data_1VSD # _entry.id 1VSD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1VSD WWPDB D_1000177110 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VSD _pdbx_database_status.recvd_initial_deposition_date 1995-11-29 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site ? _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bujacz, G.' 1 'Jaskolski, M.' 2 'Alexandratos, J.' 3 'Wlodawer, A.' 4 # _citation.id primary _citation.title ;The catalytic domain of avian sarcoma virus integrase: conformation of the active-site residues in the presence of divalent cations. ; _citation.journal_abbrev Structure _citation.journal_volume 4 _citation.page_first 89 _citation.page_last 96 _citation.year 1996 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8805516 _citation.pdbx_database_id_DOI '10.1016/S0969-2126(96)00012-3' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bujacz, G.' 1 primary 'Jaskolski, M.' 2 primary 'Alexandratos, J.' 3 primary 'Wlodawer, A.' 4 primary 'Merkel, G.' 5 primary 'Katz, R.A.' 6 primary 'Skalka, A.M.' 7 # _cell.entry_id 1VSD _cell.length_a 66.050 _cell.length_b 66.050 _cell.length_c 81.650 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1VSD _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man INTEGRASE 16767.285 1 ? ? 'CATALYTIC CORE DOMAIN, RESIDUES 1 - 4, 52 - 209' 'CRYSTALS SOAKED IN 500 MILLIMOLAR MGCL2' 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 238.305 1 ? ? ? ? 4 water nat water 18.015 173 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;PLREGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGS(OCY) FTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFNL ; _entity_poly.pdbx_seq_one_letter_code_can ;PLREGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSK STREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFNL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 LEU n 1 3 ARG n 1 4 GLU n 1 5 GLY n 1 6 LEU n 1 7 GLY n 1 8 PRO n 1 9 LEU n 1 10 GLN n 1 11 ILE n 1 12 TRP n 1 13 GLN n 1 14 THR n 1 15 ASP n 1 16 PHE n 1 17 THR n 1 18 LEU n 1 19 GLU n 1 20 PRO n 1 21 ARG n 1 22 MET n 1 23 ALA n 1 24 PRO n 1 25 ARG n 1 26 SER n 1 27 TRP n 1 28 LEU n 1 29 ALA n 1 30 VAL n 1 31 THR n 1 32 VAL n 1 33 ASP n 1 34 THR n 1 35 ALA n 1 36 SER n 1 37 SER n 1 38 ALA n 1 39 ILE n 1 40 VAL n 1 41 VAL n 1 42 THR n 1 43 GLN n 1 44 HIS n 1 45 GLY n 1 46 ARG n 1 47 VAL n 1 48 THR n 1 49 SER n 1 50 VAL n 1 51 ALA n 1 52 ALA n 1 53 GLN n 1 54 HIS n 1 55 HIS n 1 56 TRP n 1 57 ALA n 1 58 THR n 1 59 ALA n 1 60 ILE n 1 61 ALA n 1 62 VAL n 1 63 LEU n 1 64 GLY n 1 65 ARG n 1 66 PRO n 1 67 LYS n 1 68 ALA n 1 69 ILE n 1 70 LYS n 1 71 THR n 1 72 ASP n 1 73 ASN n 1 74 GLY n 1 75 SER n 1 76 OCY n 1 77 PHE n 1 78 THR n 1 79 SER n 1 80 LYS n 1 81 SER n 1 82 THR n 1 83 ARG n 1 84 GLU n 1 85 TRP n 1 86 LEU n 1 87 ALA n 1 88 ARG n 1 89 TRP n 1 90 GLY n 1 91 ILE n 1 92 ALA n 1 93 HIS n 1 94 THR n 1 95 THR n 1 96 GLY n 1 97 ILE n 1 98 PRO n 1 99 GLY n 1 100 ASN n 1 101 SER n 1 102 GLN n 1 103 GLY n 1 104 GLN n 1 105 ALA n 1 106 MET n 1 107 VAL n 1 108 GLU n 1 109 ARG n 1 110 ALA n 1 111 ASN n 1 112 ARG n 1 113 LEU n 1 114 LEU n 1 115 LYS n 1 116 ASP n 1 117 LYS n 1 118 ILE n 1 119 ARG n 1 120 VAL n 1 121 LEU n 1 122 ALA n 1 123 GLU n 1 124 GLY n 1 125 ASP n 1 126 GLY n 1 127 PHE n 1 128 MET n 1 129 LYS n 1 130 ARG n 1 131 ILE n 1 132 PRO n 1 133 THR n 1 134 SER n 1 135 LYS n 1 136 GLN n 1 137 GLY n 1 138 GLU n 1 139 LEU n 1 140 LEU n 1 141 ALA n 1 142 LYS n 1 143 ALA n 1 144 MET n 1 145 TYR n 1 146 ALA n 1 147 LEU n 1 148 ASN n 1 149 HIS n 1 150 PHE n 1 151 ASN n 1 152 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Alpharetrovirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Rous sarcoma virus' _entity_src_gen.gene_src_strain Schmidt-Ruppin _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rous sarcoma virus (strain Schmidt-Ruppin)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11889 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PRC23IN(52-207)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ;ORIGINAL VIRAL DNA CLONE\: JU ET AL., J. VIROL. 