data_1VS2 # _entry.id 1VS2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VS2 pdb_00001vs2 10.2210/pdb1vs2/pdb NDB DDH010 ? ? RCSB RCSB003002 ? ? WWPDB D_1000003002 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-27 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-02-08 6 'Structure model' 1 5 2013-02-27 7 'Structure model' 1 6 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' 'Derived calculations' 9 6 'Structure model' Other 10 7 'Structure model' Advisory 11 7 'Structure model' 'Data collection' 12 7 'Structure model' 'Database references' 13 7 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 7 'Structure model' chem_comp_atom 2 7 'Structure model' chem_comp_bond 3 7 'Structure model' database_2 4 7 'Structure model' pdbx_validate_polymer_linkage 5 7 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 7 'Structure model' '_database_2.pdbx_DOI' 2 7 'Structure model' '_database_2.pdbx_database_accession' 3 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VS2 _pdbx_database_status.recvd_initial_deposition_date 1986-10-21 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 185D unspecified 'SOLUTION STRUCTURE OF D(GACGTC) COMPLEXED WITH TRIOSTIN A' PDB 193D unspecified 'SOLUTION STRUCTURE OF D(ACACGTGT) COMPLEXED WITH QUINOMYCIN UK-6305' PDB 1PFE unspecified 'CRYSTAL STRUCTURE OF D(GCGTACG) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P6322' PDB 1XVK unspecified 'CRYSTAL STRUCTURE OF D(GCGTACGC) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P632' PDB 1XVN unspecified 'CRYSTAL STRUCTURE OF D(ACGTACGT) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P632' PDB 1XVR unspecified 'CRYSTAL STRUCTURE OF D(CGTACG) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP C21' PDB 2ADW unspecified 'CRYSTAL STRUCTURE OF D(ACGTACGT) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P42212' PDB 2DA8 unspecified 'SOLUTION STRUCTURE OF D(GATATC) COMPLEXED WITH A MODIFIED TRIOSTIN A AT POSITIONS 4 AND 8' PDB 3GO3 unspecified 'CRYSTAL STRUCTURE OF D(ACGTACGT) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P41212' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, A.H.-J.' 1 'Ughetto, G.' 2 'Quigley, G.J.' 3 'Rich, A.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Interactions of Quinoxaline Antibiotic and DNA: The Molecular Structure of a Triostin A-D(Gcgtacgc) Complex.' J.Biomol.Struct.Dyn. 4 319 ? 1986 JBSDD6 US 0739-1102 0646 ? 3271447 ? 1 'Non-Watson-Crick G-C and A-T Base Pairs in a DNA-Antibiotic Complex' Science 232 1255 ? 1986 SCIEAS US 0036-8075 0038 ? ? 10.1126/SCIENCE.3704650 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, A.H.' 1 ? primary 'Ughetto, G.' 2 ? primary 'Quigley, G.J.' 3 ? primary 'Rich, A.' 4 ? 1 'Quigley, G.J.' 5 ? 1 'Ughetto, G.' 6 ? 1 'Van Der Marel, G.A.' 7 ? 1 'Van Boom, J.H.' 8 ? 1 'Wang, A.H.-J.' 9 ? 1 'Rich, A.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3'" 2427.605 1 ? ? ? ? 2 polymer nat 'TRIOSTIN A' 794.982 1 ? ? ? ? 3 non-polymer syn 2-CARBOXYQUINOXALINE 174.156 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DC)(DG)(DT)(DA)(DC)(DG)(DC)' GCGTACGC A ? 2 'polypeptide(L)' no yes '(DSN)A(NCY)(MVA)(DSN)A(NCY)(MVA)' SAXVSAXV B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 2-CARBOXYQUINOXALINE _pdbx_entity_nonpoly.comp_id QUI # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 DC n 1 7 DG n 1 8 DC n 2 1 DSN n 2 2 ALA n 2 3 NCY n 2 4 MVA n 2 5 DSN n 2 6 ALA n 2 7 NCY n 2 8 MVA n # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific STREPTOMYCINEAE _entity_src_nat.pdbx_ncbi_taxonomy_id 1931 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 NCY 'L-peptide linking' . N-METHYLCYSTEINE ? 