HEADER TRANSCRIPTION/DNA 17-DEC-93 1VTL TITLE CO-CRYSTAL STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF A TATA TITLE 2 ELEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'); COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*C)-3'); COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TATA BINDING PROTEIN (TBP); COMPND 11 CHAIN: E, F SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 7 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 8 ORGANISM_TAXID: 3702 KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.L.KIM,D.B.NIKOLOV,S.K.BURLEY REVDAT 3 27-DEC-23 1VTL 1 REMARK REVDAT 2 03-FEB-21 1VTL 1 AUTHOR JRNL REVDAT 1 13-JUL-11 1VTL 0 JRNL AUTH J.L.KIM,D.B.NIKOLOV,S.K.BURLEY JRNL TITL CO-CRYSTAL STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF JRNL TITL 2 A TATA ELEMENT JRNL REF NATURE V. 365 520 1993 JRNL REFN ISSN 0028-0836 JRNL PMID 8413605 JRNL DOI 10.1038/365520A0 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 27613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2921 REMARK 3 NUCLEIC ACID ATOMS : 1136 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VTL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000003044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 123.00; 123.00 REMARK 200 PH : 6.20 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; N REMARK 200 RADIATION SOURCE : ROTATING ANODE; ROTATING ANODE REMARK 200 BEAMLINE : NULL; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : NULL; NULL REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC; SIEMENS REMARK 200 -NICOLET REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18312 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.20, VAPOR DIFFUSION, TEMPERATURE REMARK 280 277.00K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 73.25000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP E 13 CG OD1 OD2 REMARK 470 LYS E 16 CG CD CE NZ REMARK 470 ARG E 48 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 16 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 DG A 211 H42 DC B 304 1.50 REMARK 500 OP1 DG C 410 HG SER F 76 1.52 REMARK 500 N1 DA A 204 H3 DT B 311 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT B 307 C5 DT B 307 C7 0.043 REMARK 500 CYS E 122 CB CYS E 122 SG -0.106 REMARK 500 CYS F 122 CB CYS F 122 SG -0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 201 O4' - C4' - C3' ANGL. DEV. = -3.2 DEGREES REMARK 500 DG A 201 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC A 202 C1' - O4' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 DC A 202 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC A 202 O4' - C1' - N1 ANGL. DEV. = 8.1 DEGREES REMARK 500 DT A 203 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DT A 203 N3 - C2 - O2 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT A 205 C6 - C5 - C7 ANGL. DEV. = -4.5 DEGREES REMARK 500 DC A 213 O4' - C1' - N1 ANGL. DEV. = 6.0 DEGREES REMARK 500 DT B 301 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG B 302 O4' - C4' - C3' ANGL. DEV. = -5.1 DEGREES REMARK 500 DG B 302 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC B 304 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC B 305 O5' - C5' - C4' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC B 305 O4' - C1' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DC B 305 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT B 307 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT B 307 C6 - C5 - C7 ANGL. DEV. = -5.4 DEGREES REMARK 500 DT B 308 C4 - C5 - C6 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT B 308 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 DT B 309 