33:1026-1033 (1980), ORIGINAL EXPRESSION CLONE\: TERRY ET AL., J. VIROL. 62:2358-2365 (1988), EXPRESSION CLONE FOR CORE\: KULKOSKY ET AL., J. VIROL. 206:448-456 (1995) ; # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_RSVP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P03354 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;TVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAK LVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLV VGQVLEPLRLKHPSLCMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKVQREPGVQYLGYKLGSTYVAPVGL VAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVRLSTTAALERWDPALPL EGAVARCEQGAIGVLGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPACFREDLPLP EGILLALKGFAGKIRSSDTPSIFDIARPLHVSLKVRVTDHPVPGPTVFTDASSSTHKGVVVWREGPRWEIKEIADLGASV QQLEARAVAMALLLWPTTPTNVVTDSAFVAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEGN DVADSQATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLE PRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPG NSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRI ETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDEASPLFAGISDWIPWEDEQEGLQGETASN KQERPGEDTLAANES ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VSD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 150 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P03354 _struct_ref_seq.db_align_beg 616 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 771 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 50 _struct_ref_seq.pdbx_auth_seq_align_end 199 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VSD LEU A 2 ? UNP P03354 ALA 617 CONFLICT 51 1 1 1VSD ARG A 3 ? UNP P03354 LEU 618 CONFLICT 52 2 1 1VSD ? A ? ? UNP P03354 ALA 620 DELETION ? 3 1 1VSD ? A ? ? UNP P03354 GLY 621 DELETION ? 4 1 1VSD ? A ? ? UNP P03354 VAL 622 DELETION ? 5 1 1VSD ? A ? ? UNP P03354 ASN 623 DELETION ? 6 1 1VSD ? A ? ? UNP P03354 PRO 624 DELETION ? 7 1 1VSD ? A ? ? UNP P03354 ARG 625 DELETION ? 8 1 1VSD ALA A 52 ? UNP P03354 VAL 673 CONFLICT 101 9 1 1VSD LYS A 117 ? UNP P03354 ARG 738 CONFLICT 166 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EPE non-polymer . '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' HEPES 'C8 H18 N2 O4 S' 238.305 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 OCY 'L-peptide linking' n HYDROXYETHYLCYSTEINE ? 'C5 H11 N O3 S' 165.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1VSD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.66 _exptl_crystal.density_percent_sol 53.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;pH 7.5 THE PROTEIN WAS CRYSTALLIZED FROM 20% PEG 4000, 10% ISOPROPANOL, 100 MILLI-MOLAR HEPES PH 7.5. CRYSTALS WERE THEN SOAKED IN 500 MILLI-MOLAR MGCL2. ; # _diffrn.id 1 _diffrn.ambient_temp 295 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.pdbx_collection_date 1995-05-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1VSD _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high ? _reflns.number_obs 19297 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.064 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.88 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1VSD _refine.ls_number_reflns_obs 16330 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2. _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 91.6 _refine.ls_R_factor_obs 0.150 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.191 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 27.46 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;THE CLOSE (LESS THAN 2.5 ANGSTROMS) CONTACTS AT 146 ILE N - 148 ASN O (MAIN-MAIN) AND 149 ASN O - 151 GLN N (MAIN-MAIN) ARE LOCATED IN THE LEAST RELIABLE PART OF THE MODEL, A FLEXIBLE LOOP REGION. THE QUALITY OF THE ELECTRON DENSITY AND THE RELATIVELY HIGHER B-FACTORS IN THIS SHORT SECTION OF THE SEQUENCE RESULTED IN POORER FINAL REFINEMENT THAN FOR THE REST OF THIS STRUCTURE. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1127 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 173 _refine_hist.number_atoms_total 1316 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.013 0.020 ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.037 0.040 ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d 0.037 0.053 ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it 2.238 2.500 ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it 3.657 3.400 ? ? 'X-RAY DIFFRACTION' ? p_scbond_it 5.046 3.800 ? ? 'X-RAY DIFFRACTION' ? p_scangle_it 7.771 6.600 ? ? 'X-RAY DIFFRACTION' ? p_plane_restr 0.015 0.025 ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr 0.136 0.180 ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd 0.191 0.400 ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd 0.167 0.400 ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd 0.248 0.400 ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_tor 3.0 3.6 ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor 15.6 10.0 ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor 37.4 10.0 ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1VSD _struct.title 'ASV INTEGRASE CORE DOMAIN WITH MG(II) COFACTOR AND HEPES LIGAND, HIGH MG CONCENTRATION FORM' _struct.pdbx_descriptor 'INTEGRASE, HYDROXYETHYL GROUP, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VSD _struct_keywords.pdbx_keywords ENDORIBONUCLEASE _struct_keywords.text 'HYDROLASE, ENDONUCLEASE, ENDORIBONUCLEASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ;THIS FILE CONTAINS ONLY A MONOMER. IN ORDER TO CREATE THE SECOND SUBUNIT OF THE DIMERIC MOLECULE, THE FRACTIONAL CRYSTALLOGRAPHIC COORDINATES NEED TO BE TRANSFORMED BY Y, X, 1.0 - Z. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 20 ? MET A 22 ? PRO A 69 MET A 71 5 ? 3 HELX_P HELX_P2 2 SER A 49 ? LEU A 63 ? SER A 98 LEU A 112 1 ? 15 HELX_P HELX_P3 3 SER A 75 ? THR A 78 ? SER A 124 THR A 127 1 ? 4 HELX_P HELX_P4 4 LYS A 80 ? TRP A 89 ? LYS A 129 TRP A 138 1 ? 10 HELX_P HELX_P5 5 ALA A 105 ? ASP A 125 ? ALA A 154 ASP A 174 1 ? 21 HELX_P HELX_P6 6 THR A 133 ? ASN A 148 ? THR A 182 ASN A 197 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? B MG . MG ? ? ? 1_555 A ASP 72 OD2 ? ? A MG 250 A ASP 121 1_555 ? ? ? ? ? ? ? 2.117 ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 250 A HOH 262 1_555 ? ? ? ? ? ? ? 1.985 ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 250 A HOH 263 1_555 ? ? ? ? ? ? ? 2.137 ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 250 A HOH 264 1_555 ? ? ? ? ? ? ? 2.147 ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 250 A HOH 265 1_555 ? ? ? ? ? ? ? 2.133 ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 A ASP 15 OD1 ? ? A MG 250 A ASP 64 1_555 ? ? ? ? ? ? ? 2.146 ? covale1 covale ? ? A SER 75 C ? ? ? 1_555 A OCY 76 N ? ? A SER 124 A OCY 125 1_555 ? ? ? ? ? ? ? 