'C4 H9 N O2 S' 135.185 QUI non-polymer . 2-CARBOXYQUINOXALINE ? 'C9 H6 N2 O2' 174.156 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DC 8 8 8 DC DC A . n B 2 1 DSN 1 1 1 DSN DSN B . n B 2 2 ALA 2 2 2 ALA ALA B . n B 2 3 NCY 3 3 3 NCY NCY B . n B 2 4 MVA 4 4 4 MVA MVA B . n B 2 5 DSN 5 5 5 DSN DSN B . n B 2 6 ALA 6 6 6 ALA ALA B . n B 2 7 NCY 7 7 7 NCY NCY B . n B 2 8 MVA 8 8 8 MVA MVA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 QUI 1 0 0 QUI QUI B . D 3 QUI 1 9 9 QUI QUI B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1VS2 _cell.length_a 40.900 _cell.length_b 40.900 _cell.length_c 80.700 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1VS2 _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1VS2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.84 _exptl_crystal.density_percent_sol 67.94 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PH 4.50, VAPOR DIFFUSION' # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA ACETATE' ? ? ? 1 4 1 NACL ? ? ? 1 5 1 MGCL2 ? ? ? 1 6 1 SPERMINE ? ? ? 1 7 2 WATER ? ? ? 1 8 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 285.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'NICOLET P3' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1VS2 _reflns.observed_criterion_sigma_I 1.500 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.000 _reflns.number_obs 1130 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1VS2 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 1130 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.200 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 52 _refine_hist.pdbx_number_atoms_nucleic_acid 161 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 237 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 10.00 # _database_PDB_matrix.entry_id 1VS2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VS2 _struct.title 'Interactions of quinoxaline antibiotic and DNA: the molecular structure of a TRIOSTIN A-D(GCGTACGC) complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VS2 _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC _struct_keywords.text 'BISINTERCALATOR, DESIPEPTIDE, QUINOXALINE, ANTIBIOTIC, ANTITUMOR, DNA-ANTIBIOTIC COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1VS2 1 ? ? 1VS2 ? 2 NOR NOR01129 2 ? ? NOR01129 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VS2 A 1 ? 8 ? 1VS2 1 ? 8 ? 1 8 2 2 1VS2 B 1 ? 8 ? NOR01129 1 ? 8 ? 1 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 790 ? 1 MORE -6.6 ? 1 'SSA (A^2)' 3900 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 9_555 -x,-x+y,-z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? B NCY 3 SG ? ? ? 1_555 B NCY 7 SG ? ? B NCY 3 B NCY 7 1_555 ? ? ? ? ? ? ? 1.980 ? ? covale1 covale both ? C QUI . C ? ? ? 1_555 B DSN 1 N ? ? B QUI 0 B DSN 1 1_555 ? ? ? ? ? ? ? 1.273 ? ? covale2 covale both ? B DSN 1 C ? ? ? 1_555 B ALA 2 N ? ? B DSN 1 B ALA 2 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale3 covale one ? B DSN 1 OG ? ? ? 1_555 B MVA 8 C ? ? B DSN 1 B MVA 8 1_555 ? ? ? ? ? ? ? 1.491 ? ? covale4 covale both ? B ALA 2 C ? ? ? 1_555 B NCY 3 N ? ? B ALA 2 B NCY 3 1_555 ? ? ? ? ? ? ? 1.403 ? ? covale5 covale both ? B NCY 3 C ? ? ? 1_555 B MVA 4 N ? ? B NCY 3 B MVA 4 1_555 ? ? ? ? ? ? ? 1.416 ? ? covale6 covale one ? B MVA 4 C ? ? ? 1_555 B DSN 5 OG ? ? B MVA 4 B DSN 5 1_555 ? ? ? ? ? ? ? 1.508 ? ? covale7 covale both ? B DSN 5 C ? ? ? 1_555 B ALA 6 N ? ? B DSN 5 B ALA 6 1_555 ? ? ? ? ? ? ? 1.423 ? ? covale8 covale both ? B DSN 5 N ? ? ? 