HEADER    TRANSFERASE                             17-JUN-05   1VRV              
TITLE     STRUCTURE OF PHOSPHORYLATED IIB (C384(SEP)) DOMAIN OF THE MANNITOL-   
TITLE    2 SPECIFIC PERMEASE ENZYME II                                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: MANNITOL-SPECIFIC PTS SYSTEM ENZYME IIABC COMPONENTS;      
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: IIB DOMAIN;                                                
COMPND   5 SYNONYM: IIBMTL PHOSPHOTRANSFERASE ENZYME II, B COMPONENT, EIIB-MTL; 
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;                               
SOURCE   3 ORGANISM_TAXID: 83334;                                               
SOURCE   4 STRAIN: O157:H7;                                                     
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    PHOSPHOTRANSFERASE, TRANSFERASE, KINASE, SUGAR TRANSPORT              
EXPDTA    SOLUTION NMR                                                          
AUTHOR    J.Y.SUH,C.TANG,M.CAI,G.M.CLORE                                        
REVDAT   6   13-NOV-24 1VRV    1       REMARK                                   
REVDAT   5   27-DEC-23 1VRV    1       REMARK                                   
REVDAT   4   20-OCT-21 1VRV    1       REMARK SEQADV LINK                       
REVDAT   3   13-JUL-11 1VRV    1       VERSN                                    
REVDAT   2   24-FEB-09 1VRV    1       VERSN                                    
REVDAT   1   22-NOV-05 1VRV    0                                                
JRNL        AUTH   J.Y.SUH,C.TANG,M.CAI,G.M.CLORE                               
JRNL        TITL   VISUALIZATION OF THE PHOSPHORYLATED ACTIVE SITE LOOP OF THE  
JRNL        TITL 2 CYTOPLASMIC B DOMAIN OF THE MANNITOL TRANSPORTER             
JRNL        TITL 3 II(MANNITOL) OF THE ESCHERICHIA COLI PHOSPHOTRANSFERASE      
JRNL        TITL 4 SYSTEM BY NMR SPECTROSCOPY AND RESIDUAL DIPOLAR COUPLINGS.   
JRNL        REF    J.MOL.BIOL.                   V. 353  1129 2005              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   16219324                                                     
JRNL        DOI    10.1016/J.JMB.2005.09.033                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : X-PLOR NIH (HTTP://NMR.CIT.NIH.GOV/XPLOR_NIH)        
REMARK   3   AUTHORS     : SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE                
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS:                                           
REMARK   3  THE TARGET FUNCTION COMPRISES TERMS FOR THE NOE-DERIVED             
REMARK   3  INTERPROTON DISTANCE RESTRAINTS, TORSION ANGLE RESTRAINTS, AND      
REMARK   3  RESIDUAL DIPOLAR COUPLINGS (N-H, N-C' AND HN-C') IN THREE           
REMARK   3  ALIGNMENT MEDIA; A QUARTIC VAN DE WAALS REPULSION TERM, AND A       
REMARK   3  TORSION ANGLE DATABASE POTENTIAL OF MEAN FORCE.                     
REMARK   3                                                                      
REMARK   3                                                                      
REMARK   3                                                                      
REMARK   3  IN THIS ENTRY THE LAST COLUMN FOR                                   
REMARK   3  FOR THE ACTIVE SITE LOOP (RESIDUES 383-393)                         
REMARK   3  REPRESENTS THE AVERAGE RMS                                          
REMARK   3  DIFFERENCE BETWEEN THE INDIVIDUAL 150 SIMULATED ANNEALING           
REMARK   3  STRUCTURES AND THE MEAN COORDINATE POSITIONS.                       
