data_1VTL # _entry.id 1VTL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VTL pdb_00001vtl 10.2210/pdb1vtl/pdb NDB PDT009 ? ? RCSB RCSB003044 ? ? WWPDB D_1000003044 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-13 2 'Structure model' 1 1 2021-02-03 3 'Structure model' 1 2 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' audit_author 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_audit_author.identifier_ORCID' 2 2 'Structure model' '_citation_author.identifier_ORCID' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VTL _pdbx_database_status.recvd_initial_deposition_date 1993-12-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kim, J.L.' 1 ? 'Nikolov, D.B.' 2 ? 'Burley, S.K.' 3 0000-0002-2487-9713 # _citation.id primary _citation.title 'Co-Crystal Structure of TBP Recognizing the Minor Groove of a TATA Element' _citation.journal_abbrev Nature _citation.journal_volume 365 _citation.page_first 520 _citation.page_last 527 _citation.year 1993 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8413605 _citation.pdbx_database_id_DOI 10.1038/365520a0 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kim, J.L.' 1 ? primary 'Nikolov, D.B.' 2 ? primary 'Burley, S.K.' 3 0000-0002-2487-9713 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3') ; 4337.855 2 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*C)-3') ; 4221.751 2 ? ? ? ? 3 polymer nat 'TATA BINDING PROTEIN (TBP)' 20914.773 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DC)(DT)(DA)(DT)(DA)(DA)(DA)(DA)(DG)(DG)(DG)(DC)(DA)' GCTATAAAAGGGCA A,C ? 2 polydeoxyribonucleotide no no '(DT)(DG)(DC)(DC)(DC)(DT)(DT)(DT)(DT)(DA)(DT)(DA)(DG)(DC)' TGCCCTTTTATAGC B,D ? 3 'polypeptide(L)' no no ;DLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKM AARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVI TGAKMRDETYKAFENIYPVLSEFRKI ; ;DLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKM AARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVI TGAKMRDETYKAFENIYPVLSEFRKI ; E,F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DT n 1 4 DA n 1 5 DT n 1 6 DA n 1 7 DA n 1 8 DA n 1 9 DA n 1 10 DG n 1 11 DG n 1 12 DG n 1 13 DC n 1 14 DA n 2 1 DT n 2 2 DG n 2 3 DC n 2 4 DC n 2 5 DC n 2 6 DT n 2 7 DT n 2 8 DT n 2 9 DT n 2 10 DA n 2 11 DT n 2 12 DA n 2 13 DG n 2 14 DC n 3 1 ASP n 3 2 LEU n 3 3 SER n 3 4 LYS n 3 5 HIS n 3 6 PRO n 3 7 SER n 3 8 GLY n 3 9 ILE n 3 10 VAL n 3 11 PRO n 3 12 THR n 3 13 LEU n 3 14 GLN n 3 15 ASN n 3 16 ILE n 3 17 VAL n 3 18 SER n 3 19 THR n 3 20 VAL n 3 21 ASN n 3 22 LEU n 3 23 ASP n 3 24 CYS n 3 25 LYS n 3 26 LEU n 3 27 ASP n 3 28 LEU n 3 29 LYS n 3 30 ALA n 3 31 ILE n 3 32 ALA n 3 33 LEU n 3 34 GLN n 3 35 ALA n 3 36 ARG n 3 37 ASN n 3 38 ALA n 3 39 GLU n 3 40 TYR n 3 41 ASN n 3 42 PRO n 3 43 LYS n 3 44 ARG n 3 45 PHE n 3 46 ALA n 3 47 ALA n 3 48 VAL n 3 49 ILE n 3 50 MET n 3 51 ARG n 3 52 ILE n 3 53 ARG n 3 54 GLU n 3 55 PRO n 3 56 LYS n 3 57 THR n 3 58 THR n 3 59 ALA n 3 60 LEU n 3 61 ILE n 3 62 PHE n 3 63 ALA n 3 64 SER n 3 65 GLY n 3 66 LYS n 3 67 MET n 3 68 VAL n 3 69 CYS n 3 70 THR n 3 71 GLY n 3 72 ALA n 3 73 LYS n 3 74 SER n 3 75 GLU n 3 76 ASP n 3 77 PHE n 3 78 SER n 3 79 LYS n 3 80 MET n 3 81 ALA n 3 82 ALA n 3 83 ARG n 3 84 LYS n 3 85 TYR n 3 86 ALA n 3 87 ARG n 3 88 ILE n 3 89 VAL n 3 90 GLN n 3 91 LYS n 3 92 LEU n 3 93 GLY n 3 94 PHE n 3 95 PRO n 3 96 ALA n 3 97 LYS n 3 98 PHE n 3 99 LYS n 3 100 ASP n 3 101 PHE n 3 102 LYS n 3 103 ILE n 3 104 GLN n 3 105 ASN n 3 106 ILE n 3 107 VAL n 3 108 GLY n 3 109 SER n 3 110 CYS n 3 111 ASP n 3 112 VAL n 3 113 LYS n 3 114 PHE n 3 115 PRO n 3 116 ILE n 3 117 ARG n 3 118 LEU n 3 119 GLU n 3 120 GLY n 3 121 LEU n 3 122 ALA n 3 123 TYR n 3 124 SER n 3 125 HIS n 3 126 ALA n 3 127 ALA n 3 128 PHE n 3 129 SER n 3 130 SER n 3 131 TYR n 3 132 GLU n 3 133 PRO n 3 134 GLU n 3 135 LEU n 3 136 PHE n 3 137 PRO n 3 138 GLY n 3 139 LEU n 3 140 ILE n 3 141 TYR n 3 142 ARG n 3 143 MET n 3 144 LYS n 3 145 VAL n 3 146 PRO n 3 147 LYS n 3 148 ILE n 3 149 VAL n 3 150 LEU n 3 151 LEU n 3 152 ILE n 3 153 PHE n 3 154 VAL n 3 155 SER n 3 156 GLY n 3 157 LYS n 3 158 ILE n 3 159 VAL n 3 160 ILE n 3 161 THR n 3 162 GLY n 3 163 ALA n 3 164 LYS n 3 165 MET n 3 166 ARG n 3 167 ASP n 3 168 GLU n 3 169 THR n 3 170 TYR n 3 171 LYS n 3 172 ALA n 3 173 PHE n 3 174 GLU n 3 175 ASN n 3 176 ILE n 3 177 TYR n 3 178 PRO n 3 179 VAL n 3 180 LEU n 3 181 SER n 3 182 GLU n 3 183 PHE n 3 184 ARG n 3 185 LYS n 3 186 ILE n # _entity_src_nat.entity_id 3 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'mouse-ear cress' _entity_src_nat.pdbx_organism_scientific 'ARABIDOPSIS THALIANA' _entity_src_nat.pdbx_ncbi_taxonomy_id 3702 _entity_src_nat.genus ARABIDOPSIS _entity_src_nat.species THALIANA _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 201 1 DG G A . n A 1 2 DC 2 202 2 DC C A . n A 1 3 DT 3 203 3 DT T A . n A 1 4 DA 4 204 4 DA A A . n A 1 5 DT 5 205 5 DT T A . n A 1 6 DA 6 206 6 DA A A . n A 1 7 DA 7 207 7 DA A A . n A 1 8 DA 8 208 8 DA A A . n A 1 9 DA 9 209 9 DA A A . n A 1 10 DG 10 210 10 DG G A . n A 1 11 DG 11 211 11 DG G A . n A 1 12 DG 12 212 12 DG G A . n A 1 13 DC 13 213 13 DC C A . n A 1 14 DA 14 214 14 DA A A . n B 2 1 DT 1 301 15 DT T B . n B 2 2 DG 2 302 16 DG G B . n B 2 3 DC 3 303 17 DC C B . n B 2 4 DC 4 304 18 DC C B . n B 2 5 DC 5 305 19 DC C B . n B 2 6 DT 6 306 20 DT T B . n B 2 7 DT 7 307 21 DT T B . n B 2 8 DT 8 308 22 DT T B . n B 2 9 DT 9 309 23 DT T B . n B 2 10 DA 10 310 24 DA A B . n B 2 11 DT 11 311 25 DT T B . n B 2 12 DA 12 312 26 DA A B . n B 2 13 DG 13 313 27 DG G B . n B 2 14 DC 14 314 28 DC C B . n C 1 1 DG 1 401 29 DG G C . n C 1 2 DC 2 402 30 DC C C . n C 1 3 DT 3 403 31 DT T C . n C 1 4 DA 4 404 32 DA A C . n C 1 5 DT 5 405 33 DT T C . n C 1 6 DA 6 406 34 DA A C . n C 1 7 DA 7 407 35 DA A C . n C 1 8 DA 8 408 36 DA A C . n C 1 9 DA 9 409 37 DA A C . n C 1 10 DG 10 410 38 DG G C . n C 1 11 DG 11 411 39 DG G C . n C 1 12 DG 12 412 40 DG G C . n C 1 13 DC 13 413 41 DC C C . n C 1 14 DA 14 414 42 DA A C . n D 2 1 DT 1 501 43 DT T D . n D 2 2 DG 2 502 44 DG G D . n D 2 3 DC 3 503 45 DC C D . n D 2 4 DC 4 504 46 DC C D . n D 2 5 DC 5 505 47 DC C D . n D 2 6 DT 6 506 48 DT T D . n D 2 7 DT 7 507 49 DT T D . n D 2 8 DT 8 508 50 DT T D . n D 2 9 DT 9 509 51 DT T D . n D 2 10 DA 10 510 52 DA A D . n D 2 11 DT 11 511 53 DT T D . n D 2 12 DA 12 512 54 DA A D . n D 2 13 DG 13 513 55 DG G D . n D 2 14 DC 14 514 56 DC C D . n E 3 1 ASP 1 13 69 ASP ALA E . n E 3 2 LEU 2 14 70 LEU LEU E . n E 3 3 SER 3 15 71 SER SER E . n E 3 4 LYS 4 16 72 LYS ALA E . n E 3 5 HIS 5 17 73 HIS HIS E . n E 3 6 PRO 6 18 74 PRO PRO E . n E 3 7 SER 7 19 75 SER SER E . n E 3 8 GLY 8 20 76 GLY GLY E . n E 3 9 ILE 9 21 77 ILE ILE E . n E 3 10 VAL 10 22 78 VAL VAL E . n E 3 11 PRO 11 23 79 PRO PRO E . n E 3 12 THR 12 24 80 THR THR E . n E 3 13 LEU 13 25 81 LEU LEU E . n E 3 14 GLN 14 26 82 GLN GLN E . n E 3 15 ASN 15 27 83 ASN ASN E . n E 3 16 ILE 16 28 84 ILE ILE E . n E 3 17 VAL 17 29 85 VAL VAL E . n E 3 18 SER 18 30 86 SER SER E . n E 3 19 THR 19 31 87 THR THR E . n E 3 20 VAL 20 32 88 VAL VAL E . n E 3 21 ASN 21 33 89 ASN ASN E . n E 3 22 LEU 22 34 90 LEU LEU E . n E 3 23 ASP 23 35 91 ASP ASP E . n E 3 24 CYS 24 36 92 CYS CYS E . n E 3 25 LYS 25 37 93 LYS LYS E . n E 3 26 LEU 26 38 94 LEU LEU E . n E 3 27 ASP 27 39 95 ASP ASP E . n E 3 28 LEU 28 40 96 LEU LEU E . n E 3 29 LYS 29 41 97 LYS LYS E . n E 3 30 ALA 30 42 98 ALA ALA E . n E 3 31 ILE 31 43 99 ILE ILE E . n E 3 32 ALA 32 44 100 ALA ALA E . n E 3 33 LEU 33 45 101 LEU LEU E . n E 3 34 GLN 34 46 102 GLN GLN E . n E 3 35 ALA 35 47 103 ALA ALA E . n E 3 36 ARG 36 48 104 ARG ALA E . n E 3 37 ASN 37 49 105 ASN ASN E . n E 3 38 ALA 38 50 106 ALA ALA E . n E 3 39 GLU 39 51 107 GLU GLU E . n E 3 40 TYR 40 52 108 TYR TYR E . n E 3 41 ASN 41 53 109 ASN ASN E . n E 3 42 PRO 42 54 110 PRO PRO E . n E 3 43 LYS 43 55 111 LYS LYS E . n E 3 44 ARG 44 56 112 ARG ARG E . n E 3 45 PHE 45 57 113 PHE PHE E . n E 3 46 ALA 46 58 114 ALA ALA E . n E 3 47 ALA 47 59 115 ALA ALA E . n E 3 48 VAL 48 60 116 VAL VAL E . n E 3 49 ILE 49 61 117 ILE ILE E . n E 3 50 MET 50 62 118 MET MET E . n E 3 51 ARG 51 63 119 ARG ARG E . n E 3 52 ILE 52 64 120 ILE ILE E . n E 3 53 ARG 53 65 121 ARG ARG E . n E 3 54 GLU 54 66 122 GLU GLU E . n E 3 55 PRO 55 67 123 PRO PRO E . n E 3 56 LYS 56 68 124 LYS LYS E . n E 3 57 THR 57 69 125 THR THR E . n E 3 58 THR 58 70 126 THR THR E . n E 3 59 ALA 59 71 127 ALA ALA E . n E 3 60 LEU 60 72 128 LEU LEU E . n E 3 61 ILE 61 73 129 ILE ILE E . n E 3 62 PHE 62 74 130 PHE PHE E . n E 3 63 ALA 63 75 131 ALA ALA E . n E 3 64 SER 64 76 132 SER SER E . n E 3 65 GLY 65 77 133 GLY GLY E . n E 3 66 LYS 66 78 134 LYS LYS E . n E 3 67 MET 67 79 135 MET MET E . n E 3 68 VAL 68 80 136 VAL VAL E . n E 3 69 CYS 69 81 137 CYS CYS E . n E 3 70 THR 70 82 138 THR THR E . n E 3 71 GLY 71 83 139 GLY GLY E . n E 3 72 ALA 72 84 140 ALA ALA E . n E 3 73 LYS 73 85 141 LYS LYS E . n E 3 74 SER 74 86 142 SER SER E . n E 3 75 GLU 75 87 143 GLU GLU E . n E 3 76 ASP 76 88 144 ASP ASP E . n E 3 77 PHE 77 89 145 PHE PHE E . n E 3 78 SER 78 90 146 SER SER E . n E 3 79 LYS 79 91 147 LYS LYS E . n E 3 80 MET 80 92 148 MET MET E . n E 3 81 ALA 81 93 149 ALA ALA E . n E 3 82 ALA 82 94 150 ALA ALA E . n E 3 83 ARG 83 95 151 ARG ARG E . n E 3 84 LYS 84 96 152 LYS LYS E . n E 3 85 TYR 85 97 153 TYR TYR E . n E 3 86 ALA 86 98 154 ALA ALA E . n E 3 87 ARG 87 99 155 ARG ARG E . n E 3 88 ILE 88 100 156 ILE ILE E . n E 3 89 VAL 89 101 157 VAL VAL E . n E 3 90 GLN 90 102 158 GLN GLN E . n E 3 91 LYS 91 103 159 LYS LYS E . n E 3 92 LEU 92 104 160 LEU LEU E . n E 3 93 GLY 93 105 161 GLY GLY E . n E 3 94 PHE 94 106 162 PHE PHE E . n E 3 95 PRO 95 107 163 PRO PRO E . n E 3 96 ALA 96 108 164 ALA ALA E . n E 3 97 LYS 97 109 165 LYS LYS E . n E 3 98 PHE 98 110 166 PHE PHE E . n E 3 99 LYS 99 111 167 LYS LYS E . n E 3 100 ASP 100 112 168 ASP ASP E . n E 3 101 PHE 101 113 169 PHE PHE E . n E 3 102 LYS 102 114 170 LYS LYS E . n E 3 103 ILE 103 115 171 ILE ILE E . n E 3 104 GLN 104 116 172 GLN GLN E . n E 3 105 ASN 105 117 173 ASN ASN E . n E 3 106 ILE 106 118 174 ILE ILE E . n E 3 107 VAL 107 119 175 VAL VAL E . n E 3 108 GLY 108 120 176 GLY GLY E . n E 3 109 SER 109 121 177 SER SER E . n E 3 110 CYS 110 122 178 CYS CYS E . n E 3 111 ASP 111 123 179 ASP ASP E . n E 3 112 VAL 112 124 180 VAL VAL E . n E 3 113 LYS 113 125 181 LYS LYS E . n E 3 114 PHE 114 126 182 PHE PHE E . n E 3 115 PRO 115 127 183 PRO PRO E . n E 3 116 ILE 116 128 184 ILE ILE E . n E 3 117 ARG 117 129 185 ARG ARG E . n E 3 118 LEU 118 130 186 LEU LEU E . n E 3 119 GLU 119 131 187 GLU GLU E . n E 3 120 GLY 120 132 188 GLY GLY E . n E 3 121 LEU 121 133 189 LEU LEU E . n E 3 122 ALA 122 134 190 ALA ALA E . n E 3 123 TYR 123 135 191 TYR TYR E . n E 3 124 SER 124 136 192 SER SER E . n E 3 125 HIS 125 137 193 HIS HIS E . n E 3 126 ALA 126 138 194 ALA ALA E . n E 3 127 ALA 127 139 195 ALA ALA E . n E 3 128 PHE 128 140 196 PHE PHE E . n E 3 129 SER 129 141 197 SER SER E . n E 3 130 SER 130 142 198 SER SER E . n E 3 131 TYR 131 143 199 TYR TYR E . n E 3 132 GLU 132 144 200 GLU GLU E . n E 3 133 PRO 133 145 201 PRO PRO E . n E 3 134 GLU 134 146 202 GLU GLU E . n E 3 135 LEU 135 147 203 LEU LEU E . n E 3 136 PHE 136 148 204 PHE PHE E . n E 3 137 PRO 137 149 205 PRO PRO E . n E 3 138 GLY 138 150 206 GLY GLY E . n E 3 139 LEU 139 151 207 LEU LEU E . n E 3 140 ILE 140 152 208 ILE ILE E . n E 3 141 TYR 141 153 209 TYR TYR E . n E 3 142 ARG 142 154 210 ARG ARG E . n E 3 143 MET 143 155 211 MET MET E . n E 3 144 LYS 144 156 212 LYS LYS E . n E 3 145 VAL 145 157 213 VAL VAL E . n E 3 146 PRO 146 158 214 PRO PRO E . n E 3 147 LYS 147 159 215 LYS LYS E . n E 3 148 ILE 148 160 216 ILE ILE E . n E 3 149 VAL 149 161 217 VAL VAL E . n E 3 150 LEU 150 162 218 LEU LEU E . n E 3 151 LEU 151 163 219 LEU LEU E . n E 3 152 ILE 152 164 220 ILE ILE E . n E 3 153 PHE 153 165 221 PHE PHE E . n E 3 154 VAL 154 166 222 VAL VAL E . n E 3 155 SER 155 167 223 SER SER E . n E 3 156 GLY 156 168 224 GLY GLY E . n E 3 157 LYS 157 169 225 LYS LYS E . n E 3 158 ILE 158 170 226 ILE ILE E . n E 3 159 VAL 159 171 227 VAL VAL E . n E 3 160 ILE 160 172 228 ILE ILE E . n E 3 161 THR 161 173 229 THR THR E . n E 3 162 GLY 162 174 230 GLY GLY E . n E 3 163 ALA 163 175 231 ALA ALA E . n E 3 164 LYS 164 176 232 LYS LYS E . n E 3 165 MET 165 177 233 MET MET E . n E 3 166 ARG 166 178 234 ARG ARG E . n E 3 167 ASP 167 179 235 ASP ASP E . n E 3 168 GLU 168 180 236 GLU GLU E . n E 3 169 THR 169 181 237 THR THR E . n E 3 170 TYR 170 182 238 TYR TYR E . n E 3 171 LYS 171 183 239 LYS LYS E . n E 3 172 ALA 172 184 240 ALA ALA E . n E 3 173 PHE 173 185 241 PHE PHE E . n E 3 174 GLU 174 186 242 GLU GLU E . n E 3 175 ASN 175 187 243 ASN ASN E . n E 3 176 ILE 176 188 244 ILE ILE E . n E 3 177 TYR 177 189 245 TYR TYR E . n E 3 178 PRO 178 190 246 PRO PRO E . n E 3 179 VAL 179 191 247 VAL VAL E . n E 3 180 LEU 180 192 248 LEU LEU E . n E 3 181 SER 181 193 249 SER SER E . n E 3 182 GLU 182 194 250 GLU GLU E . n E 3 183 PHE 183 195 251 PHE PHE E . n E 3 184 ARG 184 196 252 ARG ARG E . n E 3 185 LYS 185 197 253 LYS LYS E . n E 3 186 ILE 186 198 254 ILE ILE E . n F 3 1 ASP 1 13 267 ASP ASP F . n F 3 2 LEU 2 14 268 LEU LEU F . n F 3 3 SER 3 15 269 SER SER F . n F 3 4 LYS 4 16 270 LYS ALA F . n F 3 5 HIS 5 17 271 HIS HIS F . n F 3 6 PRO 6 18 272 PRO PRO F . n F 3 7 SER 7 19 273 SER SER F . n F 3 8 GLY 8 20 274 GLY GLY F . n F 3 9 ILE 9 21 275 ILE ILE F . n F 3 10 VAL 10 22 276 VAL VAL F . n F 3 11 PRO 11 23 277 PRO PRO F . n F 3 12 THR 12 24 278 THR THR F . n F 3 13 LEU 13 25 279 LEU LEU F . n F 3 14 GLN 14 26 280 GLN GLN F . n F 3 15 ASN 15 27 281 ASN ASN F . n F 3 16 ILE 16 28 282 ILE ILE F . n F 3 17 VAL 17 29 283 VAL VAL F . n F 3 18 SER 18 30 284 SER SER F . n F 3 19 THR 19 31 285 THR THR F . n F 3 20 VAL 20 32 286 VAL VAL F . n F 3 21 ASN 21 33 287 ASN ASN F . n F 3 22 LEU 22 34 288 LEU LEU F . n F 3 23 ASP 23 35 289 ASP ASP F . n F 3 24 CYS 24 36 290 CYS CYS F . n F 3 25 LYS 25 37 291 LYS LYS F . n F 3 26 LEU 26 38 292 LEU LEU F . n F 3 27 ASP 27 39 293 ASP ASP F . n F 3 28 LEU 28 40 294 LEU LEU F . n F 3 29 LYS 29 41 295 LYS LYS F . n F 3 30 ALA 30 42 296 ALA ALA F . n F 3 31 ILE 31 43 297 ILE ILE F . n F 3 32 ALA 32 44 298 ALA ALA F . n F 3 33 LEU 33 45 299 LEU LEU F . n F 3 34 GLN 34 46 300 GLN GLN F . n F 3 35 ALA 35 47 301 ALA ALA F . n F 3 36 ARG 36 48 302 ARG ARG F . n F 3 37 ASN 37 49 303 ASN ASN F . n F 3 38 ALA 38 50 304 ALA ALA F . n F 3 39 GLU 39 51 305 GLU GLU F . n F 3 40 TYR 40 52 306 TYR TYR F . n F 3 41 ASN 41 53 307 ASN ASN F . n F 3 42 PRO 42 54 308 PRO PRO F . n F 3 43 LYS 43 55 309 LYS LYS F . n F 3 44 ARG 44 56 310 ARG ARG F . n F 3 45 PHE 45 57 311 PHE PHE F . n F 3 46 ALA 46 58 312 ALA ALA F . n F 3 47 ALA 47 59 313 ALA ALA F . n F 3 48 VAL 48 60 314 VAL VAL F . n F 3 49 ILE 49 61 315 ILE ILE F . n F 3 50 MET 50 62 316 MET MET F . n F 3 51 ARG 51 63 319 ARG ARG F . n F 3 52 ILE 52 64 318 ILE ILE F . n F 3 53 ARG 53 65 319 ARG ARG F . n F 3 54 GLU 54 66 320 GLU GLU F . n F 3 55 PRO 55 67 321 PRO PRO F . n F 3 56 LYS 56 68 322 LYS LYS F . n F 3 57 THR 57 69 323 THR THR F . n F 3 58 THR 58 70 324 THR THR F . n F 3 59 ALA 59 71 325 ALA ALA F . n F 3 60 LEU 60 72 326 LEU LEU F . n F 3 61 ILE 61 73 327 ILE ILE F . n F 3 62 PHE 62 74 328 PHE PHE F . n F 3 63 ALA 63 75 329 ALA ALA F . n F 3 64 SER 64 76 330 SER SER F . n F 3 65 GLY 65 77 331 GLY GLY F . n F 3 66 LYS 66 78 332 LYS LYS F . n F 3 67 MET 67 79 333 MET MET F . n F 3 68 VAL 68 80 334 VAL VAL F . n F 3 69 CYS 69 81 335 CYS CYS F . n F 3 70 THR 70 82 336 THR THR F . n F 3 71 GLY 71 83 337 GLY GLY F . n F 3 72 ALA 72 84 338 ALA ALA F . n F 3 73 LYS 73 85 345 LYS LYS F . n F 3 74 SER 74 86 340 SER SER F . n F 3 75 GLU 75 87 341 GLU GLU F . n F 3 76 ASP 76 88 342 ASP ASP F . n F 3 77 PHE 77 89 343 PHE PHE F . n F 3 78 SER 78 90 344 SER SER F . n F 3 79 LYS 79 91 345 LYS LYS F . n F 3 80 MET 80 92 346 MET MET F . n F 3 81 ALA 81 93 347 ALA ALA F . n F 3 82 ALA 82 94 348 ALA ALA F . n F 3 83 ARG 83 95 349 ARG ARG F . n F 3 84 LYS 84 96 350 LYS LYS F . n F 3 85 TYR 85 97 351 TYR TYR F . n F 3 86 ALA 86 98 352 ALA ALA F . n F 3 87 ARG 87 99 353 ARG ARG F . n F 3 88 ILE 88 100 354 ILE ILE F . n F 3 89 VAL 89 101 355 VAL VAL F . n F 3 90 GLN 90 102 356 GLN GLN F . n F 3 91 LYS 91 103 357 LYS LYS F . n F 3 92 LEU 92 104 358 LEU LEU F . n F 3 93 GLY 93 105 359 GLY GLY F . n F 3 94 PHE 94 106 364 PHE PHE F . n F 3 95 PRO 95 107 361 PRO PRO F . n F 3 96 ALA 96 108 362 ALA ALA F . n F 3 97 LYS 97 109 363 LYS LYS F . n F 3 98 PHE 98 110 364 PHE PHE F . n F 3 99 LYS 99 111 365 LYS LYS F . n F 3 100 ASP 100 112 366 ASP ASP F . n F 3 101 PHE 101 113 367 PHE PHE F . n F 3 102 LYS 102 114 368 LYS LYS F . n F 3 103 ILE 103 115 369 ILE ILE F . n F 3 104 GLN 104 116 370 GLN GLN F . n F 3 105 ASN 105 117 371 ASN ASN F . n F 3 106 ILE 106 118 372 ILE ILE F . n F 3 107 VAL 107 119 373 VAL VAL F . n F 3 108 GLY 108 120 374 GLY GLY F . n F 3 109 SER 109 121 375 SER SER F . n F 3 110 CYS 110 122 376 CYS CYS F . n F 3 111 ASP 111 123 377 ASP ASP F . n F 3 112 VAL 112 124 378 VAL VAL F . n F 3 113 LYS 113 125 379 LYS LYS F . n F 3 114 PHE 114 126 380 PHE PHE F . n F 3 115 PRO 115 127 381 PRO PRO F . n F 3 116 ILE 116 128 382 ILE ILE F . n F 3 117 ARG 117 129 383 ARG ARG F . n F 3 118 LEU 118 130 384 LEU LEU F . n F 3 119 GLU 119 131 385 GLU GLU F . n F 3 120 GLY 120 132 386 GLY GLY F . n F 3 121 LEU 121 133 387 LEU LEU F . n F 3 122 ALA 122 134 388 ALA ALA F . n F 3 123 TYR 123 135 389 TYR TYR F . n F 3 124 SER 124 136 390 SER SER F . n F 3 125 HIS 125 137 391 HIS HIS F . n F 3 126 ALA 126 138 392 ALA ALA F . n F 3 127 ALA 127 139 393 ALA ALA F . n F 3 128 PHE 128 140 394 PHE PHE F . n F 3 129 SER 129 141 395 SER SER F . n F 3 130 SER 130 142 396 SER SER F . n F 3 131 TYR 131 143 397 TYR TYR F . n F 3 132 GLU 132 144 398 GLU GLU F . n F 3 133 PRO 133 145 399 PRO PRO F . n F 3 134 GLU 134 146 400 GLU GLU F . n F 3 135 LEU 135 147 401 LEU LEU F . n F 3 136 PHE 136 148 402 PHE PHE F . n F 3 137 PRO 137 149 403 PRO PRO F . n F 3 138 GLY 138 150 404 GLY GLY F . n F 3 139 LEU 139 151 405 LEU LEU F . n F 3 140 ILE 140 152 406 ILE ILE F . n F 3 141 TYR 141 153 407 TYR TYR F . n F 3 142 ARG 142 154 408 ARG ARG F . n F 3 143 MET 143 155 409 MET MET F . n F 3 144 LYS 144 156 410 LYS LYS F . n F 3 145 VAL 145 157 411 VAL VAL F . n F 3 146 PRO 146 158 412 PRO PRO F . n F 3 147 LYS 147 159 413 LYS LYS F . n F 3 148 ILE 148 160 414 ILE ILE F . n F 3 149 VAL 149 161 415 VAL VAL F . n F 3 150 LEU 150 162 416 LEU LEU F . n F 3 151 LEU 151 163 417 LEU LEU F . n F 3 152 ILE 152 164 418 ILE ILE F . n F 3 153 PHE 153 165 419 PHE PHE F . n F 3 154 VAL 154 166 420 VAL VAL F . n F 3 155 SER 155 167 421 SER SER F . n F 3 156 GLY 156 168 422 GLY GLY F . n F 3 157 LYS 157 169 423 LYS LYS F . n F 3 158 ILE 158 170 424 ILE ILE F . n F 3 159 VAL 159 171 425 VAL VAL F . n F 3 160 ILE 160 172 