1_555 D QUI . C ? ? B DSN 5 B QUI 9 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale9 covale both ? B ALA 6 C ? ? ? 1_555 B NCY 7 N ? ? B ALA 6 B NCY 7 1_555 ? ? ? ? ? ? ? 1.400 ? ? covale10 covale both ? B NCY 7 C ? ? ? 1_555 B MVA 8 N ? ? B NCY 7 B MVA 8 1_555 ? ? ? ? ? ? ? 1.418 ? ? hydrog1 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 9_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog2 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 7 N1 ? ? A DC 2 A DG 7 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 7 O6 ? ? A DC 2 A DG 7 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 7 N2 ? ? A DC 2 A DG 7 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 5 N7 ? ? A DT 4 A DA 5 9_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog9 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 4 A DA 5 9_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog10 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 5 A DT 4 9_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog11 hydrog ? ? A DA 5 N7 ? ? ? 1_555 A DT 4 N3 ? ? A DA 5 A DT 4 9_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog12 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 7 A DC 2 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 7 A DC 2 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 7 A DC 2 9_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 9_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR CHAIN B OF TRIOSTIN A' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DG A 1 ? DG A 1 . ? 1_555 ? 2 AC1 8 DC A 2 ? DC A 2 . ? 1_555 ? 3 AC1 8 DG A 3 ? DG A 3 . ? 1_555 ? 4 AC1 8 DT A 4 ? DT A 4 . ? 1_555 ? 5 AC1 8 DA A 5 ? DA A 5 . ? 1_555 ? 6 AC1 8 DC A 6 ? DC A 6 . ? 1_555 ? 7 AC1 8 DG A 7 ? DG A 7 . ? 1_555 ? 8 AC1 8 DC A 8 ? DC A 8 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? 1.467 1.516 -0.049 0.008 N 2 1 C6 A DG 1 ? ? N1 A DG 1 ? ? 1.334 1.391 -0.057 0.007 N 3 1 C2 A DG 1 ? ? N2 A DG 1 ? ? 1.238 1.341 -0.103 0.010 N 4 1 P A DC 2 ? ? "O5'" A DC 2 ? ? 1.663 1.593 0.070 0.010 N 5 1 P A DG 3 ? ? "O5'" A DG 3 ? ? 1.685 1.593 0.092 0.010 N 6 1 "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 1.592 1.529 0.063 0.010 N 7 1 "C2'" A DG 3 ? ? "C1'" A DG 3 ? ? 1.596 1.519 0.077 0.010 N 8 1 C6 A DG 3 ? ? N1 A DG 3 ? ? 1.331 1.391 -0.060 0.007 N 9 1 C2 A DG 3 ? ? N2 A DG 3 ? ? 1.237 1.341 -0.104 0.010 N 10 1 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.621 1.496 0.125 0.006 N 11 1 P A DA 5 ? ? "O5'" A DA 5 ? ? 1.656 1.593 0.063 0.010 N 12 1 "C2'" A DA 5 ? ? "C1'" A DA 5 ? ? 1.579 1.519 0.060 0.010 N 13 1 "C2'" A DC 6 ? ? "C1'" A DC 6 ? ? 1.593 1.519 0.074 0.010 N 14 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? 1.499 1.420 0.079 0.011 N 15 1 C6 A DG 7 ? ? N1 A DG 7 ? ? 1.317 1.391 -0.074 0.007 N 16 1 C2 A DG 7 ? ? N2 A DG 7 ? ? 1.240 1.341 -0.101 0.010 N 17 1 CB B DSN 5 ? ? OG B DSN 5 ? ? 1.540 1.418 0.122 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A DG 1 ? ? "O4'" A DG 1 ? ? "C4'" A DG 1 ? ? 115.58 110.30 5.28 0.70 N 2 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.19 108.30 1.89 0.30 N 3 1 C6 A DG 1 ? ? N1 A DG 1 ? ? C2 A DG 1 ? ? 117.35 125.10 -7.75 0.60 N 4 1 N1 A DG 1 ? ? C2 A DG 1 ? ? N3 A DG 1 ? ? 129.48 123.90 5.58 0.60 N 5 1 C5 A DG 1 ? ? C6 A DG 1 ? ? N1 A DG 1 ? ? 118.91 111.50 7.41 0.50 N 6 1 C4 A DG 1 ? ? C5 A DG 1 ? ? N7 A DG 1 ? ? 113.41 110.80 2.61 0.40 N 7 1 N1 A DG 1 ? ? C2 A DG 1 ? ? N2 A DG 1 ? ? 121.76 116.20 5.56 0.90 N 8 1 N3 A DG 1 ? ? C2 A DG 1 ? ? N2 A DG 1 ? ? 108.75 119.90 -11.15 0.70 N 9 1 C5 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 120.45 128.60 -8.15 0.60 N 10 1 "O5'" A DC 2 ? ? P A DC 2 ? ? OP2 A DC 2 ? ? 