REMARK   3  NOTE ONLY THE COORDINATES OF THE ACTIVE SITE LOOP                   
REMARK   3  (RESIDUES 383-393) HAVE BEEN REFINED; THE REMAINDER                 
REMARK   3  OF THE PROTEIN COORDINATES ARE HELD FIXED AT THEIR                  
REMARK   3  POSITIONS IN UNPHOSPHORYLATED IIBMTL (PDB ACCESSION                 
REMARK   3  CODE 1VKR). THE LAST COLUMN FOR RESIDUES OUTSIDE THE                
REMARK   3  ACTIVE SITE REPRESENTS THE AVERAGE RMS DIFFERENCE                   
REMARK   3  BETWEEN THE INDIVIDUAL 100 SIMULATED ANNEALING STRUCTURES           
REMARK   3  AND THE MEAN COORDINATE POSITIONS FOR THE STRUCTURE OF              
REMARK   3  THE PREVIOUSLY DETERMINED UNPHOSPHORYLATED STATE (PDB               
REMARK   3  ACCESSION CODE 1VKR).                                               
REMARK   3                                                                      
REMARK   3  EXPERIMENTAL RESTRAINTS INVOLVING THE PHOSPHORYLATED                
REMARK   3  ACTIVE SITE RESIDUES 383-394:                                       
REMARK   3   83 NOE-DERIVED INTERPROTON DISTANCE RESTRAINTS (8                  
REMARK   3      INTRARESIDUE, 17 SEQUENTIAL, 20 MEDIUM RANGE AND 38             
REMARK   3      LONG-RANGE INTERRESIDUE)                                        
REMARK   3   21 TORSION ANGLES (10 PHI, 9 PSI AND TWO CHI1)                     
REMARK   3   11 N-H, 11 N-C' AND 11 HN-C' RDCS IN PHAGE PF1                     
REMARK   3   11 N-H, 6 N-C' AND 6 HN-C' RDCS IN  NEUTRAL ANISOTROPIC            
REMARK   3      GEL                                                             
REMARK   3   10 N-H RDCS IN A POSITIVELY CHARGED ANISOTROPIC GEL                
REMARK   3   12 RESTRAINTS FOR 6 BACKBONE H-BONDS INVOLVING ONE                 
REMARK   3      ACTIVE SITE RESIDUE                                             
REMARK   3    2 RESTRAINTS FOR A PHOSPHORYL-NH(SER391) H-BOND                   
REMARK   3      DEMONSTRATED BY OBSERVATION OF A 3JNP COUPLING.                 
REMARK   3  THE TOTAL NUMBER OF RDCS MEASURED FOR THE WHOLE PROTEIN             
REMARK   3   WAS: 192 IN PHAGE PF1, 139 IN NEUTRAL GEL, AND 55 IN               
REMARK   3   POSITIVE GEL. EXCLUDING A FEW OUTLIERS INVOLVING ONLY              
REMARK   3   RESIDUES 386-391 WITHIN THE ACTIVE SITE, THE REMAINING             
REMARK   3   RDCS FIT THE STRUCTURE OF THE UNPHOSPHORYLATED STATE               
REMARK   3   (COORDINATES 1VKR) EXTREMELY WELL INDICATING THAT THE              
REMARK   3   ONLY BACKBONE CONFORMATIONAL CHANGES THAT OCCUR UPON               
REMARK   3   PHOSPHORYLATION ARE LOCALIZED SPECIFICALLY TO THE                  
REMARK   3   ACTIVE SITE (RESIDUES 383-393).  THEREFORE ONLY THE                
REMARK   3   COORDINATES OF THE ACTIVE SITE WERE REFINED WITH THE               
REMARK   3   COORDINATES OF THE REMAINDER OF THE PROTEIN                        
REMARK   3   FIXED TO THEIR POSITIONS IN 1VKR.                                  
REMARK   4                                                                      
REMARK   4 1VRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-05.                  