426 ILE ILE F . n F 3 161 THR 161 173 427 THR THR F . n F 3 162 GLY 162 174 428 GLY GLY F . n F 3 163 ALA 163 175 429 ALA ALA F . n F 3 164 LYS 164 176 430 LYS LYS F . n F 3 165 MET 165 177 431 MET MET F . n F 3 166 ARG 166 178 432 ARG ARG F . n F 3 167 ASP 167 179 433 ASP ASP F . n F 3 168 GLU 168 180 434 GLU GLU F . n F 3 169 THR 169 181 435 THR THR F . n F 3 170 TYR 170 182 436 TYR TYR F . n F 3 171 LYS 171 183 437 LYS LYS F . n F 3 172 ALA 172 184 438 ALA ALA F . n F 3 173 PHE 173 185 439 PHE PHE F . n F 3 174 GLU 174 186 440 GLU GLU F . n F 3 175 ASN 175 187 441 ASN ASN F . n F 3 176 ILE 176 188 442 ILE ILE F . n F 3 177 TYR 177 189 443 TYR TYR F . n F 3 178 PRO 178 190 444 PRO PRO F . n F 3 179 VAL 179 191 445 VAL VAL F . n F 3 180 LEU 180 192 446 LEU LEU F . n F 3 181 SER 181 193 447 SER SER F . n F 3 182 GLU 182 194 448 GLU GLU F . n F 3 183 PHE 183 195 449 PHE PHE F . n F 3 184 ARG 184 196 450 ARG ARG F . n F 3 185 LYS 185 197 451 LYS LYS F . n F 3 186 ILE 186 198 452 ILE ILE F . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 E ASP 13 ? CG ? E ASP 1 CG 2 1 Y 1 E ASP 13 ? OD1 ? E ASP 1 OD1 3 1 Y 1 E ASP 13 ? OD2 ? E ASP 1 OD2 4 1 Y 1 E LYS 16 ? CG ? E LYS 4 CG 5 1 Y 1 E LYS 16 ? CD ? E LYS 4 CD 6 1 Y 1 E LYS 16 ? CE ? E LYS 4 CE 7 1 Y 1 E LYS 16 ? NZ ? E LYS 4 NZ 8 1 Y 1 E ARG 48 ? CG ? E ARG 36 CG 9 1 Y 1 E ARG 48 ? CD ? E ARG 36 CD 10 1 Y 1 E ARG 48 ? NE ? E ARG 36 NE 11 1 Y 1 E ARG 48 ? CZ ? E ARG 36 CZ 12 1 Y 1 E ARG 48 ? NH1 ? E ARG 36 NH1 13 1 Y 1 E ARG 48 ? NH2 ? E ARG 36 NH2 14 1 Y 1 F LYS 16 ? CG ? F LYS 4 CG 15 1 Y 1 F LYS 16 ? CD ? F LYS 4 CD 16 1 Y 1 F LYS 16 ? CE ? F LYS 4 CE 17 1 Y 1 F LYS 16 ? NZ ? F LYS 4 NZ # _software.name X-PLOR _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1VTL _cell.length_a 41.800 _cell.length_b 146.500 _cell.length_c 57.600 _cell.angle_alpha 90.00 _cell.angle_beta 90.60 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1VTL _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1VTL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 58.88 _exptl_crystal.density_Matthews 2.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.20 _exptl_crystal_grow.pdbx_details 'pH 6.20, VAPOR DIFFUSION, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER 1 2 3 1 2 1 DTT 4 5 6 1 3 1 GLYCEROL 7 8 9 1 4 1 MES 10 11 12 1 5 1 KCL 13 14 15 1 6 1 'NH4 ACETATE' 16 17 18 1 7 2 WATER 19 20 21 1 8 2 DTT 22 23 24 1 9 2 GLYCEROL 25 26 27 1 10 2 MES 28 29 30 # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 123.00 ? 1 2 123.00 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 'IMAGE PLATE' 'RIGAKU RAXIS IIC' ? ? 2 'AREA DETECTOR' SIEMENS-NICOLET ? ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ? 'SINGLE WAVELENGTH' x-ray 2 2 M ? 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 . 1.0 2 . 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 'ROTATING ANODE' ? ? ? ? ? 2 'ROTATING ANODE' ? ? ? ? ? # _reflns.entry_id 1VTL _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.600 _reflns.number_obs 18312 _reflns.number_all 47659 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.entry_id 1VTL _refine.ls_number_reflns_obs 27613 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.500 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.000 _refine.ls_d_res_high 2.250 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2020000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2020000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1,2 _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2921 _refine_hist.pdbx_number_atoms_nucleic_acid 1136 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 4057 _refine_hist.d_res_high 2.250 _refine_hist.d_res_low 6.000 # _database_PDB_matrix.entry_id 1VTL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VTL _struct.title 'CO-CRYSTAL STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF A TATA ELEMENT' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VTL _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP TF21_ARATH 3 ? ? P28147 ? 2 PDB 1VTL 1 ? ? 1VTL ? 3 PDB 1VTL 2 ? ? 1VTL ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VTL E 1 ? 186 ? P28147 13 ? 198 ? 13 198 2 1 1VTL F 1 ? 186 ? P28147 13 ? 198 ? 13 198 3 2 1VTL A 1 ? 14 ? 1VTL 201 ? 214 ? 201 214 4 2 1VTL C 1 ? 14 ? 1VTL 401 ? 414 ? 401 414 5 3 1VTL B 1 ? 14 ? 1VTL 301 ? 314 ? 301 314 6 3 1VTL D 1 ? 14 ? 1VTL 501 ? 514 ? 501 514 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? trimeric 3 2 author_defined_assembly ? trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E 2 1 C,D,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP E 27 ? ALA E 35 ? ASP E 39 ALA E 47 1 ? 9 HELX_P HELX_P2 2 SER E 74 ? LYS E 91 ? SER E 86 LYS E 103 1 ? 18 HELX_P HELX_P3 3 ARG E 117 ? HIS E 125 ? ARG E 129 HIS E 137 1 ? 9 HELX_P HELX_P4 4 MET E 165 ? PHE E 183 ? MET E 177 PHE E 195 1 ? 19 HELX_P HELX_P5 5 ASP F 27 ? ALA F 35 ? ASP F 39 ALA F 47 1 ? 9 HELX_P HELX_P6 6 SER F 74 ? LEU F 92 ? SER F 86 LEU F 104 1 ? 19 HELX_P HELX_P7 7 ARG F 117 ? HIS F 125 ? ARG F 129 HIS F 137 1 ? 9 HELX_P HELX_P8 8 MET F 165 ? SER F 181 ? MET F 177 SER F 193 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 14 N3 ? ? A DG 201 B DC 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 14 O2 ? ? A DG 201 B DC 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 14 N4 ? ? A DG 201 B DC 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 13 N1 ? ? A DC 202 B DG 313 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 13 O6 ? ? A DC 202 B DG 313 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 13 N2 ? ? A DC 202 B DG 313 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 203 B DA 312 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 203 B DA 312 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 11 N3 ? ? A DA 204 B DT 311 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 11 O4 ? ? A DA 204 B DT 311 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 205 B DA 310 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 205 B DA 310 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 206 B DT 309 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 206 B DT 309 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 207 B DT 308 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 207 B DT 308 