O4' - C4' - C3' ANGL. DEV. = -6.7 DEGREES REMARK 500 DT B 309 C4 - C5 - C6 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT B 309 C6 - C5 - C7 ANGL. DEV. = -6.5 DEGREES REMARK 500 DT B 311 C4 - C5 - C6 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT B 311 N3 - C2 - O2 ANGL. DEV. = -4.0 DEGREES REMARK 500 DT B 311 C6 - C5 - C7 ANGL. DEV. = -4.5 DEGREES REMARK 500 DA B 312 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DG B 313 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 DG B 313 C3' - O3' - P ANGL. DEV. = 8.0 DEGREES REMARK 500 DT C 403 C6 - C5 - C7 ANGL. DEV. = -4.2 DEGREES REMARK 500 DT C 405 C6 - C5 - C7 ANGL. DEV. = -4.0 DEGREES REMARK 500 DA C 407 O4' - C4' - C3' ANGL. DEV. = -4.0 DEGREES REMARK 500 DG C 410 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG C 410 N3 - C4 - N9 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG C 410 C8 - N9 - C1' ANGL. DEV. = 8.9 DEGREES REMARK 500 DG C 410 C4 - N9 - C1' ANGL. DEV. = -8.9 DEGREES REMARK 500 DG C 411 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG C 412 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC C 413 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DA C 414 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DT D 501 O4' - C1' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 DT D 501 C6 - C5 - C7 ANGL. DEV. = -5.2 DEGREES REMARK 500 DG D 502 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DG D 502 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DG D 502 O4' - C1' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DG D 502 O4' - C1' - N9 ANGL. DEV. = -5.1 DEGREES REMARK 500 DC D 504 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT D 506 C6 - C5 - C7 ANGL. DEV. = -5.4 DEGREES REMARK 500 DT D 507 C6 - C5 - C7 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT D 509 O4' - C4' - C3' ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 59 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA E 47 -5.73 -55.98 REMARK 500 ARG E 48 -81.25 53.35 REMARK 500 ASN E 49 23.11 -71.88 REMARK 500 TYR E 52 94.91 -160.77 REMARK 500 ALA E 58 33.16 -73.39 REMARK 500 LYS E 109 -156.87 -98.67 REMARK 500 LYS E 159 84.61 -69.21 REMARK 500 CYS F 36 137.12 -170.32 REMARK 500 ARG F 48 -1.65 -49.65 REMARK 500 ARG F 56 -64.87 -95.53 REMARK 500 ALA F 58 41.11 -90.09 REMARK 500 LYS F 109 -155.07 -106.94 REMARK 500 PHE F 110 72.19 -158.13 REMARK 500 ASP F 112 55.71 28.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG A 201 0.07 SIDE CHAIN REMARK 500 DA A 204 0.09 SIDE CHAIN REMARK 500 DG A 210 0.05 SIDE CHAIN REMARK 500 DC A 213 0.06 SIDE CHAIN REMARK 500 DG B 302 0.07 SIDE CHAIN REMARK 500 DT B 307 0.06 SIDE CHAIN REMARK 500 DT B 311 0.09 SIDE CHAIN REMARK 500 DA B 312 0.06 SIDE CHAIN REMARK 500 DG C 401 0.07 SIDE CHAIN REMARK 500 DC C 402 0.09 SIDE CHAIN REMARK 500 DT C 405 0.07 SIDE CHAIN REMARK 500 DA C 407 0.07 SIDE CHAIN REMARK 500 DA C 408 0.07 SIDE CHAIN REMARK 500 DA C 414 0.06 SIDE CHAIN REMARK 500 DC D 503 0.06 SIDE CHAIN REMARK 500 DA D 510 0.06 SIDE CHAIN REMARK 500 DT D 511 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1VTL E 13 198 UNP P28147 TF21_ARATH 13 198 DBREF 1VTL F 13 198 UNP P28147 TF21_ARATH 13 198 DBREF 1VTL A 201 214 PDB 1VTL 1VTL 201 214 DBREF 1VTL C 401 414 PDB 1VTL 1VTL 401 414 DBREF 1VTL B 301 314 PDB 1VTL 1VTL 301 314 DBREF 1VTL D 501 514 PDB 1VTL 1VTL 501 514 SEQRES 1 A 14 DG DC DT DA DT DA DA DA DA DG DG DG DC SEQRES 2 A 14 DA SEQRES 1 B 14 DT DG DC DC DC DT DT DT DT DA DT DA DG SEQRES 2 B 14 DC SEQRES 1 C 14 DG DC DT DA DT DA DA DA DA DG DG DG DC SEQRES 2 C 14 DA SEQRES 1 D 14 DT DG DC DC DC DT DT DT DT DA DT DA DG SEQRES 2 D 14 DC SEQRES 1 E 186 ASP