94.18 105.70 -11.52 0.90 N 11 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 98.97 108.00 -9.03 0.70 N 12 1 C2 A DC 2 ? ? N3 A DC 2 ? ? C4 A DC 2 ? ? 124.55 119.90 4.65 0.50 N 13 1 N3 A DC 2 ? ? C4 A DC 2 ? ? C5 A DC 2 ? ? 117.48 121.90 -4.42 0.40 N 14 1 N3 A DC 2 ? ? C4 A DC 2 ? ? N4 A DC 2 ? ? 122.25 118.00 4.25 0.70 N 15 1 "C3'" A DC 2 ? ? "O3'" A DC 2 ? ? P A DG 3 ? ? 111.77 119.70 -7.93 1.20 Y 16 1 "O5'" A DG 3 ? ? P A DG 3 ? ? OP2 A DG 3 ? ? 99.71 105.70 -5.99 0.90 N 17 1 P A DG 3 ? ? "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? 106.18 120.90 -14.72 1.60 N 18 1 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 97.47 104.50 -7.03 0.40 N 19 1 "C1'" A DG 3 ? ? "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? 116.42 110.30 6.12 0.70 N 20 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? "C2'" A DG 3 ? ? 100.63 105.90 -5.27 0.80 N 21 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 120.91 108.30 12.61 0.30 N 22 1 C6 A DG 3 ? ? N1 A DG 3 ? ? C2 A DG 3 ? ? 119.30 125.10 -5.80 0.60 N 23 1 N1 A DG 3 ? ? C2 A DG 3 ? ? N3 A DG 3 ? ? 127.79 123.90 3.89 0.60 N 24 1 C5 A DG 3 ? ? C6 A DG 3 ? ? N1 A DG 3 ? ? 117.76 111.50 6.26 0.50 N 25 1 N3 A DG 3 ? ? C2 A DG 3 ? ? N2 A DG 3 ? ? 111.40 119.90 -8.50 0.70 N 26 1 C5 A DG 3 ? ? C6 A DG 3 ? ? O6 A DG 3 ? ? 120.89 128.60 -7.71 0.60 N 27 1 P A DT 4 ? ? "O5'" A DT 4 ? ? "C5'" A DT 4 ? ? 102.81 120.90 -18.09 1.60 N 28 1 C6 A DT 4 ? ? N1 A DT 4 ? ? C2 A DT 4 ? ? 118.21 121.30 -3.09 0.50 N 29 1 N1 A DT 4 ? ? C2 A DT 4 ? ? N3 A DT 4 ? ? 118.76 114.60 4.16 0.60 N 30 1 C2 A DT 4 ? ? N3 A DT 4 ? ? C4 A DT 4 ? ? 121.79 127.20 -5.41 0.60 N 31 1 N3 A DT 4 ? ? C4 A DT 4 ? ? C5 A DT 4 ? ? 122.33 115.20 7.13 0.60 N 32 1 C4 A DT 4 ? ? C5 A DT 4 ? ? C6 A DT 4 ? ? 109.70 118.00 -8.30 0.60 N 33 1 C5 A DT 4 ? ? C6 A DT 4 ? ? N1 A DT 4 ? ? 129.19 123.70 5.49 0.60 N 34 1 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 117.89 122.30 -4.41 0.60 N 35 1 N3 A DT 4 ? ? C4 A DT 4 ? ? O4 A DT 4 ? ? 114.67 119.90 -5.23 0.60 N 36 1 C4 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 123.55 119.00 4.55 0.60 N 37 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 126.74 122.90 3.84 0.60 N 38 1 "O5'" A DA 5 ? ? P A DA 5 ? ? OP1 A DA 5 ? ? 97.51 105.70 -8.19 0.90 N 39 1 P A DA 5 ? ? "O5'" A DA 5 ? ? "C5'" A DA 5 ? ? 108.78 120.90 -12.12 1.60 N 40 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 115.90 108.30 7.60 0.30 N 41 1 "C3'" A DA 5 ? ? "O3'" A DA 5 ? ? P A DC 6 ? ? 132.50 119.70 12.80 1.20 Y 42 1 "O5'" A DC 6 ? ? P A DC 6 ? ? OP1 A DC 6 ? ? 99.91 105.70 -5.79 0.90 N 43 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 115.02 108.30 6.72 0.30 N 44 1 C2 A DC 6 ? ? N3 A DC 6 ? ? C4 A DC 6 ? ? 125.18 119.90 5.28 0.50 N 45 1 N3 A DC 6 ? ? C4 A DC 6 ? ? C5 A DC 6 ? ? 116.72 121.90 -5.18 0.40 N 46 1 C5 A DC 6 ? ? C6 A DC 6 ? ? N1 A DC 6 ? ? 125.66 121.00 4.66 0.50 N 47 1 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 125.76 118.90 6.86 0.60 N 48 1 N3 A DC 6 ? ? C4 A DC 6 ? ? N4 A DC 6 ? ? 123.05 118.00 5.05 0.70 N 49 1 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DG 7 ? ? 136.14 119.70 16.44 1.20 Y 50 1 "O4'" A DG 7 ? ? "C4'" A DG 7 ? ? "C3'" A DG 7 ? ? 98.17 104.50 -6.33 0.40 N 51 1 "C1'" A DG 7 ? ? "O4'" A DG 7 ? ? "C4'" A DG 7 ? ? 98.54 110.10 -11.56 1.00 N 52 1 "C4'" A DG 7 ? ? "C3'" A DG 7 ? ? "C2'" A DG 7 ? ? 93.04 102.20 -9.16 0.70 N 53 1 N9 A DG 7 ? ? "C1'" A DG 7 ? ? "C2'" A DG 7 ? ? 126.57 114.30 12.27 1.40 N 54 1 C6 A DG 7 ? ? N1 A DG 7 ? ? C2 A DG 7 ? ? 