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 208 B DT 307 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 208 B DT 307 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 209 B DT 306 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 209 B DT 306 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 210 B DC 305 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 210 B DC 305 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 210 B DC 305 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 211 B DC 304 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 211 B DC 304 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 211 B DC 304 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 212 B DC 303 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 212 B DC 303 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 212 B DC 303 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 213 B DG 302 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 213 B DG 302 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 213 B DG 302 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 14 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 214 B DT 301 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DA 14 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 214 B DT 301 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 14 N3 ? ? C DG 401 D DC 514 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 14 O2 ? ? C DG 401 D DC 514 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 14 N4 ? ? C DG 401 D DC 514 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 13 N1 ? ? C DC 402 D DG 513 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 13 O6 ? ? C DC 402 D DG 513 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 13 N2 ? ? C DC 402 D DG 513 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 12 N1 ? ? C DT 403 D DA 512 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 12 N6 ? ? C DT 403 D DA 512 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 11 N3 ? ? C DA 404 D DT 511 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 11 O4 ? ? C DA 404 D DT 511 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 10 N1 ? ? C DT 405 D DA 510 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 10 N6 ? ? C DT 405 D DA 510 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 9 N3 ? ? C DA 406 D DT 509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 9 O4 ? ? C DA 406 D DT 509 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DA 7 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 407 D DT 508 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DA 7 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 407 D DT 508 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DA 8 N1 ? ? ? 1_555 D DT 7 N3 ? ? C DA 408 D DT 507 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DA 8 N6 ? ? ? 1_555 D DT 7 O4 ? ? C DA 408 D DT 507 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DA 9 N1 ? ? ? 1_555 D DT 6 N3 ? ? C DA 409 D DT 506 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DA 9 N6 ? ? ? 1_555 D DT 6 O4 ? ? C DA 409 D DT 506 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 410 D DC 505 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C DG 10 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 410 D DC 505 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 410 D DC 505 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C DG 11 N1 ? ? ? 1_555 D DC 4 N3 ? ? C DG 411 D DC 504 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C DG 11 N2 ? ? ? 1_555 D DC 4 O2 ? ? C DG 411 D DC 504 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C DG 11 O6 ? ? ? 1_555 D DC 4 N4 ? ? C DG 411 D DC 504 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C DG 12 N1 ? ? ? 1_555 D DC 3 N3 ? ? C DG 412 D DC 503 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C DG 12 N2 ? ? ? 1_555 D DC 3 O2 ? ? C DG 412 D DC 503 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C DG 12 O6 ? ? ? 1_555 D DC 3 N4 ? ? C DG 412 D DC 503 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C DC 13 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 413 D DG 502 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C DC 13 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 413 D DG 502 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C DC 13 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 413 D DG 502 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C DA 14 N1 ? ? ? 1_555 D DT 1 N3 ? ? C DA 414 D DT 501 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C DA 14 N6 ? ? ? 1_555 D DT 1 O4 ? ? C DA 414 D DT 501 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 54 E . ? GLU 66 E PRO 55 E ? PRO 67 E 1 -0.89 2 VAL 145 E . ? VAL 157 E PRO 146 E ? PRO 158 E 1 -0.46 3 GLU 54 F . ? GLU 66 F PRO 55 F ? PRO 67 F 1 -0.86 4 VAL 145 F . ? VAL 157 F PRO 146 F ? PRO 158 F 1 -0.40 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 10 ? B ? 10 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel B 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA E 38 ? GLU E 39 ? ALA E 50 GLU E 51 A 2 VAL E 48 ? ILE E 52 ? VAL E 60 ILE E 64 A 3 THR E 57 ? ILE E 61 ? THR E 69 ILE E 73 A 4 LYS E 66 ? ALA E 72 ? LYS E 78 ALA E 84 A 5 THR E 12 ? ASN E 21 ? THR E 24 ASN E 33 A 6 LYS E 99 ? ASP E 111 ? LYS E 111 ASP E 123 A 7 LYS E 157 ? ALA E 163 ? LYS E 169 ALA E 175 A 8 ILE E 148 ? ILE E 152 ? ILE E 160 ILE E 164 A 9 LEU E 139 ? MET E 143 ? LEU E 151 MET E 155 A 10 SER E 129 ? SER E 130 ? SER E 141 SER E 142 B 1 GLU F 39 ? TYR F 40 ? GLU F 51 TYR F 52 B 2 VAL F 48 ? ILE F 52 ? VAL F 60 ILE F 64 B 3 THR F 57 ? ILE F 61 ? THR F 69 ILE F 73 B 4 LYS F 66 ? ALA F 72 ? LYS F 78 ALA F 84 B 5 THR F 12 ? ASN F 21 ? THR F 24 ASN F 33 B 6 LYS F 99 ? ASP F 111 ? LYS F 111 ASP F 123 B 7 LYS F 157 ? ALA F 163 ? LYS F 169 ALA F 175 B 8 VAL F 149 ? ILE F 152 ? VAL F 161 ILE F 164 B 9 LEU F 139 ? ARG F 142 ? LEU F 151 ARG F 154 B 10 SER F 129 ? SER F 130 ? SER F 141 SER F 142 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU E 39 ? N GLU E 51 O ILE E 49 ? O ILE E 61 A 2 3 O ILE E 52 ? O ILE E 64 N THR E 57 ? N THR E 69 A 3 4 N LEU E 60 ? N LEU E 72 O VAL E 68 ? O VAL E 80 A 4 5 N ALA E 72 ? N ALA E 84 O ILE E 16 ? O ILE E 28 A 5 6 O ASN E 21 ? O ASN E 33 N LYS E 99 ? N LYS E 111 A 6 7 O CYS E 110 ? O CYS E 122 N ILE E 158 ? N ILE E 170 A 7 8 N THR E 161 ? N THR E 173 O VAL E 149 ? O VAL E 161 A 8 9 O ILE E 152 ? O ILE E 164 N LEU E 139 ? N LEU E 151 A 9 10 N ILE E 140 ? N ILE E 152 O SER E 130 ? O SER E 142 B 1 2 O GLU F 39 ? O GLU F 51 N ILE F 49 ? N ILE F 61 B 2 3 O ILE F 52 ? O ILE F 64 N THR F 57 ? N THR F 69 B 3 4 N LEU F 60 ? N LEU F 72 O VAL F 68 ? O VAL F 80 B 4 5 O ALA F 72 ? O ALA F 84 N ILE F 16 ? N ILE F 28 B 5 6 O ASN F 21 ? O ASN F 33 N LYS F 99 ? N LYS F 111 B 6 7 O CYS F 110 ? O CYS F 122 N ILE F 158 ? N ILE F 170 B 7 8 N THR F 161 ? N THR F 173 O VAL F 149 ? O VAL F 161 B 8 9 O ILE F 152 ? O ILE F 164 N LEU F 139 ? N LEU F 151 B 9 10 N ILE F 140 ? N ILE F 152 O SER F 130 ? O SER F 142 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O6 A DG 211 ? ? H42 B DC 304 ? ? 