1.342 ? covale2 covale ? ? A OCY 76 C ? ? ? 1_555 A PHE 77 N ? ? A OCY 125 A PHE 126 1_555 ? ? ? ? ? ? ? 1.320 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 23 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 72 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 24 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 73 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.18 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 39 ? HIS A 44 ? ILE A 88 HIS A 93 A 2 TRP A 27 ? ASP A 33 ? TRP A 76 ASP A 82 A 3 ILE A 11 ? LEU A 18 ? ILE A 60 LEU A 67 A 4 ALA A 68 ? LYS A 70 ? ALA A 117 LYS A 119 A 5 ALA A 92 ? THR A 94 ? ALA A 141 THR A 143 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 40 ? O VAL A 89 N THR A 31 ? N THR A 80 A 2 3 O LEU A 28 ? O LEU A 77 N THR A 17 ? N THR A 66 A 3 4 O TRP A 12 ? O TRP A 61 N ALA A 68 ? N ALA A 117 A 4 5 O ILE A 69 ? O ILE A 118 N ALA A 92 ? N ALA A 141 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG A 250' AC2 Software ? ? ? ? 15 'BINDING SITE FOR RESIDUE EPE A 261' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 15 ? ASP A 64 . ? 1_555 ? 2 AC1 6 ASP A 72 ? ASP A 121 . ? 1_555 ? 3 AC1 6 HOH D . ? HOH A 262 . ? 1_555 ? 4 AC1 6 HOH D . ? HOH A 263 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 264 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 265 . ? 1_555 ? 7 AC2 15 PRO A 24 ? PRO A 73 . ? 1_555 ? 8 AC2 15 SER A 26 ? SER A 75 . ? 1_555 ? 9 AC2 15 TRP A 27 ? TRP A 76 . ? 1_555 ? 10 AC2 15 GLY A 45 ? GLY A 94 . ? 1_555 ? 11 AC2 15 ARG A 46 ? ARG A 95 . ? 1_555 ? 12 AC2 15 VAL A 47 ? VAL A 96 . ? 1_555 ? 13 AC2 15 ARG A 88 ? ARG A 137 . ? 6_566 ? 14 AC2 15 TRP A 89 ? TRP A 138 . ? 6_566 ? 15 AC2 15 LYS A 117 ? LYS A 166 . ? 4_565 ? 16 AC2 15 LYS A 142 ? LYS A 191 . ? 4_565 ? 17 AC2 15 ALA A 146 ? ALA A 195 . ? 4_565 ? 18 AC2 15 HOH D . ? HOH A 287 . ? 4_565 ? 19 AC2 15 HOH D . ? HOH A 290 . ? 1_555 ? 20 AC2 15 HOH D . ? HOH A 297 . ? 6_566 ? 21 AC2 15 HOH D . ? HOH A 382 . ? 1_555 ? # _database_PDB_matrix.entry_id 1VSD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1VSD _atom_sites.fract_transf_matrix[1][1] 0.015140 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015140 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012247 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'CIS PROLINE - PRO 73' # loop_ _atom_type.symbol C MG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 50 ? ? ? A . n A 1 2 LEU 2 51 ? ? ? A . n A 1 3 ARG 3 52 ? ? ? A . n A 1 4 GLU 4 53 ? ? ? A . n A 1 5 GLY 5 54 54 GLY GLY A . n A 1 6 LEU 6 55 55 LEU LEU A . n A 1 7 GLY 7 56 56 GLY GLY A . n A 1 8 PRO 8 57 57 PRO PRO A . n A 1 9 LEU 9 58 58 LEU LEU A . n A 1 10 GLN 10 59 59 GLN GLN A . n A 1 11 ILE 11 60 60 ILE ILE A . n A 1 12 TRP 12 61 61 TRP TRP A . n A 1 13 GLN 13 62 62 GLN GLN A . n A 1 14 THR 14 63 63 THR THR A . n A 1 15 ASP 15 64 64 ASP ASP A . n A 1 16 PHE 16 65 65 PHE PHE A . n A 1 17 THR 17 66 66 THR THR A . n A 1 18 LEU 18 67 67 LEU LEU A . n A 1 19 GLU 19 68 68 GLU GLU A . n A 1 20 PRO 20 69 69 PRO PRO A . n A 1 21 ARG 21 70 70 ARG ARG A . n A 1 22 MET 22 71 71 MET MET A . n A 1 23 ALA 23 72 72 ALA ALA A . n A 1 24 PRO 24 73 73 PRO PRO A . n A 1 25 ARG 25 74 74 ARG ARG A . n A 1 26 SER 26 75 75 SER SER A . n A 1 27 TRP 27 76 76 TRP TRP A . n A 1 28 LEU 28 77 77 LEU LEU A . n A 1 29 ALA 29 78 78 ALA ALA A . n A 1 30 VAL 30 79 79 VAL VAL A . n A 1 31 THR 31 80 80 THR THR A . n A 1 32 VAL 32 81 81 VAL VAL A . n A 1 33 ASP 33 82 82 ASP ASP A . n A 1 34 THR 34 83 83 THR THR A . n A 1 35 ALA 35 84 84 ALA ALA A . n A 1 36 SER 36 85 85 SER SER A . n A 1 