120.31 125.10 -4.79 0.60 N 55 1 N1 A DG 7 ? ? C2 A DG 7 ? ? N3 A DG 7 ? ? 128.74 123.90 4.84 0.60 N 56 1 C2 A DG 7 ? ? N3 A DG 7 ? ? C4 A DG 7 ? ? 108.77 111.90 -3.13 0.50 N 57 1 C5 A DG 7 ? ? C6 A DG 7 ? ? N1 A DG 7 ? ? 116.90 111.50 5.40 0.50 N 58 1 N1 A DG 7 ? ? C2 A DG 7 ? ? N2 A DG 7 ? ? 122.73 116.20 6.53 0.90 N 59 1 N3 A DG 7 ? ? C2 A DG 7 ? ? N2 A DG 7 ? ? 108.53 119.90 -11.37 0.70 N 60 1 C5 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 122.43 128.60 -6.17 0.60 N 61 1 "C3'" A DG 7 ? ? "O3'" A DG 7 ? ? P A DC 8 ? ? 134.82 119.70 15.12 1.20 Y 62 1 P A DC 8 ? ? "O5'" A DC 8 ? ? "C5'" A DC 8 ? ? 103.72 120.90 -17.18 1.60 N 63 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? "C2'" A DC 8 ? ? 100.38 105.90 -5.52 0.80 N 64 1 C2 A DC 8 ? ? N3 A DC 8 ? ? C4 A DC 8 ? ? 124.56 119.90 4.66 0.50 N 65 1 N3 A DC 8 ? ? C4 A DC 8 ? ? C5 A DC 8 ? ? 117.74 121.90 -4.16 0.40 N 66 1 C5 A DC 8 ? ? C6 A DC 8 ? ? N1 A DC 8 ? ? 124.80 121.00 3.80 0.50 N 67 1 N1 A DC 8 ? ? C2 A DC 8 ? ? O2 A DC 8 ? ? 126.52 118.90 7.62 0.60 N 68 1 N3 A DC 8 ? ? C2 A DC 8 ? ? O2 A DC 8 ? ? 116.99 121.90 -4.91 0.70 N 69 1 C5 A DC 8 ? ? C4 A DC 8 ? ? N4 A DC 8 ? ? 125.38 120.20 5.18 0.70 N 70 1 CB B DSN 1 ? ? CA B DSN 1 ? ? C B DSN 1 ? ? 125.58 110.10 15.48 1.90 N 71 1 N B DSN 1 ? ? CA B DSN 1 ? ? CB B DSN 1 ? ? 100.19 110.50 -10.31 1.50 N 72 1 N B ALA 2 ? ? CA B ALA 2 ? ? CB B ALA 2 ? ? 118.54 110.10 8.44 1.40 N 73 1 O B ALA 2 ? ? C B ALA 2 ? ? N B NCY 3 ? ? 139.06 122.70 16.36 1.60 Y 74 1 CB B ALA 6 ? ? CA B ALA 6 ? ? C B ALA 6 ? ? 100.25 110.10 -9.85 1.50 N # _pdbx_molecule_features.prd_id PRD_000488 _pdbx_molecule_features.name 'TRIOSTIN A' _pdbx_molecule_features.type 'Cyclic depsipeptide' _pdbx_molecule_features.class Anticancer _pdbx_molecule_features.details ;TRIOSTIN IS A BICYCLIC OCTADEPSIPEPTIDE. BICYCLIZATION IS ACHIEVED BY LINKING THE N- AND THE C- TERMINI, AND A DISULPHIDE BOND BETWEEN RESIDUES 3 AND 7. THE TWO QUINOXALINE CHROMOPHORES ARE LINKED TO THE D-SERINE RESIDUES, RESIDUES 1 AND 5. ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000488 B 1 PRD_000488 C 1 PRD_000488 D # _struct_site_keywords.site_id 1 _struct_site_keywords.text BIS-INTERCALATION # _refine_B_iso.class 'ALL ATOMS' _refine_B_iso.details TR _refine_B_iso.treatment isotropic _refine_B_iso.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_occupancy.class 'ALL ATOMS' _refine_occupancy.treatment fix _refine_occupancy.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_entry_details.entry_id 1VS2 _pdbx_entry_details.compound_details ;TRIOSTIN IS A BICYCLIC OCTADEPSIPEPTIDE, A MEMBER OF THE QUINOXALINE CLASS OF ANTIBIOTICS. HERE, TRIOSTIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) AND THE TWO LIGANDS (HET) QUI ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 DA OP3 O N N 14 DA P P N N 15 DA OP1 O N N 16 DA OP2 O N N 17 DA "O5'" O N N 18 DA "C5'" C N N 19 DA "C4'" C N R 20 DA "O4'" O N N 21 DA "C3'" C N S 22 DA "O3'" O N N 23 DA "C2'" C N N 24 DA "C1'" C N R 25 DA N9 N Y N 26 DA C8 C Y N 27 DA N7 N Y N 28 DA C5 C Y N 29 DA C6 C Y N 30 DA N6 N N N 31 DA N1 N Y N 32 DA C2 C Y N 33 DA N3 N Y N 34 DA C4 C Y N 35 DA HOP3 H N N 36 DA HOP2 H N N 37 DA "H5'" H N N 38 DA "H5''" H N N 39 DA "H4'" H N N 40 DA "H3'" H N N 41 DA "HO3'" H N N 42 DA "H2'" H N N 43 DA "H2''" H N N 44 DA "H1'" H N N 45 DA H8 H N N 46 DA H61 H N N 47 DA H62 H N N 48 DA H2 H N N 49 DC OP3 O N N 50 DC P P N N 51 DC OP1 O N N 52 DC OP2 O N N 53 DC "O5'" O N N 54 DC "C5'" C N N 55 DC "C4'" C N R 56 DC "O4'" O N N 57 DC "C3'" C N S 58 DC "O3'" O N N 59 DC "C2'" C N N 60 DC "C1'" C N R 61 DC N1 N N N 62 DC C2 C N N 63 DC O2 O N N 