1.50 2 1 OP1 C DG 410 ? ? HG F SER 76 ? ? 1.52 3 1 N1 A DA 204 ? ? H3 B DT 311 ? ? 1.55 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 B DT 307 ? ? C7 B DT 307 ? ? 1.539 1.496 0.043 0.006 N 2 1 CB E CYS 122 ? ? SG E CYS 122 ? ? 1.706 1.812 -0.106 0.016 N 3 1 CB F CYS 122 ? ? SG F CYS 122 ? ? 1.714 1.812 -0.098 0.016 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 201 ? ? "C4'" A DG 201 ? ? "C3'" A DG 201 ? ? 101.32 104.50 -3.18 0.40 N 2 1 "O4'" A DG 201 ? ? "C1'" A DG 201 ? ? N9 A DG 201 ? ? 112.64 108.30 4.34 0.30 N 3 1 "C1'" A DC 202 ? ? "O4'" A DC 202 ? ? "C4'" A DC 202 ? ? 103.60 110.10 -6.50 1.00 N 4 1 "C3'" A DC 202 ? ? "C2'" A DC 202 ? ? "C1'" A DC 202 ? ? 97.26 102.40 -5.14 0.80 N 5 1 "O4'" A DC 202 ? ? "C1'" A DC 202 ? ? N1 A DC 202 ? ? 116.44 108.30 8.14 0.30 N 6 1 "O4'" A DT 203 ? ? "C1'" A DT 203 ? ? N1 A DT 203 ? ? 113.64 108.30 5.34 0.30 N 7 1 N3 A DT 203 ? ? C2 A DT 203 ? ? O2 A DT 203 ? ? 117.63 122.30 -4.67 0.60 N 8 1 C6 A DT 205 ? ? C5 A DT 205 ? ? C7 A DT 205 ? ? 118.35 122.90 -4.55 0.60 N 9 1 "O4'" A DC 213 ? ? "C1'" A DC 213 ? ? N1 A DC 213 ? ? 114.31 108.30 6.01 0.30 N 10 1 "O4'" B DT 301 ? ? "C1'" B DT 301 ? ? N1 B DT 301 ? ? 111.26 108.30 2.96 0.30 N 11 1 "O4'" B DG 302 ? ? "C4'" B DG 302 ? ? "C3'" B DG 302 ? ? 99.40 104.50 -5.10 0.40 N 12 1 "C3'" B DG 302 ? ? "C2'" B DG 302 ? ? "C1'" B DG 302 ? ? 97.44 102.40 -4.96 0.80 N 13 1 "O4'" B DC 304 ? ? "C1'" B DC 304 ? ? N1 B DC 304 ? ? 110.40 108.30 2.10 0.30 N 14 1 "O5'" B DC 305 ? ? "C5'" B DC 305 ? ? "C4'" B DC 305 ? ? 104.49 109.40 -4.91 0.80 N 15 1 "O4'" B DC 305 ? ? "C1'" B DC 305 ? ? "C2'" B DC 305 ? ? 100.65 105.90 -5.25 0.80 N 16 1 "O4'" B DC 305 ? ? "C1'" B DC 305 ? ? N1 B DC 305 ? ? 110.57 108.30 2.27 0.30 N 17 1 "O4'" B DT 307 ? ? "C1'" B DT 307 ? ? N1 B DT 307 ? ? 110.59 108.30 2.29 0.30 N 18 1 C6 B DT 307 ? ? C5 B DT 307 ? ? C7 B DT 307 ? ? 117.53 122.90 -5.37 0.60 N 19 1 C4 B DT 308 ? ? C5 B DT 308 ? ? C6 B DT 308 ? ? 121.76 118.00 3.76 0.60 N 20 1 C6 B DT 308 ? ? C5 B DT 308 ? ? C7 B DT 308 ? ? 119.20 122.90 -3.70 0.60 N 21 1 "O4'" B DT 309 ? ? "C4'" B DT 309 ? ? "C3'" B DT 309 ? ? 97.81 104.50 -6.69 0.40 N 22 1 C4 B DT 309 ? ? C5 B DT 309 ? ? C6 B DT 309 ? ? 121.61 118.00 3.61 0.60 N 23 1 C6 B DT 309 ? ? C5 B DT 309 ? ? C7 B DT 309 ? ? 116.41 122.90 -6.49 0.60 N 24 1 C4 B DT 311 ? ? C5 B DT 311 ? ? C6 B DT 311 ? ? 122.28 118.00 4.28 0.60 N 25 1 N3 B DT 311 ? ? C2 B DT 311 ? ? O2 B DT 311 ? ? 118.35 122.30 -3.95 0.60 N 26 1 C6 B DT 311 ? ? C5 B DT 311 ? ? C7 B DT 311 ? ? 118.35 122.90 -4.55 0.60 N 27 1 "C3'" B DA 312 ? ? "C2'" B DA 312 ? ? "C1'" B DA 312 ? ? 97.12 102.40 -5.28 0.80 N 28 1 "O4'" B DG 313 ? ? "C1'" B DG 313 ? ? N9 B DG 313 ? ? 113.98 108.30 5.68 0.30 N 29 1 "C3'" B DG 313 ? ? "O3'" B DG 313 ? ? P B DC 314 ? ? 127.65 119.70 7.95 1.20 Y 30 1 C6 C DT 403 ? ? C5 C DT 403 ? ? C7 C DT 403 ? ? 118.65 122.90 -4.25 0.60 N 31 1 C6 C DT 405 ? ? C5 C DT 405 ? ? C7 C DT 405 ? ? 118.93 122.90 -3.97 0.60 N 32 1 "O4'" C DA 407 ? ? "C4'" C DA 407 ? ? "C3'" C DA 407 ? ? 100.49 104.50 -4.01 0.40 N 33 1 "C3'" C DG 410 ? ? "C2'" C DG 410 ? ? "C1'" C DG 410 ? ? 97.38 102.40 -5.02 0.80 N 34 1 N3 C DG 410 ? ? C4 C DG 410 ? ? N9 C DG 410 ? ? 122.20 126.00 -3.80 0.60 N 35 1 C8 C DG 410 ? ? N9 C DG 410 ? ? "C1'" C DG 410 ? ? 135.95 127.00 8.95 1.30 N 36 1 C4 C DG 410 ? ? N9 C DG 410 ? ? "C1'" C DG 410 ? ? 117.59 126.50 -8.91 1.30 N 37 1 "O4'" C DG 411 ? ? "C1'" C DG 411 ? ? N9 C DG 411 ? ? 111.42 108.30 3.12 0.30 N 38 1 "O4'" C DG 412 ? ? "C1'" C DG 412 ? ? N9 C DG 412 ? ? 110.39 108.30 2.09 0.30 N 39 1 "O4'" C DC 413 ? ? "C1'" C DC 413 ? ? N1 C DC 413 ? ? 111.81 108.30 3.51 0.30 N 40 1 "O4'" C DA 414 ? ? "C1'" C DA 414 ? ? N9 C DA 414 ? ? 113.45 108.30 5.15 0.30 N 41 1 "O4'" D DT 501 ? ? "C1'" D DT 501 ? ? "C2'" D DT 501 ? ? 100.41 105.90 -5.49 0.80 N 42 1 C6 D DT 501 ? ? C5 D DT 501 ? ? C7 D DT 501 ? ? 117.73 122.90 -5.17 0.60 N 43 1 "O4'" D DG 502 ? ? "C4'" D DG 502 ? ? "C3'" D DG 502 ? ? 101.78 104.50 -2.72 0.40 N 44 1 "C1'" D DG 502 ? ? "O4'" D DG 502 ? ? "C4'" D DG 502 ? ? 103.75 110.10 -6.35 1.00 N 45 1 "O4'" D DG 502 ? ? "C1'" D DG 502 ? ? "C2'" D DG 502 ? ? 100.72 105.90 -5.18 0.80 N 46 1 "O4'" D DG 502 ? ? "C1'" D DG 502 ? ? N9 D DG 502 ? ? 102.88 108.00 -5.12 0.70 N 47 1 "O4'" D DC 504 ? ? "C1'" D DC 504 ? ? N1 D DC 504 ? ? 112.35 108.30 4.05 0.30 N 48 1 C6 D DT 506 ? ? C5 D DT 506 ? ? C7 D DT 506 ? ? 117.46 122.90 -5.44 0.60 N 49 1 C6 D DT 507 ? ? C5 D DT 507 ? ? C7 D DT 507 ? ? 118.19 122.90 -4.71 0.60 N 50 1 "O4'" D DT 509 ? ? "C4'" D DT 509 ? ? "C3'" D DT 509 ? ? 100.70 104.50 -3.80 0.40 N 51 1 C6 D DT 509 ? ? C5 D DT 509 ? ? C7 D DT 509 ? ? 118.34 122.90 -4.56 0.60 N 52 1 "O4'" D DA 510 ? ? "C1'" D DA 510 ? ? N9 D DA 510 ? ? 112.01 108.30 3.71 0.30 N 53 1 "O4'" D DT 511 ? ? "C1'" D DT 511 ? ? N1 D DT 511 ? ? 112.20 108.30 3.90 0.30 N 54 1 "O4'" D DA 512 ? ? "C1'" D DA 512 ? ? N9 D DA 512 ? ? 111.04 108.30 2.74 0.30 N 55 1 P D DC 514 ? ? "O5'" D DC 514 ? ? "C5'" D DC 514 ? ? 110.70 120.90 -10.20 1.60 N 56 1 "O4'" D DC 514 ? ? "C1'" D DC 514 ? ? "C2'" D DC 514 ? ? 99.84 105.90 -6.06 0.80 N 57 1 N E ALA 47 ? ? CA E ALA 47 ? ? C E ALA 47 ? ? 131.58 111.00 20.58 2.70 N 58 1 CA E LEU 151 ? ? CB E LEU 151 ? ? CG E LEU 151 ? ? 136.10 115.30 20.80 2.30 N 59 1 CA F LEU 151 ? ? CB F LEU 151 ? ? CG F LEU 151 ? ? 132.85 115.30 17.55 2.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA E 47 ? ? -55.98 -5.73 2 1 ARG E 48 ? ? 