37 SER 37 86 86 SER SER A . n A 1 38 ALA 38 87 87 ALA ALA A . n A 1 39 ILE 39 88 88 ILE ILE A . n A 1 40 VAL 40 89 89 VAL VAL A . n A 1 41 VAL 41 90 90 VAL VAL A . n A 1 42 THR 42 91 91 THR THR A . n A 1 43 GLN 43 92 92 GLN GLN A . n A 1 44 HIS 44 93 93 HIS HIS A . n A 1 45 GLY 45 94 94 GLY GLY A . n A 1 46 ARG 46 95 95 ARG ARG A . n A 1 47 VAL 47 96 96 VAL VAL A . n A 1 48 THR 48 97 97 THR THR A . n A 1 49 SER 49 98 98 SER SER A . n A 1 50 VAL 50 99 99 VAL VAL A . n A 1 51 ALA 51 100 100 ALA ALA A . n A 1 52 ALA 52 101 101 ALA ALA A . n A 1 53 GLN 53 102 102 GLN GLN A . n A 1 54 HIS 54 103 103 HIS HIS A . n A 1 55 HIS 55 104 104 HIS HIS A . n A 1 56 TRP 56 105 105 TRP TRP A . n A 1 57 ALA 57 106 106 ALA ALA A . n A 1 58 THR 58 107 107 THR THR A . n A 1 59 ALA 59 108 108 ALA ALA A . n A 1 60 ILE 60 109 109 ILE ILE A . n A 1 61 ALA 61 110 110 ALA ALA A . n A 1 62 VAL 62 111 111 VAL VAL A . n A 1 63 LEU 63 112 112 LEU LEU A . n A 1 64 GLY 64 113 113 GLY GLY A . n A 1 65 ARG 65 114 114 ARG ARG A . n A 1 66 PRO 66 115 115 PRO PRO A . n A 1 67 LYS 67 116 116 LYS LYS A . n A 1 68 ALA 68 117 117 ALA ALA A . n A 1 69 ILE 69 118 118 ILE ILE A . n A 1 70 LYS 70 119 119 LYS LYS A . n A 1 71 THR 71 120 120 THR THR A . n A 1 72 ASP 72 121 121 ASP ASP A . n A 1 73 ASN 73 122 122 ASN ASN A . n A 1 74 GLY 74 123 123 GLY GLY A . n A 1 75 SER 75 124 124 SER SER A . n A 1 76 OCY 76 125 125 OCY OCY A . n A 1 77 PHE 77 126 126 PHE PHE A . n A 1 78 THR 78 127 127 THR THR A . n A 1 79 SER 79 128 128 SER SER A . n A 1 80 LYS 80 129 129 LYS LYS A . n A 1 81 SER 81 130 130 SER SER A . n A 1 82 THR 82 131 131 THR THR A . n A 1 83 ARG 83 132 132 ARG ARG A . n A 1 84 GLU 84 133 133 GLU GLU A . n A 1 85 TRP 85 134 134 TRP TRP A . n A 1 86 LEU 86 135 135 LEU LEU A . n A 1 87 ALA 87 136 136 ALA ALA A . n A 1 88 ARG 88 137 137 ARG ARG A . n A 1 89 TRP 89 138 138 TRP TRP A . n A 1 90 GLY 90 139 139 GLY GLY A . n A 1 91 ILE 91 140 140 ILE ILE A . n A 1 92 ALA 92 141 141 ALA ALA A . n A 1 93 HIS 93 142 142 HIS HIS A . n A 1 94 THR 94 143 143 THR THR A . n A 1 95 THR 95 144 144 THR THR A . n A 1 96 GLY 96 145 145 GLY GLY A . n A 1 97 ILE 97 146 146 ILE ILE A . n A 1 98 PRO 98 147 147 PRO PRO A . n A 1 99 GLY 99 148 148 GLY GLY A . n A 1 100 ASN 100 149 149 ASN ASN A . n A 1 101 SER 101 150 150 SER SER A . n A 1 102 GLN 102 151 151 GLN GLN A . n A 1 103 GLY 103 152 152 GLY GLY A . n A 1 104 GLN 104 153 153 GLN GLN A . n A 1 105 ALA 105 154 154 ALA ALA A . n A 1 106 MET 106 155 155 MET MET A . n A 1 107 VAL 107 156 156 VAL VAL A . n A 1 108 GLU 108 157 157 GLU GLU A . n A 1 109 ARG 109 158 158 ARG ARG A . n A 1 110 ALA 110 159 159 ALA ALA A . n A 1 111 ASN 111 160 160 ASN ASN A . n A 1 112 ARG 112 161 161 ARG ARG A . n A 1 113 LEU 113 162 162 LEU LEU A . n A 1 114 LEU 114 163 163 LEU LEU A . n A 1 115 LYS 115 164 164 LYS LYS A . n A 1 116 ASP 116 165 165 ASP ASP A . n A 1 117 LYS 117 166 166 LYS LYS A . n A 1 118 ILE 118 167 167 ILE ILE A . n A 1 119 ARG 119 168 168 ARG ARG A . n A 1 120 VAL 120 169 169 VAL VAL A . n A 1 121 LEU 121 170 170 LEU LEU A . n A 1 122 ALA 122 171 171 ALA ALA A . n A 1 123 GLU 123 172 172 GLU GLU A . n A 1 124 GLY 124 173 173 GLY GLY A . n A 1 125 ASP 125 174 174 ASP ASP A . n A 1 126 GLY 126 175 175 GLY GLY A . n A 1 127 PHE 127 176 176 PHE PHE A . n A 1 128 MET 128 177 177 MET MET A . n A 1 129 LYS 129 178 178 LYS LYS A . n A 1 130 ARG 130 179 179 ARG ARG A . n A 1 131 ILE 131 180 180 ILE ILE A . n A 1 132 PRO 132 181 181 PRO PRO A . n A 1 133 THR 133 182 182 THR THR A . n A 1 134 SER 134 183 183 SER SER A . n A 1 135 LYS 135 184 184 LYS LYS A . n A 