64 DC N3 N N N 65 DC C4 C N N 66 DC N4 N N N 67 DC C5 C N N 68 DC C6 C N N 69 DC HOP3 H N N 70 DC HOP2 H N N 71 DC "H5'" H N N 72 DC "H5''" H N N 73 DC "H4'" H N N 74 DC "H3'" H N N 75 DC "HO3'" H N N 76 DC "H2'" H N N 77 DC "H2''" H N N 78 DC "H1'" H N N 79 DC H41 H N N 80 DC H42 H N N 81 DC H5 H N N 82 DC H6 H N N 83 DG OP3 O N N 84 DG P P N N 85 DG OP1 O N N 86 DG OP2 O N N 87 DG "O5'" O N N 88 DG "C5'" C N N 89 DG "C4'" C N R 90 DG "O4'" O N N 91 DG "C3'" C N S 92 DG "O3'" O N N 93 DG "C2'" C N N 94 DG "C1'" C N R 95 DG N9 N Y N 96 DG C8 C Y N 97 DG N7 N Y N 98 DG C5 C Y N 99 DG C6 C N N 100 DG O6 O N N 101 DG N1 N N N 102 DG C2 C N N 103 DG N2 N N N 104 DG N3 N N N 105 DG C4 C Y N 106 DG HOP3 H N N 107 DG HOP2 H N N 108 DG "H5'" H N N 109 DG "H5''" H N N 110 DG "H4'" H N N 111 DG "H3'" H N N 112 DG "HO3'" H N N 113 DG "H2'" H N N 114 DG "H2''" H N N 115 DG "H1'" H N N 116 DG H8 H N N 117 DG H1 H N N 118 DG H21 H N N 119 DG H22 H N N 120 DSN N N N N 121 DSN CA C N R 122 DSN C C N N 123 DSN O O N N 124 DSN OXT O N N 125 DSN CB C N N 126 DSN OG O N N 127 DSN H H N N 128 DSN H2 H N N 129 DSN HA H N N 130 DSN HXT H N N 131 DSN HB2 H N N 132 DSN HB3 H N N 133 DSN HG H N N 134 DT OP3 O N N 135 DT P P N N 136 DT OP1 O N N 137 DT OP2 O N N 138 DT "O5'" O N N 139 DT "C5'" C N N 140 DT "C4'" C N R 141 DT "O4'" O N N 142 DT "C3'" C N S 143 DT "O3'" O N N 144 DT "C2'" C N N 145 DT "C1'" C N R 146 DT N1 N N N 147 DT C2 C N N 148 DT O2 O N N 149 DT N3 N N N 150 DT C4 C N N 151 DT O4 O N N 152 DT C5 C N N 153 DT C7 C N N 154 DT C6 C N N 155 DT HOP3 H N N 156 DT HOP2 H N N 157 DT "H5'" H N N 158 DT "H5''" H N N 159 DT "H4'" H N N 160 DT "H3'" H N N 161 DT "HO3'" H N N 162 DT "H2'" H N N 163 DT "H2''" H N N 164 DT "H1'" H N N 165 DT H3 H N N 166 DT H71 H N N 167 DT H72 H N N 168 DT H73 H N N 169 DT H6 H N N 170 MVA N N N N 171 MVA CN C N N 172 MVA CA C N S 173 MVA CB C N N 174 MVA CG1 C N N 175 MVA CG2 C N N 176 MVA C C N N 177 MVA O O N N 178 MVA OXT O N N 179 MVA H H N N 180 MVA HN1 H N N 181 MVA HN2 H N N 182 MVA HN3 H N N 183 MVA HA H N N 184 MVA HB H N N 185 MVA HG11 H N N 186 MVA HG12 H N N 187 MVA HG13 H N N 188 MVA HG21 H N N 189 MVA HG22 H N N 190 MVA HG23 H N N 191 MVA HXT H N N 192 NCY N N N N 193 NCY CA C N R 194 NCY CB C N N 195 NCY SG S N N 196 NCY CN C N N 197 NCY C C N N 198 NCY O O N N 199 NCY OXT O N N 200 NCY H H N N 201 NCY HA H N N 202 NCY HB2 H N N 203 NCY HB3 H N N 204 NCY HG H N N 205 NCY HCN1 H N N 206 NCY HCN2 H N N 207 NCY HCN3 H N N 208 NCY HXT H N N 209 QUI N1 N Y N 210 QUI C2 C Y N 211 QUI C3 C Y N 212 QUI N4 N Y N 213 QUI C5 C Y N 214 QUI C6 C Y N 215 QUI C7 C Y N 216 QUI C8 C Y N 217 QUI C9 C Y N 218 QUI C10 C Y N 219 QUI C C N N 220 QUI O1 O N N 221 QUI O2 O N N 222 QUI H3 H N N 223 QUI H5 H N N 224 QUI H6 H N N 225 QUI H7 H N N 226 QUI H8 H N N 227 QUI HO2 H N N 228 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 DA OP3 P sing N N 13 DA OP3 HOP3 sing N N 14 DA P OP1 doub N N 15 DA P OP2 sing N N 16 DA P "O5'" sing N N 17 DA OP2 HOP2 sing N N 18 DA "O5'" "C5'" sing N N 19 DA "C5'" "C4'" sing N N 20 DA "C5'" "H5'" sing N N 21 DA "C5'" "H5''" sing N N 22 DA "C4'" "O4'" sing N N 23 DA "C4'" "C3'" sing N N 24 DA "C4'" "H4'" sing N N 25 DA "O4'" "C1'" sing N N 26 DA "C3'" "O3'" sing N N 27 DA "C3'" "C2'" sing N N 28 DA "C3'" "H3'" sing N N 29 DA "O3'" "HO3'" sing N N 30 DA "C2'" "C1'" sing N N 31 DA "C2'" "H2'" sing N N 32 DA "C2'" "H2''" sing N N 33 DA "C1'" N9 sing N N 34 DA "C1'" "H1'" sing N N 35 DA N9 C8 sing Y N 36 DA N9 C4 sing Y N 37 DA C8 N7 doub Y N 38 DA C8 H8 sing N N 39 DA N7 C5 sing Y N 40 DA C5 