REMARK 100 THE DEPOSITION ID IS D_1000002097.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 303.00                             
REMARK 210  PH                             : 7.4                                
REMARK 210  IONIC STRENGTH                 : 0 EXCEPT FOR RDC MEASUREMENTS IN   
REMARK 210                                   PHAGE PF1 WHERE IT WAS 0.5M        
REMARK 210  PRESSURE                       : NULL                               
REMARK 210  SAMPLE CONTENTS                : NULL                               
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : (1) TRIPLE RESONANCE FOR           
REMARK 210                                   ASSIGNMENT OF PROTEIN; (2)         
REMARK 210                                   QUANTITATIVE J CORRELATION FOR     
REMARK 210                                   COUPLING CONSTANTS; (3) 3D         
REMARK 210                                   HETERONUCLEAR SEPARATED NOE        
REMARK 210                                   EXPTS; (4) IPAP AND COUPLED HSQC   
REMARK 210                                   EXPERIMENTS FOR DIPOLAR            
REMARK 210                                   COUPLINGS.                         
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ; 750 MHZ                   
REMARK 210  SPECTROMETER MODEL             : DMX600; DRX600; DMX650             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NULL                               
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 150                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 1                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : REGULARIZED MEAN STRUCTURE         
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL                
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                   
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                            
REMARK 465     RES C SSSEQI                                                     
REMARK 465     THR A   472                                                      
REMARK 465     GLU A   473                                                      
REMARK 465     ASN A   474                                                      
REMARK 465     GLU A   475                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   HD1  HIS A   430     H    ASP A   432              1.16            
REMARK 500   O1P  SEP A   384     H    SER A   391              1.52            
REMARK 500   O2P  SEP A   384     H    MET A   388              1.54            
REMARK 500   OG   SEP A   384     H    GLY A   387              1.60            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ARG A 378       -3.04   -143.23                                   
REMARK 500    ASP A 454       79.20    -62.04                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  1VRV A  375   475  UNP    P00550   PTM3C_ECOLI    375    475             
SEQADV 1VRV SEP A  384  UNP  P00550    CYS   384 ENGINEERED MUTATION            
SEQRES   1 A  101  SER HIS VAL ARG LYS ILE ILE VAL ALA SEP ASP ALA GLY          
SEQRES   2 A  101  MET GLY SER SER ALA MET GLY ALA GLY VAL LEU ARG LYS          
SEQRES   3 A  101  LYS ILE GLN ASP ALA GLY LEU SER GLN ILE SER VAL THR          
SEQRES   4 A  101  ASN SER ALA ILE ASN ASN LEU PRO PRO ASP VAL ASP LEU          
SEQRES   5 A  101  VAL ILE THR HIS ARG ASP LEU THR GLU ARG ALA MET ARG          
SEQRES   6 A  101  GLN VAL PRO GLN ALA GLN HIS ILE SER LEU THR ASN PHE          
SEQRES   7 A  101  LEU ASP SER GLY LEU TYR THR SER LEU THR GLU ARG LEU          
SEQRES   8 A  101  VAL ALA ALA GLN ARG HIS THR GLU ASN GLU                      
MODRES 1VRV SEP A  384  SER  PHOSPHOSERINE                                      
HET    SEP  A 384      14                                                       
HETNAM     SEP PHOSPHOSERINE                                                    
HETSYN     SEP PHOSPHONOSERINE                                                  
FORMUL   1  SEP    C3 H8 N O6 P                                                 
HELIX    1   1 GLY A  389  ALA A  405  1                                  17    
HELIX    2   2 ARG A  431  VAL A  441  1                                  11    
HELIX    3   3 ASP A  454  HIS A  471  1                                  18    
SHEET    1   A 4 SER A 411  ALA A 416  0                                        
SHEET    2   A 4 LYS A 379  SEP A 384  1  N  VAL A 382   O  SER A 415           
SHEET    3   A 4 LEU A 426  HIS A 430  1  O  ILE A 428   N  ILE A 381           
SHEET    4   A 4 GLN A 445  LEU A 449  1  O  GLN A 445   N  VAL A 427           
LINK         C   ALA A 383                 N   SEP A 384     1555   1555  1.33  
LINK         C   SEP A 384                 N   ASP A 385     1555   1555  1.33  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000