1 136 GLN 136 185 185 GLN GLN A . n A 1 137 GLY 137 186 186 GLY GLY A . n A 1 138 GLU 138 187 187 GLU GLU A . n A 1 139 LEU 139 188 188 LEU LEU A . n A 1 140 LEU 140 189 189 LEU LEU A . n A 1 141 ALA 141 190 190 ALA ALA A . n A 1 142 LYS 142 191 191 LYS LYS A . n A 1 143 ALA 143 192 192 ALA ALA A . n A 1 144 MET 144 193 193 MET MET A . n A 1 145 TYR 145 194 194 TYR TYR A . n A 1 146 ALA 146 195 195 ALA ALA A . n A 1 147 LEU 147 196 196 LEU LEU A . n A 1 148 ASN 148 197 197 ASN ASN A . n A 1 149 HIS 149 198 198 HIS HIS A . n A 1 150 PHE 150 199 199 PHE PHE A . n A 1 151 ASN 151 200 ? ? ? A . n A 1 152 LEU 152 201 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 250 250 MG MG A . C 3 EPE 1 261 261 EPE EPE A . D 4 HOH 1 262 262 HOH HOH A . D 4 HOH 2 263 263 HOH HOH A . D 4 HOH 3 264 264 HOH HOH A . D 4 HOH 4 265 265 HOH HOH A . D 4 HOH 5 266 266 HOH HOH A . D 4 HOH 6 267 267 HOH HOH A . D 4 HOH 7 268 268 HOH HOH A . D 4 HOH 8 269 269 HOH HOH A . D 4 HOH 9 270 270 HOH HOH A . D 4 HOH 10 271 271 HOH HOH A . D 4 HOH 11 272 272 HOH HOH A . D 4 HOH 12 273 273 HOH HOH A . D 4 HOH 13 274 274 HOH HOH A . D 4 HOH 14 275 275 HOH HOH A . D 4 HOH 15 276 276 HOH HOH A . D 4 HOH 16 277 277 HOH HOH A . D 4 HOH 17 278 278 HOH HOH A . D 4 HOH 18 279 279 HOH HOH A . D 4 HOH 19 280 280 HOH HOH A . D 4 HOH 20 281 281 HOH HOH A . D 4 HOH 21 282 282 HOH HOH A . D 4 HOH 22 283 283 HOH HOH A . D 4 HOH 23 284 284 HOH HOH A . D 4 HOH 24 285 285 HOH HOH A . D 4 HOH 25 286 286 HOH HOH A . D 4 HOH 26 287 287 HOH HOH A . D 4 HOH 27 288 288 HOH HOH A . D 4 HOH 28 289 289 HOH HOH A . D 4 HOH 29 290 290 HOH HOH A . D 4 HOH 30 291 291 HOH HOH A . D 4 HOH 31 292 292 HOH HOH A . D 4 HOH 32 293 293 HOH HOH A . D 4 HOH 33 294 294 HOH HOH A . D 4 HOH 34 295 295 HOH HOH A . D 4 HOH 35 296 296 HOH HOH A . D 4 HOH 36 297 297 HOH HOH A . D 4 HOH 37 298 298 HOH HOH A . D 4 HOH 38 299 299 HOH HOH A . D 4 HOH 39 300 300 HOH HOH A . D 4 HOH 40 301 301 HOH HOH A . D 4 HOH 41 302 302 HOH HOH A . D 4 HOH 42 303 303 HOH HOH A . D 4 HOH 43 304 304 HOH HOH A . D 4 HOH 44 305 305 HOH HOH A . D 4 HOH 45 306 306 HOH HOH A . D 4 HOH 46 307 307 HOH HOH A . D 4 HOH 47 308 308 HOH HOH A . D 4 HOH 48 309 309 HOH HOH A . D 4 HOH 49 310 310 HOH HOH A . D 4 HOH 50 311 311 HOH HOH A . D 4 HOH 51 312 312 HOH HOH A . D 4 HOH 52 313 313 HOH HOH A . D 4 HOH 53 314 314 HOH HOH A . D 4 HOH 54 315 315 HOH HOH A . D 4 HOH 55 316 316 HOH HOH A . D 4 HOH 56 317 317 HOH HOH A . D 4 HOH 57 318 318 HOH HOH A . D 4 HOH 58 319 319 HOH HOH A . D 4 HOH 59 320 320 HOH HOH A . D 4 HOH 60 321 321 HOH HOH A . D 4 HOH 61 322 322 HOH HOH A . D 4 HOH 62 323 323 HOH HOH A . D 4 HOH 63 324 324 HOH HOH A . D 4 HOH 64 325 325 HOH HOH A . D 4 HOH 65 326 326 HOH HOH A . D 4 HOH 66 327 327 HOH HOH A . D 4 HOH 67 328 328 HOH HOH A . D 4 HOH 68 329 329 HOH HOH A . D 4 HOH 69 330 330 HOH HOH A . D 4 HOH 70 331 331 HOH HOH A . D 4 HOH 71 332 332 HOH HOH A . D 4 HOH 72 333 333 HOH HOH A . D 4 HOH 73 334 334 HOH HOH A . D 4 HOH 74 335 335 HOH HOH A . D 4 HOH 75 336 336 HOH HOH A . D 4 HOH 76 337 337 HOH HOH A . D 4 HOH 77 338 338 HOH HOH A . D 4 HOH 78 339 339 HOH HOH A . D 4 HOH 79 340 340 HOH HOH A . D 4 HOH 80 341 341 HOH HOH A . D 4 HOH 81 342 342 HOH HOH A . D 4 HOH 82 343 343 HOH HOH A . D 4 HOH 83 344 344 HOH HOH A . D 4 HOH 84 345 345 HOH HOH A . D 4 HOH 85 346 346 HOH HOH A . D 4 HOH 86 347 347 HOH HOH A . D 4 HOH 87 348 348 HOH HOH A . D 4 HOH 88 349 349 HOH HOH A . D 4 HOH 89 350 350 HOH HOH A . D 4 HOH 90 351 351 HOH HOH A . D 4 HOH 91 352 352 HOH HOH A . D 4 HOH 92 353 353 HOH HOH A . D 4 HOH 93 354 354 HOH HOH A . D 4 HOH 94 355 355 HOH HOH A . D 4 HOH 95 356 356 HOH HOH A . D 4 HOH 96 357 357 HOH HOH A . D 4 HOH 97 358 358 HOH HOH A . D 4 HOH 98 359 359 HOH HOH A . D 4 HOH 99 360 360 HOH HOH A . D 4 HOH 100 361 361 HOH HOH A . D 4 HOH 101 362 362 HOH HOH A . D 4 HOH 102 363 363 HOH HOH A . D 4 HOH 103 364 364 HOH HOH A . D 4 HOH 104 365 365 HOH HOH A . D 4 HOH 105 366 366 HOH HOH A . D 4 HOH 106 367 367 HOH HOH A . D 4 HOH 107 368 368 HOH HOH A . D 4 HOH 108 369 369 HOH HOH A . D 4 HOH 109 370 370 HOH HOH A . D 4 HOH 110 371 371 HOH HOH A . D 4 HOH 111 372 372 HOH HOH A . D 4 HOH 112 373 373 HOH HOH A . D 4 HOH 113 374 374 HOH HOH A . D 4 HOH 114 375 375 HOH HOH A . D 4 HOH 115 376 376 HOH HOH A . D 4 HOH 116 377 377 HOH HOH A . D 4 HOH 117 378 378 HOH HOH A . D 4 HOH 118 379 379 HOH HOH A . D 4 HOH 119 380 380 HOH HOH A . D 4 HOH 120 381 381 HOH HOH A . D 4 HOH 121 382 382 HOH HOH A . D 4 HOH 122 383 383 HOH HOH A . D 4 HOH 123 384 384 HOH HOH A . D 4 HOH 124 385 385 HOH HOH A . D 4 HOH 125 386 386 HOH HOH A . D 4 HOH 126 387 387 HOH HOH A . D 4 HOH 127 388 388 HOH HOH A . D 4 HOH 128 389 389 HOH HOH A . D 4 HOH 129 390 390 HOH HOH A . D 4 HOH 130 391 391 HOH HOH A . D 4 HOH 131 392 392 HOH HOH A . D 4 HOH 132 393 393 HOH HOH A . D 4 HOH 133 394 394 HOH HOH A . D 4 HOH 134 395 395 HOH HOH A . D 4 HOH 135 396 396 HOH HOH A . D 4 HOH 136 397 397 HOH HOH A . D 4 HOH 137 398 398 HOH HOH A . D 4 HOH 138 399 399 HOH HOH A . D 4 HOH 139 400 400 HOH HOH A . D 4 HOH 140 401 401 HOH HOH A . D 4 HOH 141 402 402 HOH HOH A . D 4 HOH 142 403 403 HOH HOH A . D 4 HOH 143 404 404 HOH HOH A . D 4 HOH 144 405 405 HOH HOH A . D 4 HOH 145 406 406 HOH HOH A . D 4 HOH 146 407 407 HOH HOH A . D 4 HOH 147 408 408 HOH HOH A . D 4 HOH 148 409 409 HOH HOH A . D 4 HOH 149 410 410 HOH HOH A . D 4 HOH 150 411 411 HOH HOH A . D 4 HOH 151 412 412 HOH HOH A . D 4 HOH 152 413 413 HOH HOH A . D 4 HOH 153 414 414 HOH HOH A . D 4 HOH 154 415 415 HOH HOH A . D 4 HOH 155 416 416 HOH HOH A . D 4 HOH 156 417 417 HOH HOH A . D 4 HOH 157 418 418 HOH HOH A . D 4 HOH 158 419 419 HOH HOH A . D 4 HOH 159 420 420 HOH HOH A . D 4 HOH 160 421 421 HOH HOH A . D 4 HOH 161 422 422 HOH HOH A . D 4 HOH 162 423 423 HOH HOH A . D 4 HOH 163 424 424 HOH HOH A . D 4 HOH 164 425 425 HOH HOH A . D 4 HOH 165 426 426 HOH HOH A . D 4 HOH 166 427 427 HOH HOH A . D 4 HOH 167 428 428 HOH HOH A . D 4 HOH 168 429 429 HOH HOH A . D 4 HOH 169 430 430 HOH HOH A . D 4 HOH 170 431 431 HOH HOH A . D 4 HOH 171 432 432 HOH HOH A . D 4 HOH 172 433 433 HOH HOH A . D 4 HOH 173 434 434 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id OCY _pdbx_struct_mod_residue.label_seq_id 76 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id OCY _pdbx_struct_mod_residue.auth_seq_id 125 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details HYDROXYETHYLCYSTEINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1930 ? 1 MORE -21.0 ? 1 'SSA (A^2)' 15120 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 81.6500000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 72 ? A ASP 121 ? 1_555 MG ? B MG . ? A MG 250 ? 1_555 O ? D HOH . ? A HOH 262 ? 1_555 86.4 ? 2 OD2 ? A ASP 72 ? A ASP 121 ? 1_555 MG ? B MG . ? A MG 250 ? 1_555 O ? D HOH . ? A HOH 263 ? 1_555 175.3 ? 3 O ? D HOH . ? A HOH 262 ? 1_555 MG ? B MG . ? A MG 250 ? 1_555 O ? D HOH . ? A HOH 263 ? 1_555 89.3 ? 4 OD2 ? A ASP 72 ? A ASP 121 ? 1_555 MG ? B MG . ? A MG 250 ? 1_555 O ? D HOH . ? A HOH 264 ? 1_555 87.4 ? 5 O ? D HOH . ? A HOH 262 ? 1_555 MG ? B MG . ? A MG 250 ? 1_555 O ? D HOH . ? A HOH 264 ? 1_555 94.5 ? 6 O ? D HOH . ? A HOH 263 ? 1_555 MG ? B MG . ? A MG 250 ? 1_555 O ? D HOH . ? A HOH 264 ? 1_555 91.2 ? 7 OD2 ? A ASP 72 ? A ASP 121 ? 1_555 MG ? B MG . ? A MG 250 ? 1_555 O ? D HOH . ? A HOH 265 ? 1_555 89.6 ? 8 O ? D HOH . ? A HOH 262 ? 1_555 MG ? B MG . ? A MG 250 ? 1_555 O ? D HOH . ? A HOH 265 ? 1_555 175.7 ? 9 O ? D HOH . ? A HOH 263 ? 1_555 MG ? B MG . ? A MG 250 ? 1_555 O ? D HOH . ? A HOH 265 ? 1_555 94.8 ? 10 O ? D HOH . ? A HOH 264 ? 1_555 MG ? B MG . ? A MG 250 ? 1_555 O ? D HOH . ? A HOH 265 ? 1_555 86.7 ? 11 OD2 ? A ASP 72 ? A ASP 121 ? 1_555 MG ? B MG . ? A MG 250 ? 1_555 OD1 ? A ASP 15 ? A ASP 64 ? 1_555 93.3 ? 12 O ? D HOH . ? A HOH 262 ? 1_555 MG ? B MG . ? A MG 250 ? 1_555 OD1 ? A ASP 15 ? A ASP 64 ? 1_555 93.0 ? 13 O ? D HOH . ? A HOH 263 ? 1_555 MG ? B MG . ? A MG 250 ? 1_555 OD1 ? A ASP 15 ? A ASP 64 ? 1_555 88.7 ? 14 O ? D HOH . ? A HOH 264 ? 1_555 MG ? B MG . ? A MG 250 ? 1_555 OD1 ? A ASP 15 ? A ASP 64 ? 1_555 172.5 ? 15 O ? D HOH . ? A HOH 265 ? 1_555 MG ? B MG . ? A MG 250 ? 1_555 OD1 ? A ASP 15 ? A ASP 64 ? 1_555 85.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-04-03 2 'Structure model' 1 1 2008-03-03 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PROLSQ refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _pdbx_entry_details.entry_id 1VSD _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE APPARENT DISCREPANCY BETWEEN THE SEQUENCE PRESENTED HERE AND THE "POL_RSVP" SEQUENCE IS A RESULT OF VIRAL STRAIN VARIATION. THE STRAIN USED FOR THIS WORK, "ROUS SARCOMA VIRUS SCHMIDT-RUPPIN B", COMPARED TO "POL-RSVP" SEQUENCE DIFFERS AT TWO POSITIONS WITH THE CONSERVATIVE AMINO ACID RESIDUE DIFFERENCES NOTED (VAL -> ALA 101 AND ARG -> LYS 166). ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 295 ? ? O A HOH 335 ? ? 2.09 2 1 O A HOH 405 ? ? O A HOH 425 ? ? 2.14 3 1 O A HOH 282 ? ? O A HOH 347 ? ? 2.16 4 1 O A HOH 316 ? ? O A HOH 371 ? ? 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 282 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 418 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 7_556 _pdbx_validate_symm_contact.dist 2.15 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 70 ? ? CZ A ARG 70 ? ? NH2 A ARG 70 ? ? 112.20 120.30 -8.10 0.50 N 2 1 CD A ARG 74 ? ? NE A ARG 74 ? ? CZ A ARG 74 ? ? 113.00 123.60 -10.60 1.40 N 3 1 NE A ARG 74 ? ? CZ A ARG 74 ? ? NH1 A ARG 74 ? ? 117.18 120.30 -3.12 0.50 N 4 1 CB A GLN 92 ? ? CA A GLN 92 ? ? C A GLN 92 ? ? 98.14 110.40 -12.26 2.00 N 5 1 NE A ARG 95 ? ? CZ A ARG 95 ? ? NH1 A ARG 95 ? ? 116.32 120.30 -3.98 0.50 N 6 1 NE A ARG 114 ? ? CZ A ARG 114 ? ? NH1 A ARG 114 ? ? 123.55 120.30 3.25 0.50 N 7 1 CB A ASP 121 ? ? CG A ASP 121 ? ? OD2 A ASP 121 ? ? 111.29 118.30 -7.01 0.90 N 8 1 CD A ARG 132 ? ? NE A ARG 132 ? ? CZ A ARG 132 ? ? 133.19 123.60 9.59 1.40 N 9 1 NE A ARG 132 ? ? CZ A ARG 132 ? ? NH1 A ARG 132 ? ? 125.91 120.30 5.61 0.50 N 10 1 NE A ARG 132 ? ? CZ A ARG 132 ? ? NH2 A ARG 132 ? ? 115.14 120.30 -5.16 0.50 N 11 1 NE A ARG 179 ? ? CZ A ARG 179 ? ? NH1 A ARG 179 ? ? 127.59 120.30 7.29 0.50 N 12 1 NE A ARG 179 ? ? CZ A ARG 179 ? ? NH2 A ARG 179 ? ? 109.43 120.30 -10.87 0.50 N 13 1 CB A TYR 194 ? ? CG A TYR 194 ? ? CD1 A TYR 194 ? ? 117.40 121.00 -3.60 0.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 147 ? ? -58.49 78.90 2 1 SER A 150 ? ? 64.56 -28.03 3 1 GLN A 153 ? ? -142.46 41.66 4 1 LYS A 178 ? ? -121.27 -123.73 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 50 ? A PRO 1 2 1 Y 1 A LEU 51 ? A LEU 2 3 1 Y 1 A ARG 52 ? A ARG 3 4 1 Y 1 A GLU 53 ? A GLU 4 5 1 Y 1 A ASN 200 ? A ASN 151 6 1 Y 1 A LEU 201 ? A LEU 152 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' EPE 4 water HOH #