C6 sing Y N 41 DA C5 C4 doub Y N 42 DA C6 N6 sing N N 43 DA C6 N1 doub Y N 44 DA N6 H61 sing N N 45 DA N6 H62 sing N N 46 DA N1 C2 sing Y N 47 DA C2 N3 doub Y N 48 DA C2 H2 sing N N 49 DA N3 C4 sing Y N 50 DC OP3 P sing N N 51 DC OP3 HOP3 sing N N 52 DC P OP1 doub N N 53 DC P OP2 sing N N 54 DC P "O5'" sing N N 55 DC OP2 HOP2 sing N N 56 DC "O5'" "C5'" sing N N 57 DC "C5'" "C4'" sing N N 58 DC "C5'" "H5'" sing N N 59 DC "C5'" "H5''" sing N N 60 DC "C4'" "O4'" sing N N 61 DC "C4'" "C3'" sing N N 62 DC "C4'" "H4'" sing N N 63 DC "O4'" "C1'" sing N N 64 DC "C3'" "O3'" sing N N 65 DC "C3'" "C2'" sing N N 66 DC "C3'" "H3'" sing N N 67 DC "O3'" "HO3'" sing N N 68 DC "C2'" "C1'" sing N N 69 DC "C2'" "H2'" sing N N 70 DC "C2'" "H2''" sing N N 71 DC "C1'" N1 sing N N 72 DC "C1'" "H1'" sing N N 73 DC N1 C2 sing N N 74 DC N1 C6 sing N N 75 DC C2 O2 doub N N 76 DC C2 N3 sing N N 77 DC N3 C4 doub N N 78 DC C4 N4 sing N N 79 DC C4 C5 sing N N 80 DC N4 H41 sing N N 81 DC N4 H42 sing N N 82 DC C5 C6 doub N N 83 DC C5 H5 sing N N 84 DC C6 H6 sing N N 85 DG OP3 P sing N N 86 DG OP3 HOP3 sing N N 87 DG P OP1 doub N N 88 DG P OP2 sing N N 89 DG P "O5'" sing N N 90 DG OP2 HOP2 sing N N 91 DG "O5'" "C5'" sing N N 92 DG "C5'" "C4'" sing N N 93 DG "C5'" "H5'" sing N N 94 DG "C5'" "H5''" sing N N 95 DG "C4'" "O4'" sing N N 96 DG "C4'" "C3'" sing N N 97 DG "C4'" "H4'" sing N N 98 DG "O4'" "C1'" sing N N 99 DG "C3'" "O3'" sing N N 100 DG "C3'" "C2'" sing N N 101 DG "C3'" "H3'" sing N N 102 DG "O3'" "HO3'" sing N N 103 DG "C2'" "C1'" sing N N 104 DG "C2'" "H2'" sing N N 105 DG "C2'" "H2''" sing N N 106 DG "C1'" N9 sing N N 107 DG "C1'" "H1'" sing N N 108 DG N9 C8 sing Y N 109 DG N9 C4 sing Y N 110 DG C8 N7 doub Y N 111 DG C8 H8 sing N N 112 DG N7 C5 sing Y N 113 DG C5 C6 sing N N 114 DG C5 C4 doub Y N 115 DG C6 O6 doub N N 116 DG C6 N1 sing N N 117 DG N1 C2 sing N N 118 DG N1 H1 sing N N 119 DG C2 N2 sing N N 120 DG C2 N3 doub N N 121 DG N2 H21 sing N N 122 DG N2 H22 sing N N 123 DG N3 C4 sing N N 124 DSN N CA sing N N 125 DSN N H sing N N 126 DSN N H2 sing N N 127 DSN CA C sing N N 128 DSN CA CB sing N N 129 DSN CA HA sing N N 130 DSN C O doub N N 131 DSN C OXT sing N N 132 DSN OXT HXT sing N N 133 DSN CB OG sing N N 134 DSN CB HB2 sing N N 135 DSN CB HB3 sing N N 136 DSN OG HG sing N N 137 DT OP3 P sing N N 138 DT OP3 HOP3 sing N N 139 DT P OP1 doub N N 140 DT P OP2 sing N N 141 DT P "O5'" sing N N 142 DT OP2 HOP2 sing N N 143 DT "O5'" "C5'" sing N N 144 DT "C5'" "C4'" sing N N 145 DT "C5'" "H5'" sing N N 146 DT "C5'" "H5''" sing N N 147 DT "C4'" "O4'" sing N N 148 DT "C4'" "C3'" sing N N 149 DT "C4'" "H4'" sing N N 150 DT "O4'" "C1'" sing N N 151 DT "C3'" "O3'" sing N N 152 DT "C3'" "C2'" sing N N 153 DT "C3'" "H3'" sing N N 154 DT "O3'" "HO3'" sing N N 155 DT "C2'" "C1'" sing N N 156 DT "C2'" "H2'" sing N N 157 DT "C2'" "H2''" sing N N 158 DT "C1'" N1 sing N N 159 DT "C1'" "H1'" sing N N 160 DT N1 C2 sing N N 161 DT N1 C6 sing N N 162 DT C2 O2 doub N N 163 DT C2 N3 sing N N 164 DT N3 C4 sing N N 165 DT N3 H3 sing N N 166 DT C4 O4 doub N N 167 DT C4 C5 sing N N 168 DT C5 C7 sing N N 169 DT C5 C6 doub N N 170 DT C7 H71 sing N N 171 DT C7 H72 sing N N 172 DT C7 H73 sing N N 173 DT C6 H6 sing N N 174 MVA N CN sing N N 175 MVA N CA sing N N 176 MVA N H sing N N 177 MVA CN HN1 sing N N 178 MVA CN HN2 sing N N 179 MVA CN HN3 sing N N 180 MVA CA CB sing N N 181 MVA CA C sing N N 182 MVA CA HA sing N N 183 MVA CB CG1 sing N N 184 MVA CB CG2 sing N N 185 MVA CB HB sing N N 186 MVA CG1 HG11 sing N N 187 MVA CG1 HG12 sing N N 188 MVA CG1 HG13 sing N N 189 MVA CG2 HG21 