53.35 -81.25 3 1 ASN E 49 ? ? -71.88 23.11 4 1 TYR E 52 ? ? -160.77 94.91 5 1 ALA E 58 ? ? -73.39 33.16 6 1 LYS E 109 ? ? -98.67 -156.87 7 1 LYS E 159 ? ? -69.21 84.61 8 1 CYS F 36 ? ? -170.32 137.12 9 1 ARG F 48 ? ? -49.65 -1.65 10 1 ARG F 56 ? ? -95.53 -64.87 11 1 ALA F 58 ? ? -90.09 41.11 12 1 LYS F 109 ? ? -106.94 -155.07 13 1 PHE F 110 ? ? -158.13 72.19 14 1 ASP F 112 ? ? 28.71 55.71 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 201 ? ? 0.067 'SIDE CHAIN' 2 1 DA A 204 ? ? 0.090 'SIDE CHAIN' 3 1 DG A 210 ? ? 0.050 'SIDE CHAIN' 4 1 DC A 213 ? ? 0.062 'SIDE CHAIN' 5 1 DG B 302 ? ? 0.065 'SIDE CHAIN' 6 1 DT B 307 ? ? 0.060 'SIDE CHAIN' 7 1 DT B 311 ? ? 0.092 'SIDE CHAIN' 8 1 DA B 312 ? ? 0.056 'SIDE CHAIN' 9 1 DG C 401 ? ? 0.073 'SIDE CHAIN' 10 1 DC C 402 ? ? 0.085 'SIDE CHAIN' 11 1 DT C 405 ? ? 0.075 'SIDE CHAIN' 12 1 DA C 407 ? ? 0.072 'SIDE CHAIN' 13 1 DA C 408 ? ? 0.068 'SIDE CHAIN' 14 1 DA C 414 ? ? 0.058 'SIDE CHAIN' 15 1 DC D 503 ? ? 0.060 'SIDE CHAIN' 16 1 DA D 510 ? ? 0.063 'SIDE CHAIN' 17 1 DT D 511 ? ? 0.097 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 ILE N N N N 301 ILE CA C N S 302 ILE C C N N 303 ILE O O N N 304 ILE CB C N S 305 ILE CG1 C N N 306 ILE CG2 C N N 307 ILE CD1 C N N 308 ILE OXT O N N 309 ILE H H N N 310 ILE H2 H N N 311 ILE HA H N N 312 ILE HB H N N 313 ILE HG12 H N N 314 ILE HG13 H N N 315 ILE HG21 H N N 316 ILE HG22 H N N 317 ILE HG23 H N N 318 ILE HD11 H N N 319 ILE HD12 H N N 320 ILE HD13 H N N 321 ILE HXT H N N 322 LEU N N N N 323 LEU CA C N S 324 LEU C C N N 325 LEU O O N N 326 LEU CB C N N 327 LEU CG C N N 328 LEU CD1 C N N 329 LEU CD2 C N N 330 LEU OXT O N N 331 LEU H H N N 332 LEU H2 H N N 333 LEU HA H N N 334 LEU HB2 H N N 335 LEU HB3 H N N 336 LEU HG H N N 337 LEU HD11 H N N 338 LEU HD12 H N N 339 LEU HD13 H N N 340 LEU HD21 H N N 341 LEU HD22 H N N 342 LEU HD23 H N N 343 LEU HXT H N N 344 LYS N N N N 345 LYS CA C N S 346 LYS C C N N 347 LYS O O N N 348 LYS CB C N N 349 LYS CG C N N 350 LYS CD C N N 351 LYS CE C N N 352 LYS NZ N N N 353 LYS OXT O N N 354 LYS H H N N 355 LYS H2 H N N 356 LYS HA H N N 357 LYS HB2 H N N 358 LYS HB3 H N N 359 LYS HG2 H N N 360 LYS HG3 H N N 361 LYS HD2 H N N 362 LYS HD3 H N N 363 LYS HE2 H N N 364 LYS HE3 H N N 365 LYS HZ1 H N N 366 LYS HZ2 H N N 367 LYS HZ3 H N N 368 LYS HXT H N N 369 MET N N N N 370 MET CA C N S 371 MET C C N N 372 MET O O N N 373 MET CB C N N 374 MET CG C N N 375 MET SD S N N 376 MET CE C N N 377 MET OXT O N N 378 MET H H N N 379 MET H2 H N N 380 MET HA H N N 381 MET HB2 H N N 382 MET HB3 H N N 383 MET HG2 H N N 384 MET HG3 H N N 385 MET HE1 H N N 386 MET HE2 H N N 387 MET HE3 H N N 388 MET HXT H N N 389 PHE N N N N 390 PHE CA C N S 391 PHE C C N N 392 PHE O O N N 393 PHE CB C N N 394 PHE CG C Y N 395 PHE CD1 C Y N 396 PHE CD2 C Y N 397 PHE CE1 C Y N 398 PHE CE2 C Y N 399 PHE CZ C Y N 400 PHE OXT O N N 401 PHE H H N N 402 PHE H2 H N N 403 PHE HA H N N 404 PHE HB2 H N N 405 PHE HB3 H N N 406 PHE HD1 H N N 407 PHE HD2 H N N 408 PHE HE1 H N N 409 PHE HE2 H N N 410 PHE HZ H N N 411 PHE HXT H N N 412 PRO N N N N 413 PRO CA C N S 414 PRO C C N N 415 PRO O O N N 416 PRO CB C N N 417 PRO CG C N N 418 PRO CD C N N 419 PRO OXT O N N 420 PRO H H N N 421 PRO HA H N N 422 PRO HB2 H N N 423 PRO HB3 H N N 424 PRO HG2 H N N 425 PRO HG3 H N N 426 PRO HD2 H N N 427 PRO HD3 H N N 428 PRO HXT H N N 429 SER N N N N 430 SER CA C N S 431 SER C C N N 432 SER O O N N 433 SER CB C N N 434 SER OG O N N 435 SER OXT O N N 436 SER H H N N 437 SER H2 H N N 438 SER HA H N N 439 SER HB2 H N N 440 SER HB3 H N N 441 SER HG H N N 442 SER HXT H N N 443 THR N N N N 444 THR CA C N S 445 THR C C N N 446 THR O O N N 447 THR CB C N R 448 THR OG1 O N N 449 THR CG2 C N N 450 THR OXT O N N 451 THR H H N N 452 THR H2 H N N 453 THR HA H N N 454 THR HB H N N 455 THR HG1 H N N 456 THR HG21 H N N 457 THR HG22 H N N 458 THR HG23 H N N 459 THR HXT H N N 460 TYR N N N N 461 TYR CA C N S 462 TYR C C N N 463 TYR O O N N 464 TYR CB C N N 465 TYR CG C Y N 466 TYR CD1 C Y N 467 TYR CD2 C Y N 468 TYR CE1 C Y N 469 TYR CE2 C Y N 470 TYR CZ C Y N 471 TYR OH O N N 472 TYR OXT O N N 473 TYR H H N N 474 TYR H2 H N N 475 TYR HA H N N 476 TYR HB2 H N N 477 TYR HB3 H N N 478 TYR HD1 H N N 479 TYR HD2 H N N 480 TYR HE1 H N N 481 TYR HE2 H N N 482 TYR HH H N N 483 TYR HXT H N N 484 VAL N N N N 485 VAL CA C N S 486 VAL C C N N 487 VAL O O N N 488 VAL CB C N N 489 VAL CG1 C N N 490 VAL CG2 C N N 491 VAL OXT O N N 492 VAL H H N N 493 VAL H2 H N N 494 VAL HA H N N 495 VAL HB H N N 496 VAL HG11 H N N 497 VAL HG12 H N N 498 VAL HG13 H N N 499 VAL HG21 H N N 500 VAL HG22 H N N 501 VAL HG23 H N N 502 VAL HXT H N N 503 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 ILE N CA sing N N 299 ILE N H sing N N 300 ILE N H2 sing N N 301 ILE CA C sing N N 302 ILE CA CB sing N N 303 ILE CA HA sing N N 304 ILE C O doub N N 305 ILE C OXT sing N N 306 ILE CB CG1 sing N N 307 ILE CB CG2 sing N N 308 ILE CB HB sing N N 309 ILE CG1 CD1 sing N N 310 ILE CG1 HG12 sing N N 311 ILE CG1 HG13 sing N N 312 ILE CG2 HG21 sing N N 313 ILE CG2 HG22 sing N N 314 ILE CG2 HG23 sing N N 315 ILE CD1 HD11 sing N N 316 ILE CD1 HD12 sing N N 317 ILE CD1 HD13 sing N N 318 ILE OXT HXT sing N N 319 LEU N CA sing N N 320 LEU N H sing N N 321 LEU N H2 sing N N 322 LEU CA C sing N N 323 LEU CA CB sing N N 324 LEU CA HA sing N N 325 LEU C O doub N N 326 LEU C OXT sing N N 327 LEU CB CG sing N N 328 LEU CB HB2 sing N N 329 LEU CB HB3 sing N N 330 LEU CG CD1 sing N N 331 LEU CG CD2 sing N N 332 LEU CG HG sing N N 333 LEU CD1 HD11 sing N N 334 LEU CD1 HD12 sing N N 335 LEU CD1 HD13 sing N N 336 LEU CD2 HD21 sing N N 337 LEU CD2 HD22 sing N N 338 LEU CD2 HD23 sing N N 339 LEU OXT HXT sing N N 340 LYS N CA sing N N 341 LYS N H sing N N 342 LYS N H2 sing N N 343 LYS CA C sing N N 344 LYS CA CB sing N N 345 LYS CA HA sing N N 346 LYS C O doub N N 347 LYS C OXT sing N N 348 LYS CB CG sing N N 349 LYS CB HB2 sing N N 350 LYS CB HB3 sing N N 351 LYS CG CD sing N N 352 LYS CG HG2 sing N N 353 LYS CG HG3 sing N N 354 LYS CD CE sing N N 355 LYS CD HD2 sing N N 356 LYS CD HD3 sing N N 357 LYS CE NZ sing N N 358 LYS CE HE2 sing N N 359 LYS CE HE3 sing N N 360 LYS NZ HZ1 sing N N 361 LYS NZ HZ2 sing N N 362 LYS NZ HZ3 sing N N 363 LYS OXT HXT sing N N 364 MET N CA sing N N 365 MET N H sing N N 366 MET N H2 sing N N 367 MET CA C sing N N 368 MET CA