LEU SER LYS HIS PRO SER GLY ILE VAL PRO THR LEU SEQRES 2 E 186 GLN ASN ILE VAL SER THR VAL ASN LEU ASP CYS LYS LEU SEQRES 3 E 186 ASP LEU LYS ALA ILE ALA LEU GLN ALA ARG ASN ALA GLU SEQRES 4 E 186 TYR ASN PRO LYS ARG PHE ALA ALA VAL ILE MET ARG ILE SEQRES 5 E 186 ARG GLU PRO LYS THR THR ALA LEU ILE PHE ALA SER GLY SEQRES 6 E 186 LYS MET VAL CYS THR GLY ALA LYS SER GLU ASP PHE SER SEQRES 7 E 186 LYS MET ALA ALA ARG LYS TYR ALA ARG ILE VAL GLN LYS SEQRES 8 E 186 LEU GLY PHE PRO ALA LYS PHE LYS ASP PHE LYS ILE GLN SEQRES 9 E 186 ASN ILE VAL GLY SER CYS ASP VAL LYS PHE PRO ILE ARG SEQRES 10 E 186 LEU GLU GLY LEU ALA TYR SER HIS ALA ALA PHE SER SER SEQRES 11 E 186 TYR GLU PRO GLU LEU PHE PRO GLY LEU ILE TYR ARG MET SEQRES 12 E 186 LYS VAL PRO LYS ILE VAL LEU LEU ILE PHE VAL SER GLY SEQRES 13 E 186 LYS ILE VAL ILE THR GLY ALA LYS MET ARG ASP GLU THR SEQRES 14 E 186 TYR LYS ALA PHE GLU ASN ILE TYR PRO VAL LEU SER GLU SEQRES 15 E 186 PHE ARG LYS ILE SEQRES 1 F 186 ASP LEU SER LYS HIS PRO SER GLY ILE VAL PRO THR LEU SEQRES 2 F 186 GLN ASN ILE VAL SER THR VAL ASN LEU ASP CYS LYS LEU SEQRES 3 F 186 ASP LEU LYS ALA ILE ALA LEU GLN ALA ARG ASN ALA GLU SEQRES 4 F 186 TYR ASN PRO LYS ARG PHE ALA ALA VAL ILE MET ARG ILE SEQRES 5 F 186 ARG GLU PRO LYS THR THR ALA LEU ILE PHE ALA SER GLY SEQRES 6 F 186 LYS MET VAL CYS THR GLY ALA LYS SER GLU ASP PHE SER SEQRES 7 F 186 LYS MET ALA ALA ARG LYS TYR ALA ARG ILE VAL GLN LYS SEQRES 8 F 186 LEU GLY PHE PRO ALA LYS PHE LYS ASP PHE LYS ILE GLN SEQRES 9 F 186 ASN ILE VAL GLY SER CYS ASP VAL LYS PHE PRO ILE ARG SEQRES 10 F 186 LEU GLU GLY LEU ALA TYR SER HIS ALA ALA PHE SER SER SEQRES 11 F 186 TYR GLU PRO GLU LEU PHE PRO GLY LEU ILE TYR ARG MET SEQRES 12 F 186 LYS VAL PRO LYS ILE VAL LEU LEU ILE PHE VAL SER GLY SEQRES 13 F 186 LYS ILE VAL ILE THR GLY ALA LYS MET ARG ASP GLU THR SEQRES 14 F 186 TYR LYS ALA PHE GLU ASN ILE TYR PRO VAL LEU SER GLU SEQRES 15 F 186 PHE ARG LYS ILE HELIX 1 1 ASP E 39 ALA E 47 1 9 HELIX 2 2 SER E 86 LYS E 103 1 18 HELIX 3 3 ARG E 129 HIS E 137 1 9 HELIX 4 4 MET E 177 PHE E 195 1 19 HELIX 5 5 ASP F 39 ALA F 47 1 9 HELIX 6 6 SER F 86 LEU F 104 1 19 HELIX 7 7 ARG F 129 HIS F 137 1 9 HELIX 8 8 MET F 177 SER F 193 1 17 SHEET 1 A10 ALA E 50 GLU E 51 0 SHEET 2 A10 VAL E 60 ILE E 64 -1 O ILE E 61 N GLU E 51 SHEET 3 A10 THR E 69 ILE E 73 -1 N THR E 69 O ILE E 64 SHEET 4 A10 LYS E 78 ALA E 84 -1 O VAL E 80 N LEU E 72 SHEET 5 A10 THR E 24 ASN E 33 -1 O ILE E 28 N ALA E 84 SHEET 6 A10 LYS E 111 ASP E 123 -1 N LYS E 111 O ASN E 33 SHEET 7 A10 LYS E 169 ALA E 175 -1 N ILE E 170 O CYS E 122 SHEET 8 A10 ILE E 160 ILE E 164 -1 O VAL E 161 N THR E 173 SHEET 9 A10 LEU E 151 MET E 155 -1 N LEU E 151 O ILE E 164 SHEET 10 A10 SER E 141 SER E 142 -1 O SER E 142 N ILE E 152 SHEET 1 B10 GLU F 51 TYR F 52 0 SHEET 2 B10 VAL F 60 ILE F 64 -1 N ILE F 61 O GLU F 51 SHEET 3 B10 THR F 69 ILE F 73 -1 N THR F 69 O ILE F 64 SHEET 4 B10 LYS F 78 ALA F 84 -1 O VAL F 80 N LEU F 72 SHEET 5 B10 THR F 24 ASN F 33 -1 N ILE F 28 O ALA F 84 SHEET 6 B10 LYS F 111 ASP F 123 -1 N LYS F 111 O ASN F 33 SHEET 7 B10 LYS F 169 ALA F 175 -1 N ILE F 170 O CYS F 122 SHEET 8 B10 VAL F 161 ILE F 164 -1 O VAL F 161 N THR F 173 SHEET 9 B10 LEU F 151 ARG F 154 -1 N LEU F 151 O ILE F 164 SHEET 10 B10 SER F 141 SER F 142 -1 O SER F 142 N ILE F 152 CISPEP 1 GLU E 66 PRO E 67 0 -0.89 CISPEP 2 VAL E 157 PRO E 158 0 -0.46 CISPEP 3 GLU F 66 PRO F 67 0 -0.86 CISPEP 4 VAL F 157 PRO F 158 0 -0.40 CRYST1 41.800 146.500 57.600 90.00 90.60 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023923 0.000000 0.000251 0.00000 SCALE2 0.000000 0.006826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017362 0.00000