sing N N 190 MVA CG2 HG22 sing N N 191 MVA CG2 HG23 sing N N 192 MVA C O doub N N 193 MVA C OXT sing N N 194 MVA OXT HXT sing N N 195 NCY N CA sing N N 196 NCY N CN sing N N 197 NCY N H sing N N 198 NCY CA CB sing N N 199 NCY CA C sing N N 200 NCY CA HA sing N N 201 NCY CB SG sing N N 202 NCY CB HB2 sing N N 203 NCY CB HB3 sing N N 204 NCY SG HG sing N N 205 NCY CN HCN1 sing N N 206 NCY CN HCN2 sing N N 207 NCY CN HCN3 sing N N 208 NCY C O doub N N 209 NCY C OXT sing N N 210 NCY OXT HXT sing N N 211 QUI N1 C2 doub Y N 212 QUI N1 C9 sing Y N 213 QUI C2 C3 sing Y N 214 QUI C2 C sing N N 215 QUI C3 N4 doub Y N 216 QUI C3 H3 sing N N 217 QUI N4 C10 sing Y N 218 QUI C5 C6 doub Y N 219 QUI C5 C10 sing Y N 220 QUI C5 H5 sing N N 221 QUI C6 C7 sing Y N 222 QUI C6 H6 sing N N 223 QUI C7 C8 doub Y N 224 QUI C7 H7 sing N N 225 QUI C8 C9 sing Y N 226 QUI C8 H8 sing N N 227 QUI C9 C10 doub Y N 228 QUI C O1 doub N N 229 QUI C O2 sing N N 230 QUI O2 HO2 sing N N 231 # _ndb_struct_conf_na.entry_id 1VS2 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 9_555 0.166 -3.186 -0.337 1.660 -5.202 63.416 1 A_DG1:DC8_A A 1 ? A 8 ? ? ? 1 A DC 2 1_555 A DG 7 9_555 0.136 -0.375 0.347 -12.700 -5.949 -1.084 2 A_DC2:DG7_A A 2 ? A 7 ? 19 1 1 A DG 3 1_555 A DC 6 9_555 0.104 -0.400 -0.135 8.076 -2.791 -6.603 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1 1 A DT 4 1_555 A DA 5 9_555 -0.377 3.294 -0.095 -1.594 7.371 -67.738 4 A_DT4:DA5_A A 4 ? A 5 ? 23 3 1 A DA 5 1_555 A DT 4 9_555 0.377 -3.294 0.095 1.594 -7.371 67.738 5 A_DA5:DT4_A A 5 ? A 4 ? 23 3 1 A DC 6 1_555 A DG 3 9_555 -0.104 -0.400 -0.135 -8.076 -2.791 -6.603 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1 1 A DG 7 1_555 A DC 2 9_555 -0.136 -0.375 0.347 12.700 -5.949 -1.084 7 A_DG7:DC2_A A 7 ? A 2 ? 19 1 1 A DC 8 1_555 A DG 1 9_555 -0.166 3.186 0.337 -1.660 5.202 -63.416 8 A_DC8:DG1_A A 8 ? A 1 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 9_555 A DC 2 1_555 A DG 7 9_555 3.260 6.355 -1.133 -148.509 93.777 -92.614 -2.923 2.036 -1.259 -47.211 -74.765 -176.988 1 AA_DG1DC2:DG7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A DC 2 1_555 A DG 7 9_555 A DG 3 1_555 A DC 6 9_555 -0.659 1.400 3.126 2.341 2.344 8.513 3.605 9.319 3.104 15.062 -15.043 9.134 2 AA_DC2DG3:DC6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 3 1_555 A DC 6 9_555 A DT 4 1_555 A DA 5 9_555 0.197 0.329 6.803 -8.784 4.411 55.944 -0.165 -1.226 6.712 4.662 9.284 56.733 3 AA_DG3DT4:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A DT 4 1_555 A DA 5 9_555 A DA 5 1_555 A DT 4 9_555 -3.147 5.147 0.000 154.480 -79.404 -180.000 -2.574 -1.573 0.000 39.702 77.240 -180.000 4 AA_DT4DA5:DT4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DA 5 1_555 A DT 4 9_555 A DC 6 1_555 A DG 3 9_555 3.166 6.022 -0.383 -150.290 79.817 -53.323 -2.936 1.746 -0.198 -41.177 -77.534 -171.218 5 AA_DA5DC6:DG3DT4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DC 6 1_555 A DG 3 9_555 A DG 7 1_555 A DC 2 9_555 0.659 1.400 3.126 -2.341 2.344 8.513 3.605 -9.319 3.104 15.062 15.043 9.134 6 AA_DC6DG7:DC2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DG 7 1_555 A DC 2 9_555 A DC 8 1_555 A DG 1 9_555 1.259 0.322 7.113 -3.013 3.153 64.541 0.013 -1.452 7.062 2.949 2.818 64.673 7 AA_DG7DC8:DG1DC2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _atom_sites.entry_id 1VS2 _atom_sites.fract_transf_matrix[1][1] 0.024450 _atom_sites.fract_transf_matrix[1][2] 0.014116 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028232 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012392 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_