 12 HELIX 25 25 GLU B 80 PHE B 85 1 6 HELIX 26 26 PHE B 85 HIS B 97 1 13 HELIX 27 27 ASN B 111 LEU B 115 5 5 HELIX 28 28 SER B 147 ALA B 163 1 17 HELIX 29 29 THR B 164 LEU B 165 5 2 HELIX 30 30 THR B 166 PHE B 169 5 4 HELIX 31 31 SER B 177 MET B 179 5 3 HELIX 32 32 SER B 180 ASP B 190 1 11 HELIX 33 33 SER B 199 SER B 205 1 7 HELIX 34 34 ASN B 245 ALA B 267 1 23 HELIX 35 35 CYS B 283 LEU B 287 5 5 HELIX 36 36 HIS B 301 HIS B 305 5 5 HELIX 37 37 LYS B 307 ARG B 316 1 10 HELIX 38 38 SER B 345 ASN B 369 1 25 HELIX 39 39 ILE B 373 MET B 377 5 5 SHEET 1 A 8 GLY A 171 PRO A 175 0 SHEET 2 A 8 GLY A 216 ASN A 220 -1 O ILE A 217 N TYR A 174 SHEET 3 A 8 PHE A 225 VAL A 229 -1 O VAL A 227 N TRP A 218 SHEET 4 A 8 LEU A 235 LYS A 242 -1 O ILE A 238 N LEU A 226 SHEET 5 A 8 VAL A 126 ARG A 135 -1 N SER A 129 O GLN A 241 SHEET 6 A 8 ARG A 292 LYS A 298 -1 O GLY A 294 N ARG A 130 SHEET 7 A 8 ILE A 333 ASN A 338 -1 O TYR A 334 N VAL A 297 SHEET 8 A 8 LEU A 317 GLY A 321 -1 N GLN A 318 O SER A 337 SHEET 1 B 2 TRP A 273 ASN A 274 0 SHEET 2 B 2 GLY A 278 TYR A 279 -1 O GLY A 278 N ASN A 274 SHEET 1 C 8 GLY B 171 PRO B 175 0 SHEET 2 C 8 GLY B 216 ASN B 220 -1 O ILE B 217 N TYR B 174 SHEET 3 C 8 PHE B 225 VAL B 229 -1 O VAL B 227 N TRP B 218 SHEET 4 C 8 LEU B 235 LYS B 242 -1 O ILE B 238 N LEU B 226 SHEET 5 C 8 VAL B 126 ARG B 135 -1 N VAL B 131 O SER B 239 SHEET 6 C 8 ARG B 292 LYS B 298 -1 O GLY B 294 N ARG B 130 SHEET 7 C 8 ILE B 333 ASN B 338 -1 O TYR B 334 N VAL B 297 SHEET 8 C 8 LEU B 317 ARG B 320 -1 N GLN B 318 O SER B 337 SHEET 1 D 2 TRP B 273 ASN B 274 0 SHEET 2 D 2 GLY B 278 TYR B 279 -1 O GLY B 278 N ASN B 274 LINK O2B ADP A 400 MG MG A 404 1555 1555 2.68 LINK O1B ADP A 400 MG MG A 404 1555 1555 2.84 LINK O1A ADP A 400 MG MG A 404 1555 1555 2.48 LINK MG MG A 404 O HOH A 459 1555 1555 2.74 LINK MG MG A 404 O HOH A 461 1555 1555 2.67 LINK MG MG A 404 O HOH A 462 1555 1555 2.59 LINK MG MG A 404 O HOH A 463 1555 1555 3.04 LINK O1B ADP B 401 MG MG B 403 1555 1555 2.06 LINK O1A ADP B 401 MG MG B 403 1555 1555 2.28 LINK MG MG B 403 O2 NO3 B 405 1555 1555 2.66 LINK MG MG B 403 O HOH B 474 1555 1555 2.40 LINK MG MG B 403 O HOH B 475 1555 1555 2.39 LINK MG MG B 403 O HOH B 479 1555 1555 2.67 LINK MG MG B 403 O HOH B 484 1555 1555 2.53 CISPEP 1 TRP A 211 PRO A 212 0 -4.49 CISPEP 2 TRP B 211 PRO B 212 0 0.14 SITE 1 AC1 6 ADP B 401 NO3 B 405 HOH B 474 HOH B 475 SITE 2 AC1 6 HOH B 479 HOH B 484 SITE 1 AC2 6 GLU A 232 ADP A 400 HOH A 459 HOH A 461 SITE 2 AC2 6 HOH A 462 HOH A 463 SITE 1 AC3 8 GLU B 232 ARG B 236 ASN B 286 ARG B 320 SITE 2 AC3 8 ADP B 401 IOM B 402 MG B 403 HOH B 469 SITE 1 AC4 17 SER A 128 ARG A 130 ARG A 132 HIS A 191 SITE 2 AC4 17 TRP A 228 ARG A 292 GLY A 294 VAL A 295 SITE 3 AC4 17 HIS A 296 ARG A 320 THR A 322 ASP A 335 SITE 4 AC4 17 MG A 404 HOH A 446 HOH A 458 HOH A 459 SITE 5 AC4 17 HOH A 462 SITE 1 AC5 23 SER B 128 ARG B 130 ARG B 132 HIS B 191 SITE 2 AC5 23 TRP B 228 ARG B 236 ARG B 292 GLY B 294 SITE 3 AC5 23 VAL B 295 HIS B 296 ARG B 320 THR B 322 SITE 4 AC5 23 GLY B 323 GLY B 324 VAL B 325 ASP B 335 SITE 5 AC5 23 MG B 403 NO3 B 405 HOH B 424 HOH B 442 SITE 6 AC5 23 HOH B 460 HOH B 480 HOH B 484 SITE 1 AC6 11 ILE B 69 THR B 71 VAL B 72 LEU B 201 SITE 2 AC6 11 GLU B 232 CYS B 283 VAL B 325 NO3 B 405 SITE 3 AC6 11 HOH B 426 HOH B 462 HOH B 481 CRYST1 70.634 87.189 127.596 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014157 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011469 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007837 0.00000