CB sing N N 369 MET CA HA sing N N 370 MET C O doub N N 371 MET C OXT sing N N 372 MET CB CG sing N N 373 MET CB HB2 sing N N 374 MET CB HB3 sing N N 375 MET CG SD sing N N 376 MET CG HG2 sing N N 377 MET CG HG3 sing N N 378 MET SD CE sing N N 379 MET CE HE1 sing N N 380 MET CE HE2 sing N N 381 MET CE HE3 sing N N 382 MET OXT HXT sing N N 383 PHE N CA sing N N 384 PHE N H sing N N 385 PHE N H2 sing N N 386 PHE CA C sing N N 387 PHE CA CB sing N N 388 PHE CA HA sing N N 389 PHE C O doub N N 390 PHE C OXT sing N N 391 PHE CB CG sing N N 392 PHE CB HB2 sing N N 393 PHE CB HB3 sing N N 394 PHE CG CD1 doub Y N 395 PHE CG CD2 sing Y N 396 PHE CD1 CE1 sing Y N 397 PHE CD1 HD1 sing N N 398 PHE CD2 CE2 doub Y N 399 PHE CD2 HD2 sing N N 400 PHE CE1 CZ doub Y N 401 PHE CE1 HE1 sing N N 402 PHE CE2 CZ sing Y N 403 PHE CE2 HE2 sing N N 404 PHE CZ HZ sing N N 405 PHE OXT HXT sing N N 406 PRO N CA sing N N 407 PRO N CD sing N N 408 PRO N H sing N N 409 PRO CA C sing N N 410 PRO CA CB sing N N 411 PRO CA HA sing N N 412 PRO C O doub N N 413 PRO C OXT sing N N 414 PRO CB CG sing N N 415 PRO CB HB2 sing N N 416 PRO CB HB3 sing N N 417 PRO CG CD sing N N 418 PRO CG HG2 sing N N 419 PRO CG HG3 sing N N 420 PRO CD HD2 sing N N 421 PRO CD HD3 sing N N 422 PRO OXT HXT sing N N 423 SER N CA sing N N 424 SER N H sing N N 425 SER N H2 sing N N 426 SER CA C sing N N 427 SER CA CB sing N N 428 SER CA HA sing N N 429 SER C O doub N N 430 SER C OXT sing N N 431 SER CB OG sing N N 432 SER CB HB2 sing N N 433 SER CB HB3 sing N N 434 SER OG HG sing N N 435 SER OXT HXT sing N N 436 THR N CA sing N N 437 THR N H sing N N 438 THR N H2 sing N N 439 THR CA C sing N N 440 THR CA CB sing N N 441 THR CA HA sing N N 442 THR C O doub N N 443 THR C OXT sing N N 444 THR CB OG1 sing N N 445 THR CB CG2 sing N N 446 THR CB HB sing N N 447 THR OG1 HG1 sing N N 448 THR CG2 HG21 sing N N 449 THR CG2 HG22 sing N N 450 THR CG2 HG23 sing N N 451 THR OXT HXT sing N N 452 TYR N CA sing N N 453 TYR N H sing N N 454 TYR N H2 sing N N 455 TYR CA C sing N N 456 TYR CA CB sing N N 457 TYR CA HA sing N N 458 TYR C O doub N N 459 TYR C OXT sing N N 460 TYR CB CG sing N N 461 TYR CB HB2 sing N N 462 TYR CB HB3 sing N N 463 TYR CG CD1 doub Y N 464 TYR CG CD2 sing Y N 465 TYR CD1 CE1 sing Y N 466 TYR CD1 HD1 sing N N 467 TYR CD2 CE2 doub Y N 468 TYR CD2 HD2 sing N N 469 TYR CE1 CZ doub Y N 470 TYR CE1 HE1 sing N N 471 TYR CE2 CZ sing Y N 472 TYR CE2 HE2 sing N N 473 TYR CZ OH sing N N 474 TYR OH HH sing N N 475 TYR OXT HXT sing N N 476 VAL N CA sing N N 477 VAL N H sing N N 478 VAL N H2 sing N N 479 VAL CA C sing N N 480 VAL CA CB sing N N 481 VAL CA HA sing N N 482 VAL C O doub N N 483 VAL C OXT sing N N 484 VAL CB CG1 sing N N 485 VAL CB CG2 sing N N 486 VAL CB HB sing N N 487 VAL CG1 HG11 sing N N 488 VAL CG1 HG12 sing N N 489 VAL CG1 HG13 sing N N 490 VAL CG2 HG21 sing N N 491 VAL CG2 HG22 sing N N 492 VAL CG2 HG23 sing N N 493 VAL OXT HXT sing N N 494 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1VTL 'double helix' 1VTL 'b-form double helix' 1VTL 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 14 1_555 1.175 -0.322 -0.149 -3.528 -8.332 -6.429 1 A_DG201:DC314_B A 201 ? B 314 ? 19 1 1 A DC 2 1_555 B DG 13 1_555 0.788 -0.697 0.854 -16.499 -7.741 -6.915 2 A_DC202:DG313_B A 202 ? B 313 ? 19 1 1 A DG 10 1_555 B DC 5 1_555 1.042 -0.370 0.108 0.233 2.153 0.395 3 A_DG210:DC305_B A 210 ? B 305 ? 19 1 1 A DG 11 1_555 B DC 4 1_555 0.294 -0.347 -0.071 -0.454 -5.060 -4.776 4 A_DG211:DC304_B A 211 ? B 304 ? 19 1 1 A DG 12 1_555 B DC 3 1_555 -0.600 -0.170 0.001 -0.470 -8.173 1.365 5 A_DG212:DC303_B A 212 ? B 303 ? 19 1 1 A DC 13 1_555 B DG 2 1_555 -0.718 -0.412 0.267 4.368 2.115 -1.267 6 A_DC213:DG302_B A 213 ? B 302 ? 19 1 1 C DG 1 1_555 D DC 14 1_555 0.260 -0.371 0.023 -15.051 -14.437 -1.132 7 C_DG401:DC514_D C 401 ? D 514 ? 19 1 1 C DC 2 1_555 D DG 13 1_555 -0.405 -0.367 0.473 -15.681 -13.991 -3.261 8 C_DC402:DG513_D C 402 ? D 513 ? 19 1 1 C DG 10 1_555 D DC 5 1_555 0.795 -0.211 0.177 2.283 1.528 4.199 9 C_DG410:DC505_D C 410 ? D 505 ? 19 1 1 C DG 11 1_555 D DC 4 1_555 -0.203 -0.326 0.149 7.836 -10.232 -0.751 10 C_DG411:DC504_D C 411 ? D 504 ? 19 1 1 C DG 12 1_555 D DC 3 1_555 0.285 -0.165 0.031 -4.048 -9.136 -2.328 11 C_DG412:DC503_D C 412 ? D 503 ? 19 1 1 C DC 13 1_555 D DG 2 1_555 -0.497 -0.259 0.047 -3.977 1.990 -5.896 12 C_DC413:DG502_D C 413 ? D 502 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 14 1_555 A DC 2 1_555 B DG 13 1_555 -0.099 -1.562 3.724 -7.170 2.842 29.568 -3.599 -1.410 3.489 5.453 13.757 30.536 1 AA_DG201DC202:DG313DC314_BB A 201 ? B 314 ? A 202 ? B 313 ? 1 A DG 10 1_555 B DC 5 1_555 A DG 11 1_555 B DC 4 1_555 -1.581 0.011 3.427 1.304 4.470 32.633 -0.771 3.018 3.335 7.905 -2.307 32.955 2 AA_DG210DG211:DC304DC305_BB A 210 ? B 305 ? A 211 ? B 304 ? 1 A DG 11 1_555 B DC 4 1_555 A DG 12 1_555 B DC 3 1_555 0.414 -0.094 3.290 -0.932 3.209 30.757 -0.799 -0.957 3.250 6.028 1.751 30.934 3 AA_DG211DG212:DC303DC304_BB A 211 ? B 304 ? A 212 ? B 303 ? 1 A DG 12 1_555 B DC 3 1_555 A DC 13 1_555 B DG 2 1_555 0.771 0.391 3.272 -0.916 -1.650 35.490 0.880 -1.397 3.231 -2.705 1.501 35.539 4 AA_DG212DC213:DG302DC303_BB A 212 ? B 303 ? A 213 ? B 302 ? 1 C DG 1 1_555 D DC 14 1_555 C DC 2 1_555 D DG 13 1_555 -0.786 -1.254 3.278 -3.861 -0.349 30.705 -2.282 0.712 3.363 -0.656 7.256 30.943 5 CC_DG401DC402:DG513DC514_DD C 401 ? D 514 ? C 402 ? D 513 ? 1 C DG 10 1_555 D DC 5 1_555 C DG 11 1_555 D DC 4 1_555 -1.178 -0.376 3.202 0.113 5.306 34.520 -1.405 1.981 3.108 8.876 -0.188 34.913 6 CC_DG410DG411:DC504DC505_DD C 410 ? D 505 ? C 411 ? D 504 ? 1 C DG 11 1_555 D DC 4 1_555 C DG 12 1_555 D DC 3 1_555 -0.111 -0.616 3.569 -0.549 9.221 36.972 -2.198 0.096 3.327 14.269 0.849 38.069 7 CC_DG411DG412:DC503DC504_DD C 411 ? D 504 ? C 412 ? D 503 ? 1 C DG 12 1_555 D DC 3 1_555 C DC 13 1_555 D DG 2 1_555 -0.301 -0.792 3.353 2.103 -2.147 21.140 -1.230 1.700 3.370 -5.815 -5.695 21.350 8 CC_DG412DC413:DG502DC503_DD C 412 ? D 503 ? C 413 ? D 502 ? # _atom_sites.entry_id 1VTL _atom_sites.fract_transf_matrix[1][1] 